Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF516 Gene 0 12.46 14.94 54.19 31.28 27.30 55.74 44.18 5.10 22.32 3.74 56.20 40.05 30.50 28.49 35.19 60.34 22.68 48.16 79.56 58.87 86.47 98.18 83.74 2 217537 Transcript 0 1.11 0.00 0.32 0.14 1.35 1.29 3.16 0.00 2.10 0.00 5.14 2.87 1.63 1.73 0.81 0.56 4.57 2.15 5.07 1.90 5.17 2.02 9.04 3 443185 Transcript 0 16.34 16.31 56.76 27.38 24.19 35.87 31.73 3.37 16.21 4.75 30.82 21.58 13.88 18.53 33.88 33.17 11.13 26.20 64.99 33.83 55.67 54.38 41.56 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.04 0.00 0.20 4.35 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 2.44 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 3.67 6 E1a_E3a NovelJunction 0 0.00 0.00 4.49 0.00 0.00 7.72 0.00 2.22 0.00 0.00 2.68 5.70 0.00 0.00 0.00 4.19 3.93 16.66 8.47 0.00 10.69 2.33 0.00 7 I1_AR1 ActiveIntronRegion 0 3.60 2.59 38.77 8.86 11.96 17.67 13.01 0.46 5.39 0.46 5.20 16.83 2.40 0.59 5.72 6.91 5.92 0.70 9.68 9.58 1.58 2.61 6.22 8 I1_AR2 ActiveIntronRegion 0 2.41 1.15 25.95 5.46 3.16 10.20 5.64 0.67 2.98 0.08 10.82 7.16 4.50 4.57 7.90 12.53 4.51 8.37 10.53 8.85 8.12 3.34 8.03 9 I1_AR3 ActiveIntronRegion 0 1.18 0.91 14.85 3.42 0.80 1.77 5.37 1.35 4.31 0.51 4.00 6.45 4.59 2.93 7.51 7.47 3.20 1.72 6.90 7.86 6.74 3.11 9.97 10 I1_SR3 SilentIntronRegion 0 1.27 1.24 12.14 2.95 2.30 1.43 10.42 0.83 4.20 0.62 1.35 13.30 7.69 0.23 2.83 4.16 2.27 0.82 4.29 7.94 2.35 0.91 6.60 11 I1_AR4 ActiveIntronRegion 0 0.14 0.66 13.32 4.26 0.00 0.00 9.40 0.00 10.28 0.00 0.19 1.26 0.00 0.00 5.15 0.86 0.00 0.30 9.04 10.64 0.43 1.61 10.52 12 I1_AR5 ActiveIntronRegion 0 2.31 2.21 7.52 1.68 1.18 1.75 12.63 0.11 4.03 0.16 0.87 4.08 15.85 0.00 2.45 2.57 0.00 0.52 3.86 5.31 1.39 1.81 4.61 13 I1_AR6 ActiveIntronRegion 0 0.00 3.23 16.35 2.96 0.00 1.39 6.39 0.00 3.36 2.29 0.00 7.61 5.01 0.00 6.70 5.43 0.23 0.64 6.26 15.26 2.58 0.79 12.46 14 I1_SR5 SilentIntronRegion 0 3.10 1.38 9.26 2.84 1.13 0.89 10.28 1.88 4.31 0.17 1.01 16.29 8.06 0.55 1.53 4.17 2.95 0.21 4.39 8.09 0.88 1.39 6.13 15 I1_AR8 ActiveIntronRegion 0 2.12 2.03 2.45 0.00 5.35 0.00 9.27 0.00 1.76 0.00 1.93 22.88 18.09 0.93 2.07 2.97 0.00 0.00 1.37 17.02 3.15 2.08 2.94 16 I1_AR9 ActiveIntronRegion 0 2.79 1.27 10.43 1.94 5.10 0.47 11.30 0.73 3.92 0.44 3.32 16.65 14.19 1.23 2.89 10.49 1.28 0.75 5.76 14.38 4.94 0.95 10.77 17 I1_SR6 SilentIntronRegion 0 3.79 1.70 10.90 4.16 1.11 1.00 11.55 2.08 2.88 0.47 3.37 20.17 28.90 0.40 1.62 7.66 3.62 0.34 5.79 13.91 2.72 3.45 11.27 18 I1_AR10 ActiveIntronRegion 1 3.10 3.18 8.09 3.24 1.13 0.97 10.51 3.53 4.61 0.53 0.96 20.11 22.41 0.88 2.41 10.73 3.16 0.79 6.82 8.77 1.64 0.44 6.97 19 I1_AR12 ActiveIntronRegion 1 3.55 2.81 14.31 4.89 13.38 0.00 14.25 4.07 6.39 0.00 0.74 1.78 4.41 0.10 11.86 29.81 0.68 12.39 11.80 19.90 7.45 4.66 20.04 20 I1_AR13 ActiveIntronRegion 0 1.03 0.74 9.99 2.27 3.89 0.00 6.70 3.67 2.51 0.00 1.93 5.77 6.68 1.62 5.89 12.61 6.40 8.73 11.29 12.89 3.74 1.96 11.92 21 I1_AR14 ActiveIntronRegion 0 0.00 0.00 10.85 1.36 2.68 0.00 3.97 1.73 2.29 0.00 2.21 17.32 1.34 0.93 0.00 8.92 13.20 3.96 10.47 14.89 0.00 0.00 8.81 22 I1_AR15 ActiveIntronRegion 0 0.00 0.00 11.03 1.75 2.68 0.00 3.97 2.22 2.47 0.00 1.93 17.94 0.00 0.00 4.97 8.92 16.50 6.07 9.56 14.89 0.00 0.00 6.71 23 I1_AR17 ActiveIntronRegion 0 3.00 0.73 5.29 7.32 2.39 1.66 7.18 0.46 1.37 0.00 0.05 13.29 15.86 0.15 1.36 3.28 0.00 0.00 5.94 1.40 0.79 3.35 3.67 24 E2_Aa NovelBoundary 0 0.00 0.00 0.00 6.03 7.64 4.94 29.59 2.18 3.07 0.00 2.42 18.31 0.00 0.00 4.45 3.93 8.13 2.28 4.52 2.56 6.18 2.82 10.50 25 ER2a ExonRegion 0 0.00 0.00 1.32 0.83 1.11 5.01 12.30 0.00 2.50 0.00 5.09 3.38 4.92 0.63 0.50 3.33 4.83 4.42 9.63 2.02 9.03 0.00 10.46 26 E2_Ab KnownBoundary 0 0.00 0.00 5.09 1.83 3.99 11.58 22.61 0.00 5.27 0.00 7.16 12.00 6.49 4.47 0.00 8.37 8.70 4.68 18.17 6.07 19.71 0.00 23.22 27 ER2b ExonRegion 0 1.01 0.00 1.83 0.95 2.24 2.31 7.07 0.00 4.09 0.00 8.31 15.48 4.18 1.80 2.86 4.36 9.77 1.67 9.95 5.86 11.32 4.08 20.11 28 E2a_E3a KnownJunction 0 3.48 0.00 0.00 0.00 4.33 0.00 0.00 0.00 4.54 0.00 12.16 7.35 0.00 2.12 0.00 0.00 12.72 2.57 14.40 3.00 11.00 5.88 20.06 29 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER3a ExonRegion 0 3.17 0.00 0.61 0.00 2.68 0.00 6.62 0.00 5.56 0.00 13.53 6.49 4.69 3.25 4.35 0.00 9.90 1.85 6.37 6.38 11.02 6.25 17.62 31 ER3b ExonRegion 0 2.32 2.11 20.78 6.02 4.22 18.09 10.52 2.74 10.07 1.60 46.67 12.07 12.77 25.24 32.43 44.17 20.92 41.20 60.13 49.02 74.91 46.87 63.60 32 E3a_E4a KnownJunction 1 0.00 12.37 12.74 5.36 7.47 44.92 23.36 0.00 9.43 0.00 39.54 33.91 13.47 9.42 55.75 48.79 22.44 48.87 95.06 44.10 60.17 82.42 75.03 33 Ix_SR8 SilentIntronRegion 0 3.80 2.10 10.90 7.26 4.23 3.97 20.34 1.99 2.11 0.57 4.18 18.24 7.44 1.21 3.34 4.79 2.08 1.05 5.81 6.07 2.68 2.75 5.74 34 Ix_AR11 ActiveIntronRegion 0 3.59 1.53 8.57 5.36 6.64 2.73 19.70 0.59 1.13 1.01 7.41 12.57 6.56 1.88 5.63 5.03 1.14 5.53 8.86 6.68 2.30 3.35 10.68 35 E4_Aa NovelBoundary 1 3.48 0.00 1.39 3.33 3.57 10.79 9.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.51 0.00 0.00 2.32 13.27 2.75 0.00 0.00 0.00 36 ER4a ExonRegion 0 4.71 4.76 35.77 18.06 9.04 31.59 23.10 4.18 22.19 4.74 60.91 25.37 24.64 37.31 41.95 78.24 24.61 61.15 87.71 59.43 121.26 88.24 102.08 37 E4_Da NovelBoundary 0 5.93 0.00 9.20 5.49 6.88 5.91 5.17 0.00 1.79 1.32 21.37 6.00 6.49 7.06 0.00 14.70 3.65 7.34 23.06 9.46 18.16 35.45 18.87 38 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E4b_E5a KnownJunction 0 6.08 2.83 34.06 12.45 14.94 20.61 20.89 1.68 18.81 6.12 35.90 18.46 12.82 21.66 46.36 37.00 8.79 28.89 72.47 37.58 71.72 32.58 34.74 40 ER4b ExonRegion 0 4.23 4.07 27.37 10.45 8.03 14.67 15.00 1.73 13.17 5.73 28.99 20.20 10.94 26.53 42.55 42.60 9.90 17.25 69.02 27.66 66.11 40.98 33.28 41 ER5a ExonRegion 0 3.39 5.10 41.01 13.82 9.03 40.90 29.99 3.02 19.17 4.43 61.94 21.53 21.38 44.26 45.04 81.42 34.68 65.31 98.21 54.50 122.92 75.80 75.06 42 E5_Da NovelBoundary 0 0.00 0.00 20.43 3.80 4.33 5.79 10.20 1.73 5.03 2.93 16.58 0.00 6.01 4.59 4.45 14.95 0.00 45.89 21.46 12.72 28.79 10.65 11.52 43 E5a_E6a KnownJunction 0 3.56 6.71 46.18 18.68 14.77 42.87 30.12 2.30 17.94 4.11 56.59 28.66 13.64 19.13 44.01 59.98 24.31 81.87 120.38 56.44 114.97 51.31 82.12 44 Ix Intron 0 4.26 2.93 11.56 5.33 4.74 6.23 14.47 1.55 5.22 0.43 14.54 20.92 16.81 6.21 10.49 20.70 6.45 13.72 18.13 19.85 16.20 16.10 17.80 45 Ix_SR1 SilentIntronRegion 0 4.27 2.94 11.57 5.33 4.75 6.23 14.48 1.55 5.22 0.43 14.55 20.94 16.82 6.21 10.49 20.71 6.45 13.73 18.14 19.86 16.21 16.11 17.81 46 E6_Aa NovelBoundary 1 0.00 0.00 13.72 5.06 0.00 5.17 7.82 0.00 1.16 0.00 4.37 12.75 26.30 2.47 5.19 14.95 8.23 23.50 8.38 15.15 8.22 9.74 11.18 47 ER6a ExonRegion 1 4.27 4.11 37.64 23.43 11.82 31.05 25.48 3.85 19.47 3.67 65.15 39.25 11.35 40.14 47.55 80.64 32.07 81.88 100.87 47.46 121.56 72.57 93.58 48 E6a_E7a KnownJunction 0 3.41 0.00 41.84 23.47 14.26 24.87 28.93 6.98 22.37 4.57 59.65 33.46 8.28 57.33 37.70 69.13 29.55 60.07 96.38 51.90 109.41 132.94 87.16 49 E6a_E8a NovelJunction 0 3.19 12.56 13.72 7.66 8.23 19.14 21.46 0.00 7.73 0.00 19.95 0.00 0.00 4.89 14.34 17.00 8.79 14.14 42.45 39.12 28.42 6.06 0.00 50 Ix Intron 0 2.35 1.55 3.53 3.33 2.82 5.69 9.46 1.06 5.60 0.90 11.88 10.14 15.93 5.54 5.07 20.01 4.83 16.67 17.16 16.94 25.03 13.42 22.01 51 Ix_SR2 SilentIntronRegion 0 2.47 1.52 2.69 2.51 1.63 5.44 7.15 0.83 2.10 0.35 5.95 2.86 9.79 3.78 5.18 8.87 6.19 12.27 15.18 10.42 23.05 10.41 12.17 52 Ix_AR1 ActiveIntronRegion 0 2.58 1.74 3.98 4.00 3.67 6.47 11.44 1.28 7.23 1.22 14.71 14.62 19.62 6.24 5.32 26.00 4.58 19.74 18.75 20.55 26.33 15.20 27.24 53 Ix_SR1 SilentIntronRegion 0 0.00 0.00 3.00 0.74 0.13 0.00 1.45 0.00 5.45 0.33 10.95 0.00 8.34 6.55 2.53 12.31 1.73 7.71 11.58 11.65 22.32 10.15 15.80 54 E7_Aa NovelBoundary 1 2.82 6.71 8.22 5.29 0.00 6.98 10.38 1.97 8.48 0.00 14.69 11.70 0.00 11.71 4.45 45.54 3.83 24.50 20.24 42.82 36.14 19.47 14.08 55 ER7a ExonRegion 0 10.02 0.06 41.03 16.74 14.72 46.36 33.84 7.55 16.02 2.36 95.11 39.03 37.87 41.25 32.17 108.83 37.67 52.96 125.49 70.12 100.75 107.64 125.63 56 E7_Da NovelBoundary 0 0.00 0.00 1.09 0.00 7.81 0.00 13.65 0.00 4.63 0.00 18.00 23.71 13.31 4.94 0.00 25.89 7.39 21.68 31.34 19.56 15.32 11.33 18.44 57 E7a_E8a KnownJunction 0 0.00 0.00 23.65 9.62 3.65 49.63 28.22 10.47 11.05 1.67 63.23 36.61 32.63 26.66 22.75 64.09 19.82 35.44 110.12 49.54 92.85 53.82 116.69 58 Ix Intron 0 2.69 5.12 8.59 5.86 7.90 10.89 15.96 1.83 8.80 1.17 20.56 27.77 27.38 6.29 5.95 19.26 7.70 15.85 15.32 24.80 22.09 31.14 21.84 59 Ix_SR2 SilentIntronRegion 0 1.41 2.88 4.71 3.23 4.56 5.67 11.04 1.24 5.74 0.91 14.09 22.68 21.08 5.62 3.82 13.47 5.70 11.43 10.69 21.21 17.37 20.12 16.07 60 Ix_AR3 ActiveIntronRegion 0 0.00 2.49 5.65 5.53 7.28 10.80 10.52 1.63 13.65 1.15 24.27 38.97 41.69 2.62 1.29 17.01 3.30 10.78 11.86 19.86 19.10 21.18 28.55 61 Ix_AR2 ActiveIntronRegion 0 1.68 5.34 6.66 3.87 8.06 10.97 15.99 0.22 7.96 1.02 19.88 34.53 17.22 4.79 5.70 20.67 8.31 16.39 16.59 21.60 27.08 20.74 24.39 62 Ix_SR1 SilentIntronRegion 0 4.26 7.42 12.59 9.09 11.20 16.06 21.35 2.60 12.12 1.53 27.11 32.74 35.74 7.26 8.14 24.62 9.76 20.50 19.56 28.98 26.13 44.94 27.24 63 Ix_AR1 ActiveIntronRegion 0 2.44 7.62 19.07 4.31 13.65 19.82 15.89 4.24 9.88 0.00 30.99 17.68 25.02 6.70 10.05 33.29 9.11 18.57 27.85 29.91 29.16 27.85 30.05 64 E8_Aa NovelBoundary 0 3.78 22.17 13.39 6.49 28.27 14.93 10.25 4.68 8.45 1.45 30.48 6.30 6.82 11.83 16.44 23.33 0.00 21.18 4.80 40.27 31.01 24.37 18.87 65 ER8a ExonRegion 0 16.10 22.81 69.41 49.89 49.25 94.07 77.41 6.82 32.09 4.37 62.88 74.05 51.99 26.87 31.95 66.41 21.80 44.46 82.86 68.53 78.33 145.07 90.85 66 E8_Da KnownBoundary 0 38.23 84.39 199.37 121.83 83.96 129.30 146.40 9.04 54.14 14.34 64.96 81.93 33.93 29.78 22.25 75.11 32.45 53.06 85.65 84.37 93.47 165.02 79.64 67 ER8b ExonRegion 0 55.06 58.35 165.63 86.61 73.79 108.19 91.04 10.07 32.85 7.15 58.37 47.65 31.76 25.94 46.62 53.10 25.81 58.66 118.45 70.06 84.84 143.96 98.23 68 IG34_AR52 ActiveIntergenicRegion 0 57.94 48.83 196.46 68.48 76.13 91.54 80.79 10.12 26.00 7.24 43.14 45.56 34.42 18.32 42.34 53.66 15.43 39.04 98.95 48.68 69.59 121.35 97.89