Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATP5A1 Gene 0 477.10 899.24 2715.89 1267.40 565.01 873.61 638.63 697.75 496.01 902.70 1364.45 638.52 337.34 1253.37 1241.67 1181.26 1163.30 846.97 879.13 827.06 803.52 544.64 501.01 2 490226 Transcript 0 0.87 0.42 0.00 0.04 0.00 3.16 2.56 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.40 0.00 0.00 0.00 3 487439 Transcript 0 10.64 14.26 40.02 29.14 18.03 27.75 26.94 5.41 9.40 21.14 10.76 6.25 7.56 9.36 10.48 15.13 14.64 8.39 7.55 15.15 5.79 10.89 8.50 4 282050 Transcript 0 51.50 105.07 61.06 51.11 25.42 47.07 75.91 39.47 18.12 26.00 9.34 13.71 8.60 24.90 58.03 22.79 11.00 7.70 20.17 10.28 2.94 1.04 2.94 5 484856 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 398752 Transcript 0 4.52 5.79 3.28 1.11 2.49 13.55 10.86 0.50 0.63 0.49 5.11 0.00 0.00 4.49 6.10 2.92 5.04 1.82 2.70 2.24 8.63 1.17 1.49 7 483666 Transcript 0 31.41 18.70 67.01 26.55 19.72 18.21 34.89 14.67 12.49 20.52 15.59 23.99 43.17 6.84 10.55 24.65 20.66 7.74 10.21 18.16 3.44 19.42 11.64 8 475026 Transcript 0 6.96 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 469552 Transcript 0 2.12 1.73 6.41 0.25 0.00 0.42 2.08 0.00 2.89 3.81 0.01 0.00 0.00 0.00 3.58 0.37 2.98 1.63 1.16 1.87 2.07 2.34 0.01 10 471790 Transcript 0 14.92 18.70 44.75 18.78 18.62 21.60 14.81 12.81 9.11 14.57 25.64 7.42 4.02 20.96 23.85 20.67 19.58 15.45 16.42 12.67 14.55 7.24 8.33 11 ER1a ExonRegion 0 0.87 0.42 0.00 0.04 0.00 3.16 2.56 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.40 0.00 0.00 0.00 12 E1_Ab KnownBoundary 0 3.04 0.00 0.00 0.00 0.00 8.35 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 1.30 0.00 2.50 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 3.26 0.00 0.00 0.00 14 ER1b ExonRegion 0 2.12 2.03 0.00 1.36 1.34 10.09 5.30 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 2.13 0.00 0.00 1.96 15 ER1c ExonRegion 0 1.58 7.07 3.46 2.03 8.62 8.88 9.15 0.61 1.56 0.89 1.80 0.77 0.57 2.04 1.84 2.34 5.50 8.44 5.31 14.30 2.25 2.13 2.97 16 E1a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E4a KnownJunction 0 0.00 5.39 1.83 0.00 0.00 0.00 4.15 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.49 4.48 0.00 6.20 0.00 0.00 0.00 18 ER2a ExonRegion 0 4.52 5.79 3.28 1.11 2.49 13.55 10.86 0.50 0.63 0.49 5.11 0.00 0.00 4.49 6.10 2.92 5.04 1.82 2.70 2.24 8.63 1.17 1.49 19 E2_Ab KnownBoundary 0 13.93 0.00 1.80 0.00 4.33 14.31 17.53 0.00 0.00 0.00 5.37 0.00 0.00 0.00 4.45 0.00 0.00 6.67 0.00 0.00 15.26 0.00 0.00 20 E2_Ac KnownBoundary 0 3.63 0.00 5.23 0.00 0.00 2.73 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 1.78 0.00 0.00 0.00 0.00 4.01 21 E2_Ad KnownBoundary 1 563.21 1348.71 522.39 355.50 300.59 910.84 844.57 148.85 89.47 180.08 555.67 40.51 30.36 508.57 689.17 341.36 512.58 431.94 767.65 341.64 784.20 275.43 332.32 22 ER2b ExonRegion 0 126.59 363.38 134.64 106.48 77.26 318.05 271.99 41.59 26.79 52.04 198.85 0.81 0.59 209.61 216.69 131.52 205.07 91.69 206.45 98.80 250.95 84.64 88.65 23 ER2c ExonRegion 1 635.66 1689.23 731.14 468.38 317.08 1179.13 1004.67 225.85 148.63 327.63 981.91 12.99 9.38 697.83 1140.68 781.67 1120.65 423.44 1022.50 502.48 1074.68 445.87 517.34 24 ER2d ExonRegion 1 732.71 1521.82 1235.57 634.13 305.35 1125.88 959.83 421.59 307.48 697.30 1395.76 131.64 95.89 786.83 1252.82 1270.33 1335.33 475.53 1010.96 809.56 1182.67 649.54 716.54 25 E2a_E4a KnownJunction 1 41.12 139.78 433.28 128.49 70.03 84.95 43.41 88.72 80.76 141.46 199.26 589.24 463.44 357.88 128.81 107.15 220.85 52.19 51.30 140.23 230.80 33.86 49.25 26 E2a_E6a KnownJunction 0 6.96 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 0.68 3.46 1.41 0.50 0.00 0.84 2.14 0.00 1.28 2.09 0.03 0.00 0.00 0.01 0.86 0.74 1.29 1.40 2.31 0.92 1.24 1.68 0.01 28 E3a_E4a KnownJunction 0 3.56 0.00 11.41 0.00 0.00 0.00 2.03 0.00 4.51 5.53 0.00 0.00 0.00 0.00 6.30 0.00 4.68 1.87 0.00 2.81 2.90 3.00 0.00 29 ER4a ExonRegion 1 175.91 437.01 1434.94 661.67 326.24 349.63 284.74 469.94 406.73 816.36 2825.65 542.11 357.69 1106.29 716.76 527.42 2408.53 434.20 669.61 1045.65 1939.46 389.93 245.23 30 E4_Da KnownBoundary 1 242.49 96.89 162.06 113.84 105.01 114.42 240.91 53.36 57.70 88.40 56.54 82.38 151.94 35.32 45.12 79.12 85.65 18.94 50.17 77.34 15.26 71.52 41.91 31 E4a_E5a KnownJunction 0 2.74 0.00 7.18 7.39 4.33 0.00 0.00 0.00 0.00 17.43 0.00 0.00 0.00 2.18 0.00 0.00 4.77 0.00 0.00 0.00 0.00 3.12 0.00 32 E4a_E6a KnownJunction 1 247.90 896.95 2826.36 1570.10 589.05 570.92 456.64 927.37 703.44 1464.76 3957.79 638.01 546.72 2743.61 2034.25 1715.02 3090.51 1280.00 2363.93 2361.74 2038.59 1165.09 712.10 33 ER4b ExonRegion 1 62.83 34.04 88.73 47.98 39.44 36.42 69.77 27.70 24.99 41.04 28.65 47.98 86.35 13.68 21.10 49.30 41.33 12.91 20.42 36.32 6.88 32.59 16.53 34 E4b_E6a KnownJunction 0 0.00 3.35 45.30 5.13 0.00 0.00 0.00 1.64 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 6.25 6.74 35 I4_AR1 ActiveIntronRegion 0 18.12 28.24 76.84 68.42 46.27 36.91 58.51 39.92 39.72 38.08 16.54 43.63 71.37 23.26 17.28 24.91 24.13 13.96 14.20 36.04 5.11 20.06 11.52 36 ER5a ExonRegion 0 29.18 42.78 92.21 57.83 41.88 66.32 80.83 16.24 28.21 38.23 24.59 18.76 22.67 22.95 31.45 41.13 39.15 25.17 22.64 36.24 17.38 20.49 13.03 37 E5a_E6a KnownJunction 0 0.00 0.00 20.67 22.21 7.89 16.92 0.00 0.00 0.00 7.76 7.69 0.00 0.00 2.94 0.00 4.27 0.00 0.00 0.00 9.20 0.00 9.06 12.46 38 ER6a ExonRegion 0 437.50 1300.46 3673.26 2080.68 1375.07 1824.19 1155.23 1030.23 781.19 1386.18 2692.65 1426.18 904.87 2744.26 2320.87 3043.89 2117.85 1956.61 2016.73 1878.74 1380.62 1207.17 1363.73 39 E6a_E7a KnownJunction 0 647.15 3073.73 5366.90 2989.46 1593.04 2791.57 2820.45 1517.73 1216.83 1994.96 3665.45 3740.87 1459.48 3748.03 2926.64 3133.88 2748.76 1809.65 2703.32 2117.70 1753.55 1640.81 1336.44 40 ER7a ExonRegion 0 970.14 2344.97 4803.79 2430.43 1223.51 1713.48 1364.46 1339.66 1014.00 1820.10 3453.97 2349.33 924.93 3543.74 2739.38 2398.22 3153.76 1387.82 1952.61 1999.50 1956.93 1372.31 941.50 41 E7a_E8a KnownJunction 0 1206.21 2465.15 6300.49 2899.20 1471.90 1743.60 1196.81 1681.45 1241.91 2247.97 3383.12 2815.97 1071.03 4205.09 3128.01 2803.88 3025.90 2386.26 2309.71 2071.88 1891.99 1436.60 1223.34 42 ER8a ExonRegion 0 1228.36 2410.60 5380.74 2461.55 1522.53 2054.76 1321.86 1469.43 1054.08 1890.04 3943.69 2766.87 1341.12 4317.92 3312.02 3298.77 3640.46 1974.44 2611.30 2219.56 2601.36 1629.15 1344.95 43 E8_Da KnownBoundary 0 1068.93 2433.58 4472.73 2001.41 1516.21 1872.16 1574.71 1121.73 778.72 1425.43 3214.76 2460.05 890.36 3333.53 3247.55 2512.33 2700.04 1485.52 2063.40 1987.63 1815.88 1297.35 1041.34 44 ER8b ExonRegion 0 870.66 2130.76 5467.31 2558.67 1518.28 1997.51 1575.55 1431.84 999.81 1825.00 3268.65 2044.03 818.06 3116.09 2991.72 2619.34 2841.07 1973.62 2002.15 1939.19 1814.19 1275.75 1179.91 45 E8_Db KnownBoundary 0 824.89 1963.14 4507.56 2215.00 1543.12 2025.59 1567.07 1182.69 802.39 1444.42 2441.30 1601.77 885.82 2655.67 2900.43 2301.62 2309.02 1570.67 1786.03 1533.44 1349.16 945.94 1141.82 46 E8_Dc NovelBoundary 0 228.71 541.94 845.27 387.93 380.22 503.06 404.13 197.81 132.81 244.36 592.31 378.27 225.15 883.22 936.77 849.69 613.46 224.47 508.72 543.55 338.73 376.10 443.80 47 ER8c ExonRegion 0 844.39 2142.19 5960.54 2897.25 1765.14 2343.26 1735.35 1564.25 1077.19 1972.68 3062.06 1632.80 866.16 3297.48 3192.30 3279.74 2792.26 2104.34 2299.40 2011.31 1653.28 1417.93 1587.92 48 E8d_E9a KnownJunction 0 1293.71 2523.63 6757.77 3437.23 2473.09 2824.11 2231.76 1773.86 1165.61 2112.59 3692.04 1565.76 829.00 3922.85 3675.39 3805.07 3015.14 2203.25 2948.60 2440.23 1823.61 1905.22 1756.86 49 ER8d ExonRegion 0 955.32 2111.22 6089.76 3022.38 1890.54 2490.47 1836.33 1604.63 1084.88 1969.96 3290.67 1544.44 891.96 3654.42 3372.05 3414.16 2802.76 2001.78 2475.61 2185.49 1669.61 1601.09 1654.13 50 ER9a ExonRegion 0 990.69 1415.39 5101.59 2471.93 982.11 1661.80 1254.82 1337.43 917.28 1657.81 2468.38 824.48 579.33 2561.22 2207.81 2485.04 2050.70 1747.58 1729.39 1519.75 1258.90 1113.68 1029.08 51 E9_Da NovelBoundary 0 1506.71 1858.68 5955.20 3057.42 1226.91 1635.54 1393.42 1435.33 977.83 1737.59 2425.14 1071.50 448.35 3237.05 3181.42 3607.51 1894.25 2390.37 2659.46 1696.23 1087.41 1508.49 1353.52 52 E9b_E10a KnownJunction 0 1833.81 2491.66 8778.11 4163.84 1698.98 2372.67 1677.43 2014.85 1347.09 2562.31 4134.99 1671.54 1069.90 3339.77 4076.04 3632.98 3411.31 2952.27 2875.38 2302.81 1958.59 1593.60 1432.65 53 ER9b ExonRegion 0 1384.67 2020.25 7267.81 3497.06 1347.49 1926.91 1388.54 1697.66 1150.21 2163.49 3523.32 1274.47 685.27 3263.10 3467.75 3686.98 2732.04 2852.10 2718.88 1950.90 1598.59 1578.23 1391.86 54 ER10a ExonRegion 0 866.99 1884.55 4417.63 2025.61 1072.09 2048.59 1398.95 1041.96 765.31 1401.74 1756.37 636.63 395.66 1176.18 1290.18 1551.86 1570.08 1427.08 1169.36 951.91 1072.32 680.01 664.90 55 E10a_E11a KnownJunction 0 1921.67 2718.59 9194.00 4438.73 1910.10 2204.01 1866.45 2014.72 1432.91 2402.13 3227.03 1609.72 878.35 2968.94 3824.47 4008.01 3136.88 2923.96 2798.76 2616.39 2030.19 1770.14 1365.81 56 ER11a ExonRegion 0 802.28 1154.58 4701.78 2156.05 637.54 1145.12 840.03 1166.18 852.22 1453.69 1578.62 613.34 330.89 1441.73 1694.29 1720.37 1415.16 1353.46 1261.55 1137.52 1025.00 719.73 643.11 57 E11a_E12b KnownJunction 0 2779.83 3695.66 8306.74 3854.12 3540.83 4533.64 3023.86 2087.42 1491.16 2521.32 4757.78 1625.18 799.79 3867.93 4868.55 4056.37 3775.78 2955.25 3156.33 2611.66 2708.57 1346.52 1709.23 58 ER12a ExonRegion 0 29.84 36.02 83.63 36.83 34.23 43.21 27.18 22.53 17.06 27.15 50.74 14.84 8.04 39.85 46.26 41.35 38.27 30.54 32.83 25.34 29.04 14.47 16.65 59 E12_Ab KnownBoundary 0 37.93 11.45 56.00 9.12 0.00 9.54 23.32 24.60 12.24 11.44 4.90 17.11 6.82 9.54 19.66 3.42 4.02 8.62 3.58 5.82 3.15 8.82 4.01 60 ER12b ExonRegion 0 1018.01 1502.13 4993.83 2269.84 1153.10 1703.77 1198.70 1210.13 854.86 1474.99 1858.76 643.07 413.91 1685.44 1992.56 1906.13 1450.30 1803.44 1413.23 1125.41 1072.57 672.18 787.98 61 E12a_E13a KnownJunction 0 1394.17 1837.50 7726.69 3392.28 1643.04 2284.54 1593.39 1691.63 1166.39 2017.20 3098.21 1747.62 922.83 3514.76 4539.23 2368.61 2260.77 1862.50 1759.86 2342.95 1718.21 952.24 1148.99 62 ER13a ExonRegion 0 642.34 721.29 4902.04 2086.65 519.46 679.37 435.01 1141.97 758.26 1437.75 1579.55 568.92 321.35 1534.79 2022.13 1270.20 1183.45 1279.10 923.10 1105.00 928.63 607.30 565.54 63 E13a_E14a KnownJunction 0 1875.00 2636.96 7316.86 2979.14 1622.75 2067.11 1655.70 1843.32 1140.47 2169.34 3174.28 929.25 529.35 3216.74 4991.17 2267.27 2606.54 1530.54 1675.91 2089.20 1978.23 1200.79 993.71 64 ER14a ExonRegion 0 381.98 866.82 4200.21 1559.68 545.07 862.27 720.33 985.91 631.39 1232.99 1025.99 372.36 217.67 956.71 1360.13 752.11 789.66 695.16 503.03 657.81 605.99 336.18 341.80 65 E14_Da KnownBoundary 0 20.00 6.45 42.72 7.09 33.62 2.50 12.10 13.43 17.13 15.98 17.48 7.65 6.82 4.94 0.00 3.33 12.72 10.07 3.76 11.38 0.00 2.69 4.01 66 E14a_E15a KnownJunction 0 751.10 1177.75 6160.72 2524.52 893.63 1044.06 702.01 1601.68 943.51 1742.62 2668.68 1544.15 861.14 1950.57 3440.89 1619.40 1687.80 822.19 1044.45 1406.37 1115.14 782.81 621.19 67 ER14b ExonRegion 0 0.00 1.37 5.87 0.73 3.02 0.00 2.44 3.10 1.15 2.00 0.53 0.00 0.00 2.07 1.43 0.00 0.90 0.36 0.00 0.00 0.06 0.00 0.00 68 ER15a ExonRegion 0 247.91 358.91 1884.09 839.87 138.60 182.54 168.53 492.21 290.14 544.73 505.96 317.71 128.06 405.72 721.57 345.72 321.10 177.31 247.65 262.63 195.12 184.87 138.34 69 ER15b ExonRegion 0 51.50 105.07 61.06 51.11 25.42 47.07 75.91 39.47 18.12 26.00 9.34 13.71 8.60 24.90 58.03 22.79 11.00 7.70 20.17 10.28 2.94 1.04 2.94 70 IG22_AR3 ActiveIntergenicRegion 0 0.98 6.19 6.05 17.39 15.50 6.16 9.84 15.76 7.12 13.92 0.58 2.71 7.77 0.97 17.02 17.52 7.98 11.72 5.04 18.01 0.72 0.00 3.42