Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PHLPP1 Gene 0 15.48 24.08 69.28 31.30 27.05 30.14 25.33 30.18 30.32 32.66 38.26 30.21 12.44 44.64 26.09 37.97 7.57 23.65 7.89 19.76 21.30 24.00 17.97 2 415319 Transcript 0 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 262719 Transcript 0 0.00 0.46 5.07 1.04 0.12 2.48 0.77 2.16 2.76 4.30 8.62 2.23 1.41 10.48 2.34 7.38 3.01 4.97 1.16 5.38 7.67 2.25 2.25 4 497351 Transcript 0 0.00 0.31 0.56 0.30 2.41 0.00 0.99 0.39 0.28 0.26 0.01 1.07 1.16 0.00 0.00 2.67 0.00 0.41 0.00 1.28 0.00 0.00 0.44 5 400316 Transcript 0 0.11 0.17 1.38 0.94 0.13 0.34 0.62 0.23 0.68 0.48 0.90 0.36 0.47 0.78 0.10 0.99 0.22 0.34 0.00 0.39 0.33 0.52 0.29 6 487409 Transcript 0 0.29 0.44 0.87 0.84 0.19 0.24 1.53 0.19 0.75 0.25 0.00 0.26 0.56 0.10 0.35 0.00 0.00 0.12 0.00 0.29 0.00 0.00 0.19 7 ER1a ExonRegion 0 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1_Da NovelBoundary 0 0.00 3.29 12.83 2.06 0.00 2.73 0.00 0.00 8.33 5.51 7.21 6.30 6.01 9.59 8.90 16.06 0.00 19.86 4.52 9.08 6.05 2.57 6.83 9 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 4.18 7.43 0.00 0.00 4.71 2.86 5.19 2.31 1.92 3.34 1.49 8.47 0.73 2.05 11 I1_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 4.24 7.53 0.00 0.00 4.77 2.90 5.26 2.34 1.95 3.38 1.51 8.59 0.74 2.08 12 E2_Aa NovelBoundary 0 0.00 0.00 11.03 0.00 0.00 0.00 0.00 1.68 6.39 0.00 6.95 0.00 0.00 0.00 0.00 35.55 4.49 19.32 3.95 2.36 0.00 8.63 3.41 13 ER2a ExonRegion 0 0.00 0.46 5.07 1.04 0.12 2.48 0.77 2.16 2.76 4.30 8.62 2.23 1.41 10.48 2.34 7.38 3.01 4.97 1.16 5.38 7.67 2.25 2.25 14 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 2.30 0.00 8.46 0.00 3.81 0.00 2.62 4.88 5.27 0.00 15 ER2b ExonRegion 1 2.29 8.91 20.14 6.62 8.31 18.81 11.61 12.79 11.84 17.39 21.90 10.13 7.89 21.06 4.13 23.79 8.01 12.51 2.71 11.56 10.59 11.92 12.61 16 E2a_E5b KnownJunction 0 10.37 5.99 35.07 11.62 7.98 16.87 12.32 15.44 23.96 31.35 61.44 32.41 19.80 46.27 11.50 48.19 12.72 16.46 0.00 14.32 16.62 17.64 19.89 17 I2_AR1 ActiveIntronRegion 0 4.01 3.08 15.08 4.01 4.48 1.01 5.47 4.33 1.83 0.90 0.00 1.31 0.00 0.67 2.16 2.23 0.35 0.79 0.96 0.68 0.47 0.02 1.77 18 I2_SR4 SilentIntronRegion 0 13.94 17.37 5.35 6.94 3.92 1.34 8.73 5.03 2.25 3.34 0.00 1.93 1.88 0.00 2.79 1.45 0.81 1.12 0.78 1.56 0.00 0.00 0.72 19 ER3a ExonRegion 0 0.00 0.61 1.11 0.61 4.82 0.00 1.99 0.77 0.56 0.51 0.01 2.14 2.32 0.00 0.00 5.35 0.00 0.83 0.00 2.55 0.00 0.00 0.88 20 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I3_AR16 ActiveIntronRegion 1 1.79 0.69 4.32 5.16 2.42 0.00 4.61 1.51 1.37 0.68 0.35 16.81 0.85 0.48 3.28 1.33 0.00 0.00 0.58 1.15 0.40 0.00 0.45 22 ER4a ExonRegion 0 0.00 0.00 0.15 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER5a ExonRegion 0 0.21 0.34 2.61 1.54 0.27 0.67 1.24 0.46 1.36 0.96 1.80 0.72 0.94 1.57 0.19 1.98 0.44 0.68 0.00 0.78 0.66 1.04 0.59 24 ER5b ExonRegion 1 4.50 11.28 43.74 24.49 15.66 36.65 22.28 29.30 40.10 38.31 64.97 26.97 17.59 56.30 10.97 58.62 12.68 32.71 9.30 32.39 28.42 34.07 32.47 25 E5a_E7a KnownJunction 1 0.00 15.00 72.71 43.28 32.43 75.64 60.11 52.29 58.65 59.12 82.13 24.16 73.05 101.30 15.82 88.87 21.79 51.11 18.35 62.38 40.34 78.13 63.51 26 ER6a ExonRegion 0 0.70 0.00 1.77 2.02 0.00 1.21 3.01 0.00 1.79 0.00 0.00 0.00 0.00 0.02 0.70 0.00 0.00 0.58 0.00 0.70 0.00 0.00 0.97 27 E6_Da NovelBoundary 0 0.00 0.00 22.29 3.76 0.00 0.00 6.18 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER7a ExonRegion 1 4.82 20.03 48.81 23.34 21.64 46.54 27.86 35.39 41.51 44.05 68.34 50.06 22.67 67.98 12.76 51.21 20.12 43.10 19.06 36.41 37.95 36.53 37.38 30 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E7a_E9a KnownJunction 1 7.19 17.83 44.76 16.15 10.95 39.18 35.64 15.40 32.00 21.54 68.86 25.81 6.49 77.40 14.09 58.10 21.60 46.76 0.00 9.14 43.18 44.88 22.62 32 ER8a ExonRegion 0 0.77 2.21 2.60 2.16 0.97 0.00 4.65 0.94 1.95 1.24 0.00 1.30 2.81 0.49 1.06 0.02 0.00 0.00 0.00 0.76 0.00 0.00 0.00 33 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER9a ExonRegion 0 10.02 14.72 54.63 24.53 19.27 53.69 35.45 28.07 41.42 42.12 52.90 36.61 19.12 57.17 18.58 61.55 11.62 39.39 11.49 29.60 31.35 45.71 24.31 35 E9_Da KnownBoundary 0 10.08 21.71 46.78 25.84 22.58 44.52 41.38 31.79 46.70 50.58 45.17 49.67 26.78 52.86 30.78 36.49 9.54 36.77 4.61 51.20 19.83 42.62 11.69 36 ER9b ExonRegion 1 8.39 13.22 38.40 16.23 19.55 34.78 34.24 20.21 30.27 34.29 51.46 50.58 32.40 67.18 17.34 41.61 12.72 41.51 10.64 33.37 28.82 33.00 41.05 37 E9b_E10a KnownJunction 0 14.45 20.92 38.61 23.07 17.23 38.73 40.67 14.09 24.62 33.31 48.85 67.07 25.00 62.63 14.22 51.70 4.77 48.79 8.75 19.62 21.81 18.25 48.91 38 I9_AR1 ActiveIntronRegion 0 2.12 4.07 14.93 14.50 6.57 1.67 7.46 11.00 6.18 3.13 1.23 0.00 2.56 0.00 0.00 0.00 0.00 1.85 1.16 0.00 0.00 0.00 2.94 39 I9_AR2 ActiveIntronRegion 0 5.81 5.42 24.26 14.58 9.19 3.62 9.20 11.87 5.76 5.36 1.75 2.53 4.26 0.20 2.66 7.53 1.46 7.64 1.76 6.08 1.28 0.69 1.40 40 ER10a ExonRegion 0 12.51 24.95 46.67 23.87 24.60 55.72 38.00 17.57 31.86 38.94 38.58 52.68 23.03 61.01 21.98 51.14 6.69 41.53 9.23 27.17 17.66 25.59 29.22 41 E10_Da KnownBoundary 0 17.11 31.24 47.90 32.53 47.54 57.69 30.38 23.00 40.07 32.85 30.17 43.51 27.76 59.63 42.65 25.04 4.77 39.38 3.67 27.93 25.51 36.80 16.48 42 ER10b ExonRegion 0 19.11 14.97 37.88 20.32 29.59 48.72 33.67 22.42 31.77 36.32 35.35 45.05 15.50 60.02 25.44 42.34 5.65 25.41 3.05 37.68 25.26 35.87 14.34 43 E10b_E11a KnownJunction 0 10.00 9.01 53.10 16.65 39.81 28.17 34.67 22.47 33.04 44.32 54.80 70.82 27.43 70.99 18.42 56.99 7.39 25.08 13.84 22.24 20.32 49.17 16.82 44 ER11a ExonRegion 0 10.08 24.04 43.94 38.00 42.64 41.99 40.94 33.15 43.26 41.30 58.82 80.10 15.98 61.79 24.08 53.54 10.82 29.50 11.61 30.85 20.96 36.84 23.05 45 E11a_E12a KnownJunction 0 6.37 22.76 54.34 46.48 26.66 58.21 42.35 29.53 43.43 28.02 70.81 83.28 6.49 55.98 27.44 67.50 3.74 23.96 21.55 36.94 8.59 56.03 29.54 46 ER12a ExonRegion 0 12.19 29.75 60.01 38.67 48.11 45.42 49.68 41.31 47.17 36.76 82.99 87.76 36.87 52.30 24.77 47.85 16.91 23.76 10.48 38.87 19.40 50.46 19.93 47 E12a_E13a KnownJunction 0 6.08 54.66 47.04 33.23 29.20 51.90 26.54 43.13 36.98 30.94 76.02 112.84 39.28 60.51 20.40 61.27 4.02 20.23 3.67 37.20 8.59 39.56 28.94 48 ER13a ExonRegion 1 10.72 44.64 71.63 32.35 25.57 55.25 28.19 44.91 41.12 41.53 74.75 110.51 29.83 50.51 16.79 63.10 7.47 32.17 4.33 41.05 15.68 42.93 28.89 49 E13a_E14a KnownJunction 0 25.34 34.34 100.79 41.72 25.64 71.21 67.57 55.53 49.28 47.09 55.65 87.78 13.15 55.57 19.04 75.54 8.23 35.44 9.51 50.37 17.98 23.09 41.91 50 E14_Aa NovelBoundary 0 3.78 6.18 11.83 2.83 12.14 0.00 16.08 3.24 3.01 0.00 0.00 6.00 0.00 2.12 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 51 ER14a ExonRegion 0 18.78 39.23 84.24 37.27 44.51 65.27 52.88 47.06 53.01 40.23 73.13 103.68 32.44 80.56 35.15 80.37 10.73 39.19 14.90 38.14 36.61 57.67 31.87 52 E14a_E15a KnownJunction 1 21.63 55.06 67.53 37.29 76.57 35.38 45.49 44.40 52.78 34.76 53.96 91.68 13.64 100.89 27.44 95.02 9.54 35.28 13.08 36.56 34.72 52.78 33.12 53 E15_Aa NovelBoundary 0 0.00 3.16 6.89 5.79 11.63 0.00 19.87 2.51 4.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER15a ExonRegion 0 15.36 30.48 73.42 37.45 34.99 37.46 45.13 35.90 43.30 32.12 57.58 73.13 27.24 75.05 24.01 78.36 9.39 40.11 9.70 32.12 41.19 41.98 30.35 55 E15a_E16a KnownJunction 1 14.08 38.68 74.78 26.27 19.10 29.13 27.12 28.09 37.12 32.96 46.91 42.46 20.29 96.71 17.80 62.80 4.11 36.15 8.28 37.90 38.55 27.25 37.65 56 ER16a ExonRegion 0 11.45 43.15 68.13 38.62 32.79 51.35 45.26 33.62 38.57 43.20 60.09 44.29 19.34 79.13 28.95 67.43 4.80 33.35 10.63 29.92 38.36 30.42 26.55 57 E16a_E17a KnownJunction 1 19.63 25.39 70.49 33.63 30.73 46.00 44.25 35.12 33.65 45.77 38.54 71.42 6.82 64.63 30.16 46.40 4.77 43.57 12.24 20.84 29.65 10.96 7.68 58 ER17a ExonRegion 0 15.11 24.43 81.90 39.55 24.56 34.44 35.40 43.52 51.18 46.57 52.92 57.05 22.18 84.91 23.57 66.94 16.87 37.69 10.94 33.18 31.57 26.61 29.69 59 E17a_E18a KnownJunction 0 17.86 30.98 92.49 32.06 39.05 34.98 56.13 33.76 52.95 53.32 49.70 66.92 13.64 57.39 31.03 53.40 9.54 28.19 8.09 23.20 32.99 23.39 19.63 60 ER18a ExonRegion 1 9.82 44.37 90.45 39.27 42.55 51.00 43.07 49.70 51.07 53.34 58.55 55.42 19.76 81.29 19.80 68.70 15.92 37.46 12.69 31.59 26.95 27.80 24.88 61 E18a_E19a KnownJunction 1 25.34 25.46 81.61 38.96 56.71 48.32 39.97 45.59 57.93 48.86 62.07 24.01 34.41 78.46 14.71 51.70 3.83 26.03 0.00 26.78 38.98 14.21 19.38 62 ER19a ExonRegion 1 19.33 25.55 82.16 31.54 36.72 36.06 35.37 35.18 38.03 43.17 48.19 33.28 13.00 72.40 18.10 49.05 9.68 36.16 7.74 27.17 28.08 29.05 23.49 63 E19a_E20a KnownJunction 0 9.56 40.85 79.39 36.69 33.62 31.91 35.46 41.48 40.42 39.65 53.80 18.01 12.99 53.86 10.14 63.74 8.98 33.08 16.94 41.03 24.28 52.05 34.32 64 ER20a ExonRegion 0 15.08 32.60 95.79 47.49 37.23 49.66 41.72 39.85 41.59 47.88 44.63 35.17 11.33 70.77 24.86 62.05 9.67 38.15 12.41 27.94 33.20 28.89 25.44 65 E20a_E21a KnownJunction 0 14.00 36.70 107.03 67.86 23.26 41.00 54.14 35.49 63.37 67.37 56.44 50.87 8.28 81.99 35.11 76.22 13.18 50.95 14.12 34.64 54.55 32.58 48.57 66 ER21a ExonRegion 0 10.89 27.13 96.04 54.25 20.99 29.12 28.81 38.11 47.02 54.83 60.33 31.91 11.74 67.79 38.98 66.48 11.21 39.48 9.51 26.65 48.89 24.50 26.99 67 E21a_E22a KnownJunction 1 9.78 25.00 96.98 64.19 32.43 50.08 51.80 47.56 54.37 52.27 56.12 30.16 12.66 90.65 5.19 92.28 8.51 45.68 0.00 33.36 41.95 25.60 31.84 68 ER22a ExonRegion 0 34.32 42.33 133.13 54.99 47.20 41.21 33.89 50.60 42.84 48.89 44.97 29.03 13.27 53.72 52.27 43.05 7.78 29.32 11.37 20.69 25.23 32.82 22.43 69 ER22b ExonRegion 0 2.12 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00