Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ANKRD29 Gene 0 62.39 3.86 2.78 12.12 49.00 44.80 43.96 16.85 12.93 3.48 0.00 0.37 20.39 17.65 38.63 4.93 15.92 1.07 1.25 0.22 125.08 68.71 99.63 2 399631 Transcript 0 0.00 0.00 0.00 0.00 0.00 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 1.38 0.49 3 322980 Transcript 0 59.60 4.39 1.68 13.15 48.23 35.68 38.77 11.46 9.00 3.79 0.00 0.00 12.20 7.38 23.60 1.84 5.28 0.09 0.00 0.00 29.56 52.10 41.20 4 399636 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 284207 Transcript 0 19.04 0.00 3.67 4.76 14.60 15.45 18.50 8.42 2.40 1.58 0.00 6.00 6.49 7.42 13.35 0.00 13.65 0.00 0.00 0.00 38.92 50.64 60.27 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 7 ER1b ExonRegion 0 15.71 0.00 0.00 1.32 4.68 11.53 10.62 3.34 2.04 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 68.14 14.58 54.94 8 E1a_E3a KnownJunction 0 6.89 0.00 0.00 4.86 0.00 4.94 14.44 6.12 2.81 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 146.04 20.94 68.38 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.35 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E3_Aa NovelBoundary 0 9.41 0.00 7.69 0.00 3.82 0.00 21.15 0.00 0.00 0.00 0.00 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.93 2.57 16.65 11 ER3a ExonRegion 0 8.94 0.00 0.84 3.82 1.40 12.09 8.87 6.34 3.49 3.19 0.00 0.00 1.77 0.00 3.79 0.00 0.00 0.00 0.00 0.00 197.16 42.38 84.50 12 E3_Da NovelBoundary 0 20.08 0.00 7.16 7.39 0.00 5.34 14.53 8.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 57.45 13.96 43.36 13 E3a_E4a KnownJunction 0 3.56 0.00 0.00 3.90 7.89 0.00 3.84 6.33 6.13 4.81 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 143.63 58.48 78.36 14 I3 Intron 0 29.77 0.11 0.82 5.17 22.97 22.25 35.69 9.43 5.40 0.48 0.00 0.30 4.29 0.00 2.40 0.00 0.00 0.75 2.23 0.12 64.67 28.14 80.55 15 I3_AR1 ActiveIntronRegion 0 29.12 0.13 0.92 7.44 25.67 23.03 39.86 9.92 6.74 0.43 0.00 0.23 5.47 0.00 4.64 0.00 0.00 0.87 2.01 0.27 75.08 34.47 90.09 16 I3_SR1 SilentIntronRegion 0 30.34 0.10 0.73 3.37 20.86 21.67 32.43 9.07 4.35 0.52 0.00 0.36 3.36 0.00 0.62 0.00 0.00 0.65 2.40 0.00 56.49 23.16 73.11 17 E4_Aa NovelBoundary 0 42.38 0.00 2.66 2.06 61.55 28.17 12.50 5.67 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 128.87 47.95 75.97 18 ER4a ExonRegion 0 29.31 0.00 2.85 4.69 26.76 30.64 18.86 12.27 10.99 2.19 0.00 0.00 0.00 0.00 3.58 0.00 0.00 1.83 0.61 0.00 257.81 58.15 161.37 19 E4a_E5a KnownJunction 0 83.64 0.00 6.39 5.63 42.28 31.74 45.31 16.10 16.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.72 4.71 0.00 399.21 85.36 252.76 20 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 6.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.07 2.76 0.00 21 ER5a ExonRegion 0 45.60 2.10 2.04 6.69 27.81 31.06 47.84 13.48 13.75 1.23 0.00 0.00 1.94 0.00 5.60 0.00 0.00 6.50 1.03 0.00 380.15 70.63 195.92 22 E5a_E6a KnownJunction 0 58.23 0.00 1.36 3.23 19.44 19.19 37.36 8.01 10.45 1.67 0.00 0.00 0.00 0.00 17.06 0.00 0.00 1.70 0.00 2.88 223.14 51.07 142.13 23 E5a_E7a NovelJunction 0 0.00 0.00 0.00 1.90 0.00 0.00 2.25 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.73 2.57 22.19 24 E6_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 20.49 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.01 0.00 19.04 25 ER6a ExonRegion 0 43.66 0.00 1.51 7.12 16.27 37.94 28.77 11.56 9.48 0.53 0.00 0.00 0.05 0.00 4.16 0.00 0.00 6.01 2.03 0.00 304.51 58.68 168.40 26 E6a_E7a KnownJunction 0 63.27 0.00 1.36 6.99 30.14 68.60 34.05 21.73 18.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 3.86 0.00 309.57 74.22 205.21 27 ER7a ExonRegion 0 44.43 0.00 0.53 7.24 20.70 41.94 28.49 13.18 8.47 2.60 0.00 0.00 0.00 0.16 4.19 0.00 0.00 2.69 1.25 1.10 305.11 44.11 168.19 28 E7a_E8a KnownJunction 0 58.31 0.00 3.02 4.89 38.79 36.74 20.31 10.31 7.18 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 273.80 40.11 134.45 29 E7a_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.01 2.57 3.84 30 E8_Aa NovelBoundary 0 0.00 0.00 0.00 1.76 0.00 5.05 2.12 0.00 1.19 0.00 0.00 0.00 0.00 11.71 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 31 ER8a ExonRegion 0 43.31 0.08 0.94 4.46 17.60 25.58 16.54 14.23 5.58 1.67 0.00 0.00 1.99 11.98 32.85 1.14 10.20 0.00 3.60 0.28 227.98 44.34 122.18 32 E8_Da NovelBoundary 0 6.52 0.00 0.00 0.00 0.00 0.00 0.00 2.34 6.19 0.00 0.00 0.00 0.00 14.95 36.10 0.00 12.34 0.00 0.00 0.00 39.48 2.33 23.13 33 E8a_E9a KnownJunction 0 54.16 0.00 1.74 4.46 17.06 19.48 22.52 10.97 9.49 0.00 0.00 0.00 8.28 24.78 21.26 3.85 0.00 0.00 3.86 2.81 235.93 41.27 115.84 34 I8 Intron 0 11.58 0.62 1.11 2.24 6.41 7.94 11.42 3.52 3.99 0.52 0.00 0.00 5.96 8.04 17.14 2.37 5.52 0.42 1.45 0.32 29.81 9.27 28.34 35 I8_AR1 ActiveIntronRegion 0 9.66 0.00 0.00 0.90 1.01 4.41 7.44 4.97 5.32 0.00 0.00 0.00 1.77 7.81 19.64 3.35 3.74 0.70 0.00 0.00 45.41 6.87 22.67 36 I8_SR1 SilentIntronRegion 0 2.82 0.59 0.67 1.55 2.09 4.04 5.17 2.09 2.93 0.33 0.00 0.00 2.48 8.74 11.12 2.02 3.58 0.46 0.93 0.41 33.10 5.67 24.40 37 I8_AR2 ActiveIntronRegion 0 9.09 0.00 1.78 1.23 3.21 9.41 8.77 1.96 2.22 0.52 0.00 0.00 7.47 7.28 18.88 0.90 3.85 1.34 0.96 0.00 24.01 10.26 29.42 38 I8_SR2 SilentIntronRegion 0 21.93 1.01 1.64 3.64 13.33 12.42 19.77 5.13 5.32 0.85 0.00 0.00 10.14 7.68 22.12 2.96 8.55 0.00 2.54 0.42 24.36 13.28 33.63 39 E9_Aa NovelBoundary 0 52.97 2.96 3.05 10.82 11.21 11.41 47.96 0.00 2.52 0.00 0.00 0.00 19.48 6.59 45.12 7.69 8.42 1.78 4.80 0.00 22.92 24.25 46.27 40 ER9a ExonRegion 0 78.80 4.17 3.32 6.49 42.12 52.42 51.70 26.43 14.14 5.03 0.00 4.19 42.85 38.57 80.51 19.35 55.67 2.29 6.44 0.84 315.96 63.24 198.50 41 E9_Da NovelBoundary 0 18.52 0.00 1.54 0.00 11.38 0.00 6.32 0.00 0.00 0.00 0.00 0.00 12.82 9.77 8.90 0.00 12.25 0.00 0.00 0.00 0.00 8.39 20.66 42 E9a_E10a KnownJunction 0 58.53 0.00 0.00 6.93 45.16 77.74 54.59 17.25 13.66 1.34 0.00 0.00 25.97 26.49 38.57 0.00 21.13 4.19 0.00 0.00 220.05 38.88 114.22 43 E9a_E11a KnownJunction 0 19.04 0.00 3.67 4.76 14.60 15.45 18.50 8.42 2.40 1.58 0.00 6.00 6.49 7.42 13.35 0.00 13.65 0.00 0.00 0.00 38.92 50.64 60.27 44 I9 Intron 0 5.83 1.23 0.77 2.46 3.16 2.33 6.54 1.48 1.51 0.31 0.00 0.48 7.15 5.39 12.06 0.99 3.70 0.25 0.29 0.19 8.61 3.41 11.56 45 I9_SR1 SilentIntronRegion 0 5.84 1.23 0.78 2.46 3.16 2.34 6.54 1.48 1.51 0.31 0.00 0.48 7.16 5.39 12.08 0.99 3.70 0.25 0.29 0.19 8.62 3.41 11.58 46 ER10a ExonRegion 0 55.33 4.27 2.44 7.71 40.22 59.66 42.41 15.01 15.27 5.31 0.00 0.00 26.81 27.76 52.40 8.59 32.41 4.82 1.64 1.10 227.89 43.56 123.34 47 E10_Da NovelBoundary 0 6.22 0.00 7.54 5.63 0.00 8.18 31.36 0.00 5.09 0.00 0.00 0.00 26.46 6.59 24.48 0.00 0.00 0.00 0.00 0.00 57.58 13.10 15.71 48 E10a_E11a KnownJunction 0 63.49 21.18 1.83 13.55 24.19 52.64 37.58 25.84 18.34 3.28 0.00 0.00 14.93 19.48 56.12 23.58 20.76 0.00 0.00 0.00 236.05 47.39 148.53 49 I10 Intron 0 5.16 0.00 0.89 1.49 0.65 8.50 15.83 0.63 0.45 0.00 0.00 0.00 5.65 6.32 15.78 3.63 9.67 1.12 1.55 0.00 20.97 4.07 17.20 50 I10_SR1 SilentIntronRegion 0 5.19 0.00 0.90 1.49 0.66 8.54 15.91 0.63 0.45 0.00 0.00 0.00 5.68 6.35 15.86 3.64 9.71 1.13 1.56 0.00 21.07 4.09 17.25 51 I10_SR1 SilentIntronRegion 0 9.25 0.38 0.17 3.15 11.70 5.18 16.68 1.57 3.46 0.40 0.00 0.00 10.15 6.42 10.41 1.40 7.45 0.56 0.90 0.50 13.67 6.95 16.98 52 E11_Aa NovelBoundary 0 40.90 3.35 0.00 3.50 0.00 7.61 29.90 2.38 6.86 0.00 0.00 0.00 19.64 4.65 4.45 0.00 4.77 0.00 0.00 0.00 6.18 13.41 19.72 53 ER11a ExonRegion 0 84.21 5.60 4.75 16.74 72.21 63.26 62.27 25.36 19.74 4.12 0.00 0.65 37.35 34.02 66.99 9.16 29.80 0.76 2.01 0.34 122.30 101.05 124.56 54 E11_Da KnownBoundary 0 58.83 0.00 1.74 12.65 45.84 12.49 19.30 15.77 20.86 4.27 0.00 0.00 13.64 0.00 9.64 7.95 3.65 0.00 0.00 0.00 31.57 59.15 7.94 55 ER11b ExonRegion 0 59.60 4.39 1.68 13.15 48.23 35.68 38.77 11.46 9.00 3.79 0.00 0.00 12.20 7.38 23.60 1.84 5.28 0.09 0.00 0.00 29.56 52.10 41.20 56 IG30_AR1 ActiveIntergenicRegion 0 0.24 0.46 0.82 0.46 0.30 3.48 1.19 2.90 3.72 3.80 24.08 1.29 0.43 14.70 17.85 14.30 36.71 7.29 9.25 3.33 13.12 12.87 77.17