Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HDHD2 Gene 0 71.62 132.82 196.66 115.06 116.22 163.28 89.32 78.49 91.16 126.08 67.12 73.83 63.70 93.58 69.50 62.04 64.52 79.34 58.16 100.01 38.11 37.46 33.81 2 300605 Transcript 0 102.73 246.47 348.79 197.59 234.96 282.29 149.70 136.86 155.09 221.35 134.16 124.08 112.00 193.94 126.56 126.06 127.16 163.04 118.07 196.91 74.25 64.02 72.44 3 IG30 Intergenic 0 3.14 6.45 16.21 11.69 17.16 19.44 11.19 8.74 13.26 6.92 1.57 7.08 2.55 2.29 2.00 1.66 1.56 5.15 5.75 11.31 1.34 4.22 2.97 4 IG30_SR4 SilentIntergenicRegion 0 6.78 9.72 19.36 17.50 37.73 45.53 19.18 16.28 26.09 11.80 3.94 8.50 6.76 4.02 1.64 2.73 1.37 8.13 10.82 18.43 1.72 7.23 4.26 5 IG30_AR4 ActiveIntergenicRegion 0 6.58 18.23 38.02 26.41 43.77 49.66 26.78 23.26 33.56 16.25 4.40 14.39 5.09 7.03 3.23 1.94 5.75 18.13 16.31 32.17 3.11 9.48 10.69 6 IG30_SR3 SilentIntergenicRegion 0 2.06 4.72 14.67 10.17 9.44 9.53 7.66 5.78 8.24 4.86 0.29 5.81 1.45 1.15 2.14 1.73 0.74 2.03 2.46 6.97 0.82 3.59 1.57 7 ER1a ExonRegion 0 33.21 182.64 45.36 30.73 68.26 178.80 62.71 33.23 43.10 65.06 44.87 7.57 3.81 36.95 51.37 35.76 47.15 44.44 29.45 65.80 35.44 20.21 35.00 8 E1a_E2a KnownJunction 0 17.26 80.31 29.66 23.24 26.57 72.17 17.22 9.65 17.59 31.51 22.01 37.06 20.13 36.26 25.34 8.72 22.63 17.78 3.67 28.25 14.64 3.12 4.27 9 I1 Intron 0 12.71 7.22 32.54 22.80 20.14 8.65 26.73 18.23 19.95 24.21 4.29 15.52 15.64 3.29 4.78 6.63 5.87 15.19 8.11 29.76 2.92 5.59 7.62 10 I1_AR1 ActiveIntronRegion 0 2.26 0.86 18.97 10.05 4.07 2.65 7.55 10.12 11.82 13.17 3.15 1.94 5.87 3.95 4.79 3.41 7.90 33.18 8.13 31.43 7.75 0.68 5.48 11 I1_SR1 SilentIntronRegion 0 7.19 6.41 17.75 9.80 16.56 8.14 12.63 9.82 13.80 13.64 4.60 6.06 6.10 2.85 3.11 7.67 6.56 22.67 14.50 27.97 5.51 1.45 9.28 12 I1_SR2 SilentIntronRegion 0 9.10 5.47 26.60 21.17 16.42 4.05 30.77 17.82 19.26 22.04 4.42 16.34 18.37 3.40 4.50 7.09 6.52 13.57 7.11 33.42 1.71 4.74 7.70 13 I1_AR3 ActiveIntronRegion 0 11.83 8.83 31.93 22.81 21.16 8.41 34.25 16.22 26.14 29.96 4.27 27.08 21.54 2.79 4.48 2.84 2.61 8.85 7.67 36.38 1.20 4.42 5.34 14 I1_SR3 SilentIntronRegion 0 25.12 17.14 51.84 32.42 33.58 13.81 30.76 21.04 25.49 36.07 2.17 16.45 18.34 2.87 6.31 6.67 3.70 8.87 7.51 22.17 1.01 10.11 5.85 15 I1_AR4 ActiveIntronRegion 0 43.04 11.72 121.25 81.55 46.11 30.58 38.61 57.37 53.54 73.13 9.49 32.95 16.68 6.23 8.41 15.03 12.69 48.66 24.08 53.73 6.84 17.22 20.57 16 I1_SR4 SilentIntronRegion 0 9.50 3.95 14.00 11.30 18.60 13.10 20.97 15.03 8.00 9.52 4.89 9.70 10.31 2.83 3.73 7.26 5.18 4.96 3.68 14.49 4.24 5.66 7.97 17 I1_AR5 ActiveIntronRegion 0 11.08 4.14 21.13 13.56 22.78 9.61 19.46 8.31 11.18 9.67 4.70 14.50 16.00 1.58 3.58 5.19 3.66 4.18 2.27 13.99 2.31 3.80 3.26 18 E2_Aa NovelBoundary 0 20.82 9.41 28.03 29.50 64.26 4.20 28.62 13.06 6.08 11.47 2.68 18.91 6.66 4.94 0.00 7.09 3.46 6.01 0.00 12.40 3.15 5.88 12.55 19 ER2a ExonRegion 0 77.59 125.88 228.86 130.84 94.18 73.01 63.81 79.91 102.47 142.12 114.23 57.22 50.96 97.13 74.02 67.88 97.69 109.72 64.45 168.56 75.50 37.02 51.88 20 E2_Da NovelBoundary 0 50.38 27.50 89.62 68.12 30.39 37.14 21.60 57.05 84.14 57.16 20.85 49.22 39.61 19.25 21.51 40.59 29.36 80.25 48.66 90.76 25.39 27.13 23.99 21 E2a_E3a KnownJunction 1 61.71 112.15 296.94 180.10 87.95 72.52 69.60 97.02 119.41 170.09 82.71 98.28 85.87 167.40 150.69 156.11 56.57 144.17 95.91 175.77 59.43 48.13 67.10 22 ER3a ExonRegion 0 122.08 291.56 434.35 275.41 275.95 386.34 189.70 174.34 194.78 268.88 155.73 142.25 144.94 203.33 118.52 129.54 136.13 171.93 134.73 237.02 96.29 86.51 71.36 23 E3a_E4a KnownJunction 0 119.87 415.72 408.80 256.08 289.81 241.22 132.53 199.09 193.72 274.23 172.41 141.20 210.54 216.08 166.27 100.06 143.71 206.40 123.49 215.59 92.48 64.79 76.40 24 ER4a ExonRegion 0 132.37 329.97 438.25 280.55 252.75 285.94 185.00 197.23 219.11 299.84 190.38 226.41 231.14 331.49 168.68 206.55 175.14 242.01 187.71 270.66 122.79 113.29 111.04 25 E4a_E5a KnownJunction 0 131.21 252.19 539.19 313.98 336.93 382.17 219.36 201.14 240.71 375.74 215.79 226.72 179.86 370.89 144.76 188.75 226.18 198.06 226.64 459.63 81.24 106.55 102.78 26 I4_AR3 ActiveIntronRegion 0 0.89 1.28 5.01 2.34 5.33 6.89 6.36 2.70 20.43 1.61 0.56 4.49 2.43 0.56 1.07 0.94 1.39 0.48 1.34 1.78 0.46 1.20 0.00 27 ER5a ExonRegion 0 132.39 248.67 480.62 255.51 241.87 379.20 181.39 188.76 219.17 323.04 169.81 207.36 186.24 272.23 162.44 173.70 176.13 239.39 147.23 266.89 111.11 80.92 91.14 28 E5a_E6a KnownJunction 0 98.68 349.54 426.06 162.42 265.45 351.39 148.30 157.40 169.21 232.11 140.88 127.84 110.71 234.39 176.65 137.83 148.85 168.51 86.59 238.22 59.24 69.44 84.17 29 E6_Aa NovelBoundary 0 3.04 0.00 5.14 2.03 0.00 13.63 0.00 0.00 26.59 3.33 0.00 0.00 6.82 2.47 0.00 0.00 8.32 0.00 0.00 0.00 0.00 0.00 0.00 30 ER6a ExonRegion 0 116.44 298.05 462.02 237.59 333.01 399.22 226.27 174.95 199.34 279.29 174.96 140.78 93.14 240.07 153.45 164.02 169.53 247.28 152.35 196.24 77.68 72.11 94.16 31 E6_Da NovelBoundary 0 10.00 6.38 5.88 5.39 0.00 18.40 32.77 2.46 31.83 6.45 2.00 0.00 6.66 2.47 5.81 3.93 11.97 11.11 0.00 18.09 5.75 3.12 15.37 32 E6a_E7a KnownJunction 0 241.23 450.77 644.86 363.36 722.16 765.13 398.48 227.88 251.88 356.03 237.32 163.25 112.01 283.01 214.48 247.46 230.20 307.05 260.53 201.85 131.46 111.69 142.47 33 I6 Intron 0 4.17 6.15 7.58 9.08 8.09 11.14 18.38 5.96 21.39 6.38 5.64 8.55 8.42 6.54 2.91 7.42 8.50 10.73 4.02 16.17 4.86 7.23 5.25 34 I6_SR1 SilentIntronRegion 0 4.41 7.65 2.95 7.92 3.31 9.34 19.05 4.87 20.39 4.37 3.82 6.67 6.27 5.04 2.95 5.61 7.15 8.35 2.87 12.92 5.29 7.51 5.19 35 I6_AR1 ActiveIntronRegion 0 3.98 6.25 11.57 9.02 9.17 15.17 19.04 7.55 24.92 8.96 7.14 10.28 9.74 7.40 3.36 8.70 6.56 14.40 4.85 18.77 4.51 5.57 5.10 36 I6_AR2 ActiveIntronRegion 0 4.25 4.69 7.18 13.79 13.17 8.73 18.27 5.04 21.59 6.96 6.11 10.40 9.96 8.06 2.04 9.42 14.94 8.92 3.59 18.22 4.93 10.39 6.35 37 E7_Aa NovelBoundary 0 9.85 12.23 19.75 44.55 17.15 23.23 56.26 15.16 17.68 12.25 6.79 18.61 6.17 5.12 0.00 11.45 4.49 19.32 22.31 9.08 12.42 7.65 0.00 38 ER7a ExonRegion 0 51.46 66.64 99.36 58.85 59.66 82.64 51.68 38.63 45.65 59.58 22.99 37.08 26.68 31.97 38.60 22.37 23.16 22.80 22.14 35.35 7.90 18.43 9.91 39 IG29 Intergenic 0 6.73 9.76 12.35 20.94 17.42 48.12 23.12 11.09 46.10 8.34 3.35 8.84 11.32 12.55 6.00 8.23 13.08 7.29 5.89 18.86 3.41 4.00 3.41 40 IG29_AR3 ActiveIntergenicRegion 0 1.56 6.22 5.35 9.87 7.74 21.82 15.05 6.92 24.64 5.81 3.05 6.26 5.98 8.06 2.60 6.37 8.82 4.80 2.64 16.73 2.09 2.56 2.91 41 IG29_SR3 SilentIntergenicRegion 0 7.29 10.44 10.21 23.83 16.71 41.89 25.24 11.50 37.92 8.60 3.19 11.05 17.94 12.62 6.98 6.34 14.66 6.73 7.99 19.34 2.58 4.09 3.04 42 IG29_AR2 ActiveIntergenicRegion 0 13.65 15.26 24.62 35.00 30.12 73.32 29.18 12.38 86.10 13.02 2.95 8.99 13.62 18.84 8.26 11.15 11.61 11.97 7.10 23.95 4.65 4.40 3.10 43 IG29_SR2 SilentIntergenicRegion 0 6.29 2.96 7.08 15.35 20.26 95.60 17.85 3.41 41.81 0.67 5.26 3.76 10.69 9.77 4.99 6.86 3.11 6.17 2.39 14.39 2.17 4.84 4.06 44 IG29_AR1 ActiveIntergenicRegion 0 13.63 15.85 24.68 32.58 32.85 93.25 36.59 19.82 77.55 10.77 3.98 12.79 13.75 16.04 9.90 13.64 16.21 10.94 7.35 18.60 4.74 6.34 4.95 45 IG29_SR1 SilentIntergenicRegion 0 8.85 6.97 17.73 27.92 22.81 79.61 22.79 13.90 79.22 11.71 4.70 6.24 5.10 22.83 10.03 11.04 29.94 9.39 12.12 24.12 10.74 6.02 4.80