Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF24 Gene 0 32.46 87.47 49.14 53.06 95.73 142.52 109.60 43.60 42.93 75.05 76.88 125.27 78.53 101.66 33.39 75.51 83.38 62.27 56.51 97.03 34.43 80.53 66.15 2 261332 Transcript 0 13.27 29.29 18.20 18.95 39.69 49.88 45.27 16.13 15.50 28.03 28.70 41.69 20.60 37.23 11.72 49.96 33.90 25.81 25.67 41.68 18.94 28.48 45.96 3 399061 Transcript 1 59.42 89.13 43.76 29.93 66.98 208.74 136.82 55.20 72.77 96.46 119.40 26.26 53.08 77.99 31.52 534.99 156.15 281.43 228.15 214.89 75.80 124.92 454.90 4 ER1a ExonRegion 1 7.90 17.96 5.35 5.13 36.93 66.63 48.63 0.86 7.78 4.70 25.84 0.00 1.09 57.60 18.28 36.85 62.83 5.42 20.60 32.41 38.56 28.96 24.47 5 ER1b ExonRegion 1 41.14 77.60 31.24 25.20 101.44 245.09 168.63 29.26 46.39 54.63 101.93 15.95 20.16 215.52 50.59 272.29 180.22 102.73 111.82 183.91 94.60 131.37 246.37 6 E1_Da NovelBoundary 0 10.37 3.03 9.79 13.25 19.86 11.13 18.33 11.30 10.71 12.41 13.74 0.00 0.00 9.83 0.00 30.76 17.02 25.20 33.13 43.72 11.31 22.35 50.45 7 E1a_E2a KnownJunction 1 59.42 89.13 43.76 29.93 66.98 208.74 136.82 55.20 72.77 96.46 119.40 26.26 53.08 77.99 31.52 534.99 156.15 281.43 228.15 214.89 75.80 124.92 454.90 8 E1b_E2a KnownJunction 1 6.59 6.12 11.71 8.89 14.60 2.38 13.69 12.61 8.94 18.67 23.32 31.21 6.82 9.18 0.00 61.95 16.27 41.66 21.08 29.72 10.38 7.35 55.32 9 ER1c ExonRegion 1 7.20 5.08 12.13 11.58 14.18 2.38 16.15 11.23 11.49 21.68 23.00 21.21 5.16 20.46 1.74 65.39 14.85 27.90 25.80 34.04 13.22 10.63 70.48 10 I1_SR1 SilentIntronRegion 0 0.00 1.74 1.15 2.20 3.93 4.27 2.43 1.38 4.23 1.43 3.31 0.00 0.00 5.34 0.00 2.24 2.09 4.60 0.00 5.51 9.71 5.36 10.19 11 I1_SR4 SilentIntronRegion 0 5.65 9.88 15.46 16.75 7.80 8.43 6.11 4.35 2.68 6.22 7.50 12.12 3.75 3.81 0.46 5.05 4.01 0.67 3.06 7.75 2.68 10.11 6.42 12 E2_Aa NovelBoundary 0 6.59 25.65 60.02 35.06 28.78 50.94 20.58 3.90 14.00 9.83 7.37 12.60 13.64 17.31 0.00 6.41 0.00 4.31 8.66 9.52 0.00 15.49 24.76 13 ER2a ExonRegion 0 29.53 56.65 76.80 65.57 62.38 185.08 96.72 62.51 92.98 113.56 239.26 96.03 102.14 241.13 61.88 273.02 287.55 265.64 213.42 215.76 149.20 121.71 275.21 14 E2_Da NovelBoundary 0 3.56 15.52 34.53 23.01 9.85 38.67 3.75 9.86 1.79 8.62 2.11 0.00 0.00 7.42 0.00 7.69 8.70 4.73 0.00 6.52 2.59 0.00 3.24 15 E2a_E3a KnownJunction 0 44.30 39.01 42.46 58.40 48.90 134.64 105.11 42.92 66.38 123.75 152.93 111.79 131.48 270.71 83.44 201.91 227.58 272.64 111.53 274.78 136.71 84.44 184.04 16 I2 Intron 0 7.22 4.90 21.63 17.13 5.37 19.51 7.71 4.65 7.02 8.58 3.49 2.86 4.04 2.03 2.16 0.60 3.31 5.35 3.20 5.98 3.98 4.60 2.95 17 I2_SR1 SilentIntronRegion 0 7.31 4.96 21.85 17.33 5.44 19.75 7.80 4.70 7.10 8.68 3.53 2.90 4.09 2.06 2.18 0.60 3.35 5.40 3.24 6.05 4.03 4.66 2.98 18 E3_Aa NovelBoundary 0 10.89 6.71 25.63 29.33 11.04 33.45 18.81 7.97 7.99 15.74 0.00 0.00 0.00 2.65 0.00 4.02 0.00 4.35 0.00 5.56 0.00 2.57 7.60 19 ER3a ExonRegion 0 30.55 71.93 69.63 61.36 82.77 157.11 101.03 49.68 62.52 108.18 197.39 100.37 96.21 278.65 64.73 226.14 246.14 239.82 69.13 218.92 133.50 123.34 154.13 20 E3_Da NovelBoundary 0 3.48 6.45 36.66 26.97 19.61 21.46 9.72 13.02 10.79 4.67 9.69 27.61 13.64 9.30 0.00 27.26 0.00 7.83 16.66 12.59 18.90 17.08 46.01 21 E3a_E4a KnownJunction 0 31.93 68.41 27.32 51.58 95.16 108.69 117.96 40.83 81.31 97.43 156.14 79.38 105.19 271.35 80.35 155.09 201.40 204.57 84.14 217.96 116.82 110.34 92.79 22 I3 Intron 0 7.15 14.14 8.81 13.92 15.42 19.97 18.95 7.78 8.78 7.77 10.84 18.38 20.14 10.89 4.99 9.13 11.98 5.97 4.93 12.37 7.94 28.98 24.82 23 I3_AR1 ActiveIntronRegion 0 7.63 8.89 9.20 11.48 18.33 23.55 17.64 7.51 11.55 8.22 10.09 18.01 17.22 12.38 4.35 8.50 10.19 7.60 7.93 12.51 11.99 28.19 28.50 24 I3_AR2 ActiveIntronRegion 0 9.65 16.04 6.67 14.07 28.88 22.97 27.95 2.88 6.05 9.21 7.97 23.79 23.49 8.41 4.85 7.58 4.23 2.73 0.21 7.48 2.82 29.91 10.02 25 I3_AR3 ActiveIntronRegion 0 6.35 20.92 13.30 15.19 16.44 7.34 16.83 0.49 3.53 12.45 4.97 21.65 14.07 19.26 3.32 2.97 9.90 3.43 3.19 12.16 7.24 19.94 17.62 26 I3_SR1 SilentIntronRegion 0 7.45 23.52 12.44 9.27 18.50 9.69 18.50 6.96 7.03 10.66 14.43 18.29 10.44 19.54 5.43 8.16 8.09 8.43 3.72 15.10 8.88 28.64 15.92 27 I3_AR4 ActiveIntronRegion 0 7.63 17.07 9.70 22.02 19.46 28.58 20.28 10.07 7.57 7.43 13.87 24.02 17.55 18.31 7.83 11.99 17.96 10.98 4.48 15.11 15.74 42.11 40.17 28 I3_SR2 SilentIntronRegion 0 7.16 18.88 9.77 16.71 8.46 20.90 19.16 8.28 9.26 6.58 13.16 16.92 23.37 9.76 5.57 11.00 19.17 5.40 5.66 16.47 5.82 30.49 32.03 29 I3_AR5 ActiveIntronRegion 0 6.07 12.69 7.26 11.79 14.19 13.89 18.07 7.98 7.02 7.78 8.84 17.06 21.76 7.26 4.15 7.75 7.74 3.59 2.72 8.56 4.14 24.19 14.30 30 ER4a ExonRegion 0 46.52 121.79 73.92 72.01 158.68 227.58 186.80 63.87 77.35 110.65 210.22 279.54 148.29 284.21 58.39 200.36 226.42 138.69 100.89 193.29 87.16 154.18 132.17 31 E4_Da KnownBoundary 1 71.64 258.44 67.27 83.37 281.07 313.40 273.06 74.96 47.19 121.36 85.60 403.93 247.71 245.10 75.90 148.85 158.67 43.28 104.10 145.99 14.33 266.30 110.12 32 ER4b ExonRegion 0 31.38 87.98 43.60 50.18 93.06 128.12 102.61 39.80 33.81 67.09 42.63 114.33 69.32 61.69 26.84 35.66 41.67 28.25 35.21 70.56 13.58 66.98 33.58 33 IG37_AR3 ActiveIntergenicRegion 0 2.28 11.64 13.00 8.76 4.78 11.83 3.77 5.90 4.80 3.18 4.93 0.00 6.51 5.52 3.41 3.27 0.00 4.53 4.06 15.35 9.26 3.46 0.00 34 IG37_AR2 ActiveIntergenicRegion 0 3.98 5.68 8.61 9.46 0.71 7.55 4.09 8.13 2.36 3.95 2.73 0.00 5.52 5.59 4.01 5.51 0.00 5.65 7.40 7.32 7.58 4.11 0.00 35 IG37_SR1 SilentIntergenicRegion 0 7.38 12.73 10.69 19.58 15.96 26.64 16.49 13.24 16.44 12.18 1.52 9.07 6.20 2.24 2.54 2.23 3.34 4.04 10.04 16.60 3.64 3.36 2.97