Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PTPRM Gene 0 83.02 17.87 98.40 109.48 65.21 439.08 46.10 99.03 236.74 42.58 0.42 0.59 6.86 0.23 13.38 0.00 2.13 144.94 62.83 27.75 83.93 400.29 361.40 2 332175 Transcript 0 7.19 0.43 8.15 10.91 9.93 67.13 4.78 22.09 54.54 8.75 0.00 0.00 1.04 0.92 0.48 0.00 0.00 36.71 30.42 3.77 16.29 160.62 171.63 3 400053 Transcript 0 0.61 2.97 8.83 15.84 6.18 341.00 6.72 16.11 84.66 8.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.38 42.39 13.29 2.14 0.25 0.39 4 400060 Transcript 0 3.85 0.91 3.01 5.19 4.23 39.63 3.49 6.91 18.54 3.59 0.00 0.00 0.00 0.11 0.83 0.00 0.16 13.76 8.74 1.44 7.95 46.77 46.29 5 444013 Transcript 0 0.00 0.00 0.00 0.00 3.79 0.15 0.00 0.00 0.51 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.00 1.84 0.00 0.61 6 IG45_AR7 ActiveIntergenicRegion 0 1.12 0.27 4.33 1.87 2.82 31.65 2.62 7.81 17.71 4.05 0.25 0.00 0.00 0.00 0.27 0.00 0.00 30.19 7.56 1.40 14.37 37.89 55.85 7 ER1a ExonRegion 0 4.58 1.28 4.92 5.60 7.26 50.87 3.05 15.75 41.33 7.54 0.00 0.00 0.00 0.29 1.43 0.00 0.00 29.99 16.62 2.30 21.43 133.40 169.88 8 E1a_E3b KnownJunction 0 9.93 0.00 15.43 20.31 10.95 134.64 9.54 48.80 120.63 18.32 0.00 0.00 0.00 2.47 0.00 0.00 0.00 80.13 74.64 9.01 27.43 342.91 339.15 9 ER2a ExonRegion 0 0.00 0.00 0.60 0.66 0.44 1.81 1.73 0.42 0.61 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.01 1.45 10 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 1.27 0.41 2.21 2.73 4.28 22.74 1.59 8.64 19.76 3.21 0.00 0.00 0.00 0.32 0.00 0.00 0.00 11.46 12.10 1.28 5.29 60.84 64.61 12 ER3b ExonRegion 0 10.46 5.03 11.78 21.00 20.66 182.78 18.04 41.74 106.97 16.75 0.00 0.00 0.00 0.37 0.86 0.00 0.00 79.53 26.24 10.18 54.44 237.25 238.04 13 E3a_E4a KnownJunction 0 13.71 12.17 14.84 35.39 21.56 195.57 9.76 26.57 109.08 21.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 109.85 28.05 15.02 33.73 220.26 202.57 14 ER4a ExonRegion 0 17.69 2.73 22.21 45.13 37.88 291.62 31.51 60.86 151.38 24.73 0.00 0.00 0.00 0.25 4.02 0.00 0.00 149.04 49.20 7.99 64.23 417.75 377.07 15 E4a_E5a KnownJunction 0 22.45 0.00 21.85 43.15 55.52 326.12 60.77 69.25 161.60 20.74 0.00 0.00 0.00 0.00 8.90 0.00 0.00 97.42 41.70 11.63 55.29 363.42 320.88 16 ER5a ExonRegion 0 30.86 5.69 23.45 48.08 44.23 283.50 27.25 51.96 159.10 25.39 0.00 0.00 0.00 0.00 4.08 0.00 0.00 159.26 40.12 10.48 54.48 447.53 403.70 17 E5a_E6a KnownJunction 0 38.75 3.16 30.04 42.72 24.19 212.21 33.03 64.65 190.48 27.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 199.68 58.35 6.33 92.11 565.37 413.07 18 ER6a ExonRegion 0 15.80 3.28 25.69 35.89 15.59 197.61 21.90 45.76 135.09 21.59 0.00 0.00 0.00 0.00 5.40 0.00 0.00 139.87 43.63 8.79 58.93 412.95 321.84 19 E6a_E8a KnownJunction 0 28.08 0.00 31.96 33.66 12.39 227.48 18.28 53.48 167.45 39.54 0.00 0.00 0.00 0.00 4.45 0.00 0.00 142.39 70.12 9.33 51.65 483.81 318.15 20 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 3.79 0.15 0.00 0.00 0.51 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.00 1.84 0.00 0.61 21 ER8a ExonRegion 0 24.09 2.88 44.79 41.05 27.58 329.38 34.76 72.75 210.60 37.49 1.13 1.04 3.06 0.78 10.41 0.00 3.85 215.03 100.91 34.37 104.04 443.80 482.15 22 E8a_E9a KnownJunction 0 47.34 13.81 54.76 52.41 38.29 383.07 28.93 87.08 213.66 41.85 0.00 0.00 6.82 0.00 19.90 0.00 4.02 241.26 194.36 46.92 112.93 649.14 640.05 23 ER9a ExonRegion 0 27.49 7.47 30.49 38.48 25.96 269.61 33.47 52.43 171.50 31.87 0.34 0.00 2.87 0.23 11.68 0.00 0.57 113.69 60.19 29.77 105.32 301.20 321.80 24 E9_Da NovelBoundary 0 3.19 6.12 1.15 0.00 0.00 0.00 24.20 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 13.18 0.00 2.66 0.00 7.34 25 E9a_E10a KnownJunction 0 37.71 5.46 48.96 77.45 53.31 381.48 39.57 90.73 235.62 44.62 0.00 0.00 0.00 0.00 26.08 0.00 0.00 225.76 59.30 54.46 111.08 486.50 619.39 26 ER10a ExonRegion 0 41.45 16.83 51.01 69.40 41.80 362.97 42.62 97.94 274.06 41.94 1.60 0.59 11.20 0.44 9.96 0.00 3.13 164.43 65.42 45.78 114.52 497.72 437.26 27 E10a_E11a KnownJunction 0 85.57 20.98 38.14 51.44 96.69 596.36 56.70 103.55 337.96 47.12 0.00 0.00 6.82 0.00 14.59 0.00 3.74 160.05 69.84 42.76 92.73 534.32 513.46 28 ER11a ExonRegion 0 35.04 16.40 32.55 65.55 55.14 540.09 45.04 106.24 331.18 42.58 0.00 1.65 18.89 0.00 10.50 0.00 1.92 152.57 82.73 44.80 71.82 599.86 461.29 29 E11a_E12a KnownJunction 0 48.60 19.14 53.04 94.03 51.53 617.94 79.63 135.75 415.13 61.94 0.00 0.00 11.69 0.00 9.27 0.00 0.00 169.88 138.07 62.32 58.87 870.01 690.59 30 ER12a ExonRegion 0 48.11 19.40 67.21 87.59 62.79 575.75 53.50 119.91 348.80 67.56 0.00 0.90 16.39 0.00 14.25 0.00 4.28 186.32 101.74 41.40 115.17 668.28 531.30 31 E12a_E13a KnownJunction 0 55.71 34.93 76.22 109.91 68.59 671.89 57.23 130.29 294.35 60.95 0.00 0.00 6.82 0.00 15.58 0.00 8.51 183.56 85.93 32.47 98.97 530.83 414.18 32 ER13a ExonRegion 0 54.39 27.15 53.25 78.97 57.20 455.69 45.12 99.91 251.50 48.57 1.91 1.77 16.44 0.00 11.07 0.00 3.04 161.92 86.75 36.42 135.73 482.63 415.55 33 E13a_E14a KnownJunction 0 45.34 33.48 64.81 57.47 89.73 513.06 85.19 112.17 258.10 55.12 0.00 0.00 6.82 0.00 15.82 0.00 0.00 107.94 105.60 35.54 83.83 434.15 395.49 34 ER14a ExonRegion 0 51.00 28.15 68.06 78.34 83.93 484.23 60.24 101.56 279.24 44.85 0.72 1.61 18.71 0.18 10.46 0.00 5.07 135.55 79.49 32.62 100.21 460.80 418.39 35 E14a_E15a KnownJunction 0 82.09 12.76 51.48 69.89 102.04 495.57 78.12 82.85 222.63 28.50 0.00 0.00 28.41 2.47 15.45 0.00 9.16 116.69 80.66 51.45 113.79 356.87 371.59 36 ER15a ExonRegion 0 66.24 10.83 41.17 56.50 95.75 332.56 61.08 54.98 151.55 23.99 0.00 0.00 12.55 0.48 6.19 0.00 3.39 106.07 37.62 27.72 84.75 353.64 292.47 37 E15a_E16a KnownJunction 0 56.82 9.08 41.28 53.34 82.68 314.59 64.57 26.90 115.02 18.96 0.00 0.00 6.82 0.00 0.00 0.00 0.00 80.83 20.52 8.69 74.44 370.89 240.04 38 ER16a ExonRegion 0 52.80 24.17 59.36 86.06 74.08 536.26 53.28 78.38 253.24 41.16 0.90 0.00 18.09 0.51 13.09 0.00 3.70 185.98 75.01 35.27 100.39 481.47 465.91 39 E16a_E17a KnownJunction 0 32.75 26.57 50.35 94.19 62.48 538.61 54.45 76.73 292.65 35.73 2.21 0.00 6.01 0.00 10.75 0.00 0.00 223.27 113.70 51.33 104.47 483.38 638.43 40 ER17a ExonRegion 0 29.32 23.24 65.45 86.18 49.57 385.81 43.61 79.13 290.72 46.19 0.51 0.00 7.22 0.00 12.85 0.00 2.30 243.08 98.18 43.35 128.26 501.94 489.01 41 E17a_E18a KnownJunction 0 56.31 5.39 64.99 53.14 59.68 322.83 51.10 71.14 264.64 32.37 0.00 0.00 6.82 0.00 15.20 0.00 0.00 158.52 64.66 31.26 129.30 350.99 382.00 42 ER18a ExonRegion 0 71.00 11.47 44.31 96.91 61.90 556.50 59.40 81.97 284.75 44.29 0.00 0.00 6.63 0.00 10.37 0.00 1.89 211.19 95.39 36.68 128.17 529.85 534.66 43 E18a_E21b KnownJunction 0 91.05 6.18 30.69 61.70 50.25 22.77 65.23 51.71 43.63 21.09 0.00 0.00 0.00 0.00 22.99 0.00 3.65 60.81 30.97 0.00 115.59 587.17 584.74 44 E18a_E22a NovelJunction 0 0.00 0.00 2.60 3.23 0.00 24.47 0.00 9.08 17.74 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 3.86 0.00 0.00 39.80 23.47 45 E19a_E20a KnownJunction 0 0.00 5.59 9.52 25.60 8.57 710.95 11.88 29.04 138.51 15.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 128.71 114.92 26.78 0.00 0.00 0.00 46 E19a_E21a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER19a ExonRegion 0 0.00 14.84 15.75 33.82 10.01 665.74 15.50 35.91 194.46 16.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 147.27 90.13 26.32 2.53 1.62 5.87 48 E20a_E21b KnownJunction 0 3.04 2.63 15.23 17.75 9.85 325.66 8.74 15.24 98.00 6.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.17 11.58 11.63 6.30 0.00 0.00 49 ER20a ExonRegion 0 0.00 6.61 18.79 35.21 12.04 666.59 11.25 35.87 186.19 19.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 136.12 85.47 28.01 4.41 1.22 0.49 50 ER21a ExonRegion 0 10.28 2.32 6.83 12.85 8.41 96.14 8.89 12.10 34.05 5.90 0.00 0.00 0.00 0.00 2.49 0.00 0.47 29.83 14.11 3.04 18.57 79.47 74.26 51 ER21b ExonRegion 0 39.89 19.28 46.30 53.52 43.46 397.72 29.05 60.07 169.40 32.10 0.00 0.00 1.50 0.00 10.80 0.00 2.08 141.50 53.44 21.93 97.12 282.52 332.52 52 E21a_E22a KnownJunction 0 54.08 10.06 77.88 74.72 44.57 536.91 59.49 70.28 234.20 39.27 0.00 0.00 7.95 0.00 31.89 0.00 3.74 133.11 62.12 24.10 72.77 414.98 334.11 53 ER22a ExonRegion 0 43.48 14.21 63.72 73.15 76.84 550.37 56.01 73.54 232.01 35.05 1.12 0.00 2.61 0.00 12.00 0.00 1.58 129.20 52.70 29.47 81.44 313.43 327.14 54 E22a_E23a KnownJunction 0 52.90 34.27 66.56 108.04 103.40 828.50 69.78 88.84 237.50 34.33 0.00 0.00 6.82 0.00 10.14 0.00 0.00 124.69 84.80 26.14 93.28 376.71 466.85 55 ER23a ExonRegion 0 44.34 22.84 81.56 124.09 68.60 606.25 60.63 102.23 267.86 46.47 0.00 0.00 5.73 0.00 12.89 0.00 0.00 149.12 104.37 32.72 93.82 457.16 500.30 56 E23a_E24a KnownJunction 0 51.56 14.73 93.46 132.35 77.59 645.31 64.12 138.54 299.42 39.81 0.00 0.00 13.64 0.00 4.45 0.00 0.00 122.83 121.42 41.99 82.23 677.73 575.35 57 ER24a ExonRegion 0 46.62 17.86 121.15 127.30 62.12 509.00 45.62 131.55 318.69 39.58 0.00 0.00 11.28 0.00 21.17 0.00 0.00 120.10 88.50 41.29 89.34 548.36 472.80 58 E24a_E25a KnownJunction 0 70.90 21.44 108.04 97.16 76.15 427.31 39.04 92.79 256.39 34.87 0.00 0.00 6.82 0.00 4.45 0.00 0.00 98.16 66.45 53.12 99.15 429.49 302.10 59 ER25a ExonRegion 0 48.90 17.33 101.78 129.28 54.36 402.71 34.91 102.14 286.81 42.76 0.41 0.00 9.43 0.00 10.07 0.00 0.00 127.04 62.15 34.45 89.86 443.34 374.96 60 E25a_E26a KnownJunction 0 38.82 19.08 116.47 145.27 79.54 537.53 81.52 146.18 325.29 45.50 2.68 0.00 6.82 0.00 6.30 0.00 0.00 153.96 96.85 54.78 95.45 516.63 466.94 61 ER26a ExonRegion 0 76.59 19.87 107.29 124.54 111.90 663.85 66.58 115.16 279.96 43.35 0.50 1.33 13.03 0.00 9.89 0.00 1.41 128.28 71.85 32.51 79.31 506.63 422.42 62 E26a_E27a KnownJunction 0 131.58 12.43 83.23 94.86 95.50 615.84 61.96 98.21 246.55 37.63 0.00 0.00 0.00 0.00 13.60 0.00 0.00 115.78 52.24 32.28 75.37 428.76 328.14 63 ER27a ExonRegion 0 42.00 17.87 68.23 76.19 40.59 408.44 33.27 67.96 193.41 43.18 0.00 1.01 9.17 0.44 12.13 0.00 1.11 106.53 43.90 21.40 70.40 324.11 283.70 64 E27a_E28a KnownJunction 0 33.78 11.31 86.28 78.54 22.75 273.88 13.20 91.64 211.40 49.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.78 55.34 30.81 65.98 289.21 243.37 65 ER28a ExonRegion 0 48.40 15.28 113.27 88.18 42.02 413.02 41.85 82.11 206.81 46.17 0.00 0.00 3.45 0.50 12.37 0.00 0.00 140.44 56.87 32.35 87.76 327.43 300.10 66 E28_Da NovelBoundary 0 16.67 3.35 6.65 12.25 23.01 117.26 15.28 17.09 79.57 8.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.24 19.39 6.52 30.27 89.03 121.98 67 E28a_E29a KnownJunction 0 63.05 19.34 165.04 107.91 36.84 440.60 65.01 62.97 184.58 47.12 0.00 0.00 0.00 0.00 25.47 0.00 0.00 197.44 90.36 30.74 62.02 276.41 367.15 68 I28 Intron 0 46.46 5.61 16.08 31.77 47.13 146.73 19.75 33.69 88.48 13.14 0.06 0.12 4.84 0.00 4.06 0.00 1.08 13.62 12.98 4.55 18.24 170.35 82.99 69 I28_AR1 ActiveIntronRegion 0 46.52 5.62 16.10 31.81 47.19 146.92 19.78 33.73 88.59 13.16 0.06 0.12 4.85 0.00 4.07 0.00 1.09 13.64 12.99 4.55 18.26 170.57 83.10 70 E29_Aa NovelBoundary 0 111.06 5.33 40.60 37.62 44.82 209.03 25.92 61.78 131.36 19.05 0.00 0.00 6.82 0.00 4.45 0.00 4.02 62.51 17.51 9.08 25.27 140.90 211.44 71 ER29a ExonRegion 0 116.14 17.37 177.94 172.73 65.79 643.71 61.98 125.06 307.76 54.88 0.66 0.00 14.29 0.00 27.54 0.00 4.25 260.16 95.82 39.43 119.59 497.53 497.35 72 E29a_E30a KnownJunction 0 254.34 3.16 198.90 229.64 93.12 659.00 96.72 154.19 325.31 76.91 0.00 0.00 20.62 0.00 43.64 0.00 9.07 294.73 125.18 26.91 127.94 632.85 600.10 73 ER30a ExonRegion 0 157.81 26.55 185.24 196.44 99.20 665.81 62.07 136.41 339.49 57.02 1.13 0.25 11.81 0.73 22.56 0.00 7.49 265.87 88.33 34.32 111.96 531.27 534.81 74 E30a_E31a KnownJunction 0 287.61 45.45 215.63 223.48 150.34 1040.42 123.08 188.41 387.21 72.77 0.00 6.15 0.00 0.00 24.60 0.00 4.77 302.73 134.31 35.54 99.40 748.95 647.56 75 ER31a ExonRegion 0 146.99 22.09 191.32 176.90 98.33 672.77 69.34 152.52 337.19 69.97 0.00 2.43 2.13 2.09 17.65 0.00 4.15 208.29 70.05 38.54 115.11 459.54 462.81 76 E31a_E32a KnownJunction 0 189.81 25.32 206.02 203.64 115.96 618.73 72.74 182.41 346.41 93.48 0.00 0.00 6.82 0.00 28.43 0.00 3.93 211.91 75.48 45.70 88.53 313.82 414.01 77 ER32a ExonRegion 0 153.73 18.32 186.89 198.19 95.75 631.71 53.87 161.56 325.31 64.95 0.00 1.44 4.36 0.41 24.18 0.00 2.75 213.12 77.21 38.58 109.96 417.50 454.69 78 E32a_E33a KnownJunction 0 195.52 24.80 204.37 183.59 116.72 703.12 62.36 162.32 278.56 47.81 0.00 0.00 0.00 3.00 13.35 0.00 3.65 179.53 68.14 19.81 126.40 362.20 368.68 79 ER33a ExonRegion 0 196.97 22.93 139.70 135.22 79.49 507.66 60.56 108.43 205.72 42.14 0.00 0.00 4.12 0.20 21.87 0.00 2.21 140.29 57.30 26.65 84.00 280.30 286.95 80 E33a_E34a KnownJunction 0 180.18 36.38 134.94 146.90 66.13 548.32 94.86 111.11 207.69 30.38 0.00 0.00 0.00 0.00 14.09 0.00 0.00 112.09 72.57 35.99 87.91 280.57 291.77 81 ER34a ExonRegion 0 184.74 29.76 181.19 170.77 99.57 699.96 59.53 151.01 255.47 50.92 0.72 1.97 2.90 0.00 21.82 0.00 3.71 178.97 74.27 26.96 96.10 324.49 360.39 82 E34a_E35a KnownJunction 0 206.56 40.72 226.99 242.36 142.78 771.60 67.92 154.85 290.77 56.11 0.00 7.65 0.00 0.00 8.90 0.00 0.00 208.10 77.18 11.38 107.99 418.22 475.39 83 ER35a ExonRegion 0 239.52 34.70 262.86 276.86 140.72 587.22 73.22 194.02 329.21 66.95 0.40 0.96 5.35 0.00 25.35 0.00 1.80 115.17 53.02 25.51 62.60 465.66 314.82 84 ER35b ExonRegion 0 17.99 2.03 9.19 9.54 17.39 37.59 7.28 1.73 4.32 3.44 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 8.81 85 ER35c ExonRegion 0 7.06 0.00 4.08 6.81 11.59 15.89 1.77 1.73 1.65 0.38 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 5.87