Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TGIF1 Gene 0 57.47 16.67 14.21 9.81 21.89 13.54 6.19 10.26 8.90 5.53 13.50 7.22 1.78 29.35 19.31 4.10 3.11 15.93 2.09 9.21 119.01 404.76 246.00 2 401449 Transcript 0 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.20 2.15 3 345133 Transcript 0 3.43 0.55 0.25 2.03 3.93 1.48 0.00 1.71 0.50 0.00 0.01 0.00 0.00 1.67 3.85 0.00 0.45 1.36 0.00 2.38 9.91 8.83 4.37 4 405385 Transcript 0 5.37 1.35 0.00 0.00 2.87 4.27 1.77 0.00 0.72 0.00 0.00 0.00 0.00 5.70 1.08 1.28 0.00 0.86 0.00 0.76 23.06 25.09 25.16 5 407501 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 19.89 6 340165 Transcript 0 0.19 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 3.40 2.37 1.08 0.00 4.03 0.00 3.87 7.41 5.30 30.70 7 343820 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 457420 Transcript 0 4.67 0.00 0.57 0.00 0.25 0.00 0.76 0.95 1.05 0.50 0.58 0.00 0.00 6.41 3.52 0.89 0.99 0.15 0.00 0.64 18.87 9.41 21.87 9 330513 Transcript 0 2.82 0.00 1.96 2.23 0.90 0.24 1.32 0.73 0.97 0.72 0.94 0.15 0.00 8.34 1.73 0.75 0.28 0.75 0.01 0.13 30.26 32.47 20.29 10 400167 Transcript 0 10.40 0.00 1.20 0.00 3.29 1.69 0.37 0.00 0.00 0.00 2.97 0.00 0.00 5.12 3.15 2.74 1.01 0.01 0.00 0.00 13.98 28.89 45.84 11 472042 Transcript 0 36.72 1.66 8.64 3.42 12.57 3.94 3.46 5.49 5.57 2.42 4.98 5.61 1.18 9.13 6.42 1.14 0.72 2.96 0.01 0.59 28.96 114.42 60.20 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.59 1.65 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.20 2.94 15 E2a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.01 16 ER3a ExonRegion 0 6.85 1.11 0.49 2.79 3.86 2.97 0.00 0.96 0.99 0.00 0.02 0.00 0.00 1.22 1.89 0.00 0.89 2.73 0.00 2.20 9.26 11.78 8.73 17 E3a_E8b KnownJunction 0 0.00 0.00 0.00 1.27 3.99 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 2.12 5.81 0.00 0.00 0.00 0.00 2.56 10.56 5.88 0.00 18 E4_Aa NovelBoundary 0 3.19 0.00 0.00 1.60 0.00 0.00 0.00 2.18 4.37 3.12 12.16 0.00 0.00 7.42 0.00 4.36 4.77 6.55 0.00 0.00 41.82 98.34 318.40 19 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 2.09 5.87 0.13 0.00 0.00 0.00 0.00 0.00 0.00 11.40 2.16 2.57 0.00 1.72 0.00 1.51 14.79 13.07 19.41 20 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.07 2.21 0.00 0.00 1.77 0.00 0.00 0.00 0.00 16.54 4.82 8.20 0.00 4.35 0.00 2.62 27.06 32.39 34.06 21 ER4b ExonRegion 0 4.06 0.77 0.00 0.00 4.92 1.93 1.57 0.00 0.73 0.00 0.37 0.00 0.00 13.26 2.98 4.10 0.00 1.05 0.00 0.52 30.32 36.71 36.03 22 E4a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 19.89 23 E4a_E8b KnownJunction 0 10.74 2.70 0.00 0.00 3.65 2.67 3.40 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.32 37.11 30.90 24 ER5a ExonRegion 0 0.19 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 3.40 2.37 1.08 0.00 4.03 0.00 3.87 7.41 5.30 30.70 25 ER5b ExonRegion 0 12.81 9.61 0.76 1.93 0.99 10.86 0.49 5.64 3.91 2.51 7.73 1.13 0.00 24.73 11.90 3.21 0.00 47.61 7.46 14.12 118.82 239.94 593.14 26 E5_Ac KnownBoundary 0 7.41 9.80 1.18 3.36 0.00 5.79 0.00 5.09 1.48 1.13 2.00 0.00 0.00 12.07 0.00 0.00 0.00 14.51 9.22 3.26 106.01 65.95 58.99 27 ER5c ExonRegion 0 11.88 4.03 5.35 8.21 4.42 10.27 1.64 6.61 5.92 4.32 13.31 1.99 0.00 41.69 21.93 4.68 2.76 48.99 6.01 18.23 181.37 365.47 585.43 28 E5a_E8b KnownJunction 0 6.82 14.73 9.58 16.81 28.52 37.31 8.74 6.20 2.52 7.63 20.90 0.00 0.00 41.56 13.35 16.49 0.00 48.67 0.00 17.83 233.46 439.72 320.54 29 I5 Intron 0 1.36 0.40 1.81 0.60 1.59 1.18 0.52 0.89 2.83 0.51 2.68 1.59 0.19 4.77 1.01 0.29 0.00 0.91 0.47 0.84 31.41 24.02 30.53 30 I5_SR1 SilentIntronRegion 0 2.10 0.77 1.61 1.53 2.88 2.07 0.65 0.97 3.22 0.86 2.46 3.58 0.49 6.35 0.77 0.75 0.00 0.76 0.80 1.34 38.85 29.52 35.70 31 I5_AR2 ActiveIntronRegion 0 1.08 0.50 2.70 0.00 2.26 0.90 1.00 1.27 1.86 0.00 4.23 0.00 0.00 6.08 0.59 0.00 0.00 2.35 0.00 1.05 34.47 34.92 48.59 32 E6_Aa NovelBoundary 0 9.33 0.00 1.71 0.00 0.00 2.33 0.00 0.00 3.07 1.42 2.32 0.00 0.00 12.36 14.83 4.27 0.00 12.97 0.00 2.94 37.93 55.66 48.40 33 ER6a ExonRegion 0 5.55 0.00 1.14 0.00 0.50 0.00 1.53 0.18 2.11 1.00 1.16 0.00 0.00 10.59 1.84 1.78 1.98 0.30 0.00 1.28 29.22 16.01 40.08 34 E6_Ab KnownBoundary 0 9.85 0.00 4.55 0.00 3.90 0.00 0.00 1.60 1.13 0.00 2.58 0.00 0.00 14.13 4.45 0.00 0.00 1.82 0.00 0.00 56.09 26.15 38.75 35 ER6b ExonRegion 0 7.39 1.06 5.70 0.10 3.74 0.86 0.74 5.41 4.39 0.84 0.53 0.00 0.00 9.26 4.41 0.00 1.72 2.43 0.00 0.65 83.43 50.75 67.60 36 E6_Da KnownBoundary 0 3.33 0.00 4.85 1.27 3.40 8.57 0.00 4.35 1.79 4.38 2.58 0.00 0.00 9.71 4.45 0.00 0.00 4.85 0.00 3.26 79.20 51.31 53.27 37 E6a_E8b KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 2.24 5.19 0.00 0.00 0.00 0.00 0.00 8.53 2.82 3.67 38 ER6c ExonRegion 0 2.60 0.01 2.41 1.19 1.81 0.48 0.39 1.45 1.94 1.44 1.88 0.29 0.00 9.91 3.46 1.50 0.57 1.51 0.03 0.25 42.36 34.58 40.58 39 E6_Db NovelBoundary 0 3.41 0.00 4.52 0.00 0.00 5.11 0.00 0.00 1.42 0.00 0.00 0.00 0.00 15.13 4.82 0.00 0.00 0.00 0.00 3.26 25.02 24.37 39.44 40 E6b_E8b KnownJunction 0 3.04 0.00 1.51 3.26 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 6.77 0.00 0.00 0.00 0.00 0.00 0.00 18.16 30.37 0.00 41 I6 Intron 0 7.18 0.77 2.85 1.97 2.88 1.78 2.71 1.94 3.17 1.29 2.91 2.35 0.21 10.61 2.59 1.60 0.89 2.62 0.17 0.92 47.83 59.92 60.25 42 I6_AR1 ActiveIntronRegion 0 4.53 0.79 2.05 1.52 1.73 1.76 3.30 0.67 2.22 0.88 3.47 0.78 0.00 10.35 3.15 1.71 0.05 2.97 0.00 0.46 45.95 43.49 55.42 43 I6_SR1 SilentIntronRegion 0 9.80 0.75 3.65 2.41 4.02 1.81 2.15 3.19 4.11 1.69 2.38 3.89 0.41 10.90 2.06 1.50 1.71 2.29 0.34 1.36 49.86 76.21 65.23 44 E7_Aa NovelBoundary 0 0.00 0.00 13.90 6.29 0.00 5.62 4.42 9.24 6.19 0.00 0.00 0.00 0.00 6.71 0.00 0.00 0.00 12.77 0.00 0.00 16.56 35.70 53.35 45 ER7a ExonRegion 0 20.81 0.00 0.56 0.00 6.58 3.38 0.75 0.00 0.00 0.00 5.94 0.00 0.00 10.23 6.29 5.48 2.03 0.02 0.00 0.00 24.88 55.20 91.67 46 E7_Da NovelBoundary 0 29.04 0.00 4.70 6.96 18.51 2.90 4.11 4.72 4.54 0.00 0.00 13.95 0.00 9.59 0.00 0.00 0.00 2.32 0.00 0.00 77.53 67.48 58.90 47 E7a_E8b KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 2.57 0.00 48 I7 Intron 0 13.87 1.21 5.77 3.74 9.61 4.71 3.40 2.54 5.63 0.73 3.88 7.08 0.25 11.52 3.18 0.88 0.65 2.06 0.21 1.96 22.70 101.94 50.46 49 I7_SR1 SilentIntronRegion 0 11.86 1.43 5.75 3.67 9.53 5.00 3.43 1.86 5.99 0.43 5.09 6.66 0.24 13.79 3.00 0.18 0.21 2.20 0.40 1.10 30.45 96.86 59.52 50 I7_AR1 ActiveIntronRegion 0 8.04 2.03 9.56 2.09 3.21 9.17 3.00 1.73 5.02 0.00 1.68 4.33 0.00 13.10 1.55 0.40 0.00 0.00 0.00 2.13 15.13 106.26 58.93 51 I7_AR2 ActiveIntronRegion 0 16.29 0.94 5.73 3.88 9.86 4.29 3.39 3.34 5.25 1.09 2.58 7.63 0.27 8.96 3.43 1.68 1.17 1.95 0.00 2.93 14.20 107.84 40.20 52 E8_Aa NovelBoundary 0 16.30 0.00 3.10 2.06 7.56 8.69 8.97 3.70 1.79 1.64 2.58 18.01 0.00 4.94 4.45 4.36 0.00 1.58 0.00 0.00 13.53 101.16 36.19 53 ER8a ExonRegion 0 36.72 1.66 8.64 3.42 12.57 3.94 3.46 5.49 5.57 2.42 4.98 5.61 1.18 9.13 6.42 1.14 0.72 2.96 0.01 0.59 28.96 114.42 60.20 54 E8_Ab KnownBoundary 0 28.15 2.50 12.36 5.33 28.10 18.06 9.01 11.38 11.78 0.00 2.42 6.30 0.00 14.60 15.20 0.00 0.00 10.45 0.00 0.00 54.49 88.48 92.88 55 ER8b ExonRegion 0 76.12 28.22 31.41 24.99 29.36 28.35 13.33 21.54 18.98 15.74 32.41 11.61 2.76 80.37 46.29 12.94 10.28 50.41 5.62 35.07 421.74 853.90 582.91 56 E8a_E9a KnownJunction 0 169.36 22.69 28.68 24.77 35.48 15.56 11.26 28.09 28.21 16.47 30.74 6.30 6.17 81.41 42.65 8.72 13.46 67.98 16.00 39.05 419.41 885.44 573.30 57 I8_SR1 SilentIntronRegion 0 12.63 0.00 0.51 1.26 0.00 0.00 0.37 0.72 1.26 0.16 2.02 0.00 1.08 3.20 1.01 0.00 0.00 0.84 0.00 0.00 4.68 20.60 4.38 58 E9_Aa NovelBoundary 0 38.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 4.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.49 8.28 59 ER9a ExonRegion 0 161.53 54.15 36.60 26.22 62.34 37.28 16.84 26.27 21.50 13.52 35.07 19.46 5.17 66.48 49.03 8.86 7.57 30.67 4.74 21.25 249.95 1134.70 534.61 60 ER9b ExonRegion 0 3.57 4.70 7.20 2.47 12.88 1.60 2.23 0.22 0.00 0.00 7.01 0.00 0.00 3.05 8.16 0.00 0.00 0.00 0.00 0.00 3.58 44.54 29.92 61 ER9c ExonRegion 0 2.12 0.00 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.44 9.17 9.40 62 IG27_AR1 ActiveIntergenicRegion 0 0.61 0.91 0.28 0.70 0.15 0.74 0.15 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.49 1.34 5.57 10.87 63 IG27_AR3 ActiveIntergenicRegion 0 2.00 0.62 0.00 0.00 0.00 0.87 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 13.53 2.26 6.91 64 IG27_AR4 ActiveIntergenicRegion 0 0.63 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.51 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 19.79 0.63 2.64 65 IG27_AR6 ActiveIntergenicRegion 0 0.22 31.24 0.00 0.62 0.00 3.57 0.00 0.00 0.57 0.18 0.59 0.00 0.00 0.00 0.00 0.00 1.69 0.94 0.00 2.61 0.00 0.00 0.00