Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SETBP1 Gene 0 38.95 50.08 110.75 40.82 81.67 104.93 102.94 78.04 46.38 68.17 35.91 1.66 25.21 2.77 14.78 0.12 0.17 84.18 117.84 49.46 88.16 102.20 64.75 2 426838 Transcript 0 13.78 3.89 39.12 7.06 4.71 6.84 13.84 20.38 12.59 18.20 4.69 0.27 0.76 0.11 5.13 0.00 0.00 41.22 24.16 11.63 17.51 10.99 26.09 3 282030 Transcript 0 0.00 1.29 0.00 0.00 4.38 2.17 4.21 0.00 0.00 0.52 0.18 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.32 0.77 4.41 0.00 0.00 4 383046 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 426288 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 IG16_AR1 ActiveIntergenicRegion 0 0.00 0.00 16.06 2.86 4.71 0.64 0.93 7.25 1.29 5.41 4.76 0.00 0.00 0.87 0.72 0.00 0.00 5.81 21.29 1.50 10.85 2.18 1.03 7 ER1a ExonRegion 0 7.19 3.04 28.39 3.14 6.74 7.64 7.65 12.83 9.24 12.34 6.30 0.82 0.00 0.34 4.11 0.00 0.00 26.70 22.11 9.25 21.97 10.67 15.24 8 E1a_E3a KnownJunction 0 30.23 5.66 75.57 14.68 0.00 9.65 19.34 40.13 24.86 38.28 5.11 0.00 0.00 0.00 9.52 0.00 0.00 91.65 43.01 23.39 23.23 19.72 55.91 9 ER2a ExonRegion 0 0.00 1.29 0.00 0.00 4.38 2.17 4.21 0.00 0.00 0.52 0.18 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.32 0.77 4.41 0.00 0.00 10 ER2b ExonRegion 0 6.88 2.43 3.03 2.95 11.81 8.93 16.14 0.42 1.52 2.61 6.22 0.00 0.00 0.55 3.18 0.00 0.00 16.24 47.52 6.11 22.75 15.41 23.11 11 E2a_E3a KnownJunction 0 6.74 0.00 5.88 4.83 0.00 0.00 16.74 2.42 4.57 5.61 9.84 0.00 5.68 0.00 4.45 0.00 0.00 29.68 92.05 6.39 36.94 5.82 7.34 12 ER3a ExonRegion 0 43.23 34.67 126.47 38.43 40.30 47.19 81.82 88.79 48.67 67.76 38.19 1.63 16.11 4.74 19.40 0.00 0.51 121.46 140.80 58.45 113.12 67.94 86.52 13 E3_Da NovelBoundary 0 14.22 9.27 42.75 26.10 16.47 0.00 20.09 43.42 14.79 16.57 2.53 0.00 0.00 0.00 6.06 0.00 0.00 2.57 66.35 5.88 0.00 7.41 36.19 14 E3a_E4a KnownJunction 0 35.71 38.48 91.04 25.77 20.46 53.15 54.32 99.85 56.51 67.02 49.12 0.00 6.66 7.06 20.15 0.00 0.00 134.97 199.63 79.83 112.99 105.75 89.97 15 I3_AR1 ActiveIntronRegion 0 12.44 14.35 21.34 10.45 7.33 4.84 16.84 16.09 9.32 12.51 2.12 0.00 2.61 0.00 5.34 0.42 0.21 3.07 5.71 2.93 1.63 1.02 7.50 16 I3_SR2 SilentIntronRegion 0 14.78 20.40 26.67 9.24 12.65 4.91 33.53 21.52 9.26 13.87 2.19 1.12 3.97 0.00 6.39 0.13 0.23 7.33 13.11 7.75 5.46 1.91 12.56 17 I3_AR2 ActiveIntronRegion 0 10.94 16.24 33.41 10.75 15.83 7.14 32.69 28.41 16.45 14.89 2.24 0.30 3.35 0.00 7.60 0.00 0.00 6.13 10.43 8.88 7.35 1.50 12.41 18 I3_AR3 ActiveIntronRegion 0 12.36 15.01 36.72 12.32 24.54 8.20 47.83 32.88 21.32 30.63 1.34 0.00 2.61 0.00 2.58 0.00 0.00 4.59 11.52 11.24 5.14 0.77 11.71 19 I3_SR3 SilentIntronRegion 0 28.74 13.19 41.61 15.22 25.25 9.47 36.88 33.39 11.81 16.70 0.40 0.15 4.88 0.17 7.17 0.00 0.00 11.67 14.56 9.48 7.29 1.22 13.14 20 I3_AR4 ActiveIntronRegion 0 26.07 17.37 49.31 14.07 29.40 12.58 49.44 37.61 16.64 21.06 0.80 0.59 5.64 0.27 4.01 0.00 0.00 13.28 14.76 12.08 4.03 0.92 14.67 21 I3_SR4 SilentIntronRegion 0 11.56 9.38 38.64 8.55 13.56 4.56 35.40 27.35 14.50 15.83 0.39 0.00 1.41 0.12 5.00 0.00 0.00 16.45 14.33 10.38 9.94 1.38 19.53 22 I3_AR5 ActiveIntronRegion 0 16.48 9.04 35.13 6.10 12.86 3.40 39.32 34.04 12.67 15.19 3.96 0.00 3.89 0.22 3.25 0.00 0.00 14.40 13.88 6.87 5.54 0.00 15.48 23 I3_SR5 SilentIntronRegion 0 15.53 12.42 25.37 12.09 18.47 5.18 31.07 28.32 13.05 16.27 1.00 0.19 4.61 0.12 6.62 0.03 0.00 11.12 15.84 10.64 8.03 1.47 14.07 24 I3_AR6 ActiveIntronRegion 0 9.96 3.66 20.60 6.81 8.42 2.56 24.60 14.37 8.18 6.34 0.87 0.58 2.43 0.44 2.38 0.00 0.00 5.97 10.46 6.41 14.29 0.91 10.31 25 I3_SR6 SilentIntronRegion 0 5.62 4.58 10.07 5.74 8.48 2.20 21.41 9.80 3.96 4.58 0.56 0.00 4.18 0.00 3.04 0.00 0.00 4.99 9.84 6.97 5.73 0.78 9.82 26 I3_AR7 ActiveIntronRegion 0 3.67 5.58 15.49 6.34 10.82 4.14 25.74 7.01 4.36 8.72 0.52 0.48 4.65 0.62 1.19 0.00 0.00 6.13 13.19 12.18 6.85 2.02 10.57 27 I3_SR7 SilentIntronRegion 0 4.52 2.83 7.23 3.15 5.76 2.63 22.05 6.26 4.13 4.29 0.88 0.20 3.75 0.07 1.70 0.03 0.02 5.08 9.56 6.78 5.66 0.69 6.50 28 I3_AR8 ActiveIntronRegion 0 25.30 8.12 27.84 11.03 17.92 7.41 31.89 18.44 6.89 12.00 1.59 0.41 5.81 0.00 4.25 0.00 0.00 10.35 17.77 6.95 8.46 0.89 9.15 29 I3_SR8 SilentIntronRegion 0 6.91 6.39 12.23 5.22 12.73 5.84 27.16 9.70 5.27 6.24 0.91 0.00 3.77 0.00 2.20 0.00 0.14 6.05 11.87 4.34 5.30 1.86 5.59 30 I3_AR9 ActiveIntronRegion 0 16.38 8.54 12.73 4.57 19.15 10.16 24.91 11.38 3.01 3.60 0.91 0.00 2.95 0.00 2.32 0.00 0.00 9.12 12.27 7.62 9.97 1.23 9.29 31 I3_SR9 SilentIntronRegion 0 25.89 11.70 27.85 9.86 18.72 6.94 23.30 13.43 4.93 6.38 0.71 0.12 1.92 0.05 2.76 0.00 0.00 15.41 19.97 5.50 6.06 1.86 12.43 32 I3_AR10 ActiveIntronRegion 0 20.56 6.19 17.14 4.77 7.63 2.11 10.06 8.82 2.72 3.90 0.43 0.00 0.85 0.00 5.29 0.00 0.00 7.19 9.67 2.31 6.08 0.23 4.90 33 I3_AR16 ActiveIntronRegion 0 27.26 0.00 5.61 0.14 2.35 1.61 26.27 2.07 0.62 0.50 0.00 0.00 0.00 0.00 4.93 0.00 0.00 1.92 2.42 2.60 0.00 0.00 1.12 34 I3_AR22 ActiveIntronRegion 0 4.70 7.08 9.97 6.23 8.41 0.61 13.91 17.44 8.27 8.61 0.05 0.00 5.43 0.00 5.63 0.00 0.00 6.44 5.87 5.67 3.57 0.44 8.26 35 ER4a ExonRegion 0 20.22 30.88 103.07 24.48 19.82 40.82 68.67 66.51 48.31 70.81 52.44 1.36 17.46 2.86 17.73 0.00 0.00 134.85 154.25 53.98 139.41 77.05 79.67 36 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 6.91 37 E4a_E6a KnownJunction 0 28.82 32.43 123.03 26.87 27.50 55.71 78.83 40.79 48.09 76.34 49.28 5.40 0.00 0.00 42.40 0.00 0.00 113.21 159.35 53.56 152.22 86.58 58.99 38 I4_AR2 ActiveIntronRegion 0 14.13 5.26 9.72 3.55 5.10 3.68 15.45 4.16 4.08 4.06 0.00 0.65 2.29 0.00 2.05 0.00 0.00 5.03 5.33 3.74 5.42 0.87 4.87 39 I4_SR2 SilentIntronRegion 0 12.67 8.77 20.24 10.50 11.68 4.39 15.53 13.00 5.77 7.38 0.62 0.40 2.44 0.04 1.84 0.00 0.00 7.16 10.58 3.37 6.04 1.14 6.52 40 ER5a ExonRegion 0 5.14 2.22 13.66 5.18 3.78 2.59 9.91 8.25 4.03 6.80 2.24 0.00 4.17 0.72 3.64 0.00 0.00 9.69 13.79 4.22 11.75 3.29 9.91 41 E5_Da KnownBoundary 0 0.00 6.71 13.36 5.86 3.23 2.44 16.47 4.03 4.83 4.78 5.11 0.00 0.00 0.00 6.30 0.00 0.00 6.51 23.06 3.26 18.78 6.18 4.35 42 ER5b ExonRegion 0 3.92 2.97 13.41 3.38 7.38 3.22 14.53 8.17 3.68 4.00 2.65 0.00 2.28 0.00 1.75 0.00 0.00 5.31 7.36 2.24 7.34 2.58 7.13 43 E5_Db NovelBoundary 1 3.26 11.97 6.71 7.99 7.98 0.00 12.14 1.64 3.59 2.71 0.00 0.00 35.55 0.00 0.00 0.00 0.00 0.00 3.48 2.88 0.00 0.00 4.35 44 I5_AR2 ActiveIntronRegion 0 27.06 10.82 24.23 8.54 7.81 0.74 15.33 15.38 0.52 5.97 0.11 0.00 2.70 0.00 2.75 0.00 0.00 3.02 6.32 2.30 1.49 0.12 3.74 45 I5_SR4 SilentIntronRegion 0 10.58 4.07 2.45 4.09 26.76 11.00 38.39 3.46 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 6.38 4.41 0.00 0.00 46 I5_AR4 ActiveIntronRegion 0 9.80 4.07 3.42 4.09 29.29 11.00 37.28 3.46 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 6.38 4.41 0.00 1.39 47 ER6a ExonRegion 0 23.19 35.44 98.34 29.35 37.84 65.95 76.33 74.24 51.56 70.18 42.86 2.82 34.20 4.27 16.42 0.22 0.24 137.25 151.31 67.11 140.38 97.72 85.93 48 E6_Da NovelBoundary 0 15.56 8.75 60.76 17.25 19.86 0.00 32.24 15.28 15.39 5.45 2.58 0.00 6.33 0.00 4.45 0.00 0.00 12.52 21.93 14.25 14.52 0.00 20.66 49 E6a_E7a KnownJunction 0 18.89 24.80 88.55 9.66 53.40 116.41 81.39 67.36 51.82 66.70 49.70 0.00 27.27 2.47 13.35 0.00 0.00 119.97 133.18 61.62 128.25 90.50 86.81 50 E6a_E8a NovelJunction 0 0.00 0.00 13.75 1.37 3.48 2.27 0.00 17.95 6.16 0.00 0.00 0.00 0.00 0.00 5.32 0.00 0.00 2.57 8.66 0.00 2.47 0.00 0.00 51 I6_AR1 ActiveIntronRegion 0 58.99 13.14 39.67 15.55 24.95 6.97 28.76 23.21 11.12 11.13 2.11 0.00 5.36 0.14 6.13 0.62 0.52 19.66 25.55 12.08 7.46 4.13 15.75 52 I6_SR1 SilentIntronRegion 0 13.58 10.28 20.04 13.67 15.84 4.89 25.87 12.92 6.72 7.82 2.00 0.46 6.99 0.17 2.07 0.00 0.05 11.77 16.13 8.02 7.04 3.37 9.80 53 I6_AR2 ActiveIntronRegion 0 4.15 3.92 7.31 7.14 10.90 2.03 21.20 5.37 4.69 3.27 1.70 0.68 4.88 0.00 1.33 0.00 0.63 2.27 2.50 6.91 2.10 2.11 6.37 54 I6_SR2 SilentIntronRegion 0 5.40 2.41 9.30 7.79 12.25 5.58 22.67 10.62 5.15 4.86 0.80 0.00 4.65 0.00 3.02 0.00 0.00 2.67 7.80 7.77 2.44 1.54 5.06 55 I6_AR4 ActiveIntronRegion 0 4.07 0.00 9.99 6.50 5.35 10.02 27.50 11.97 4.56 5.73 0.15 0.00 9.38 0.00 0.00 0.00 0.00 0.00 6.37 8.67 4.41 0.96 2.26 56 I6_SR3 SilentIntronRegion 0 12.68 8.90 19.53 12.82 11.10 5.88 26.56 12.13 5.98 7.73 1.88 0.42 6.52 0.16 3.66 0.06 0.04 8.09 13.77 7.58 5.61 2.12 6.93 57 I6_AR6 ActiveIntronRegion 0 6.36 8.42 7.65 10.17 7.01 6.12 29.10 7.55 4.70 5.65 1.40 0.00 6.74 0.00 2.73 0.00 0.00 4.36 11.26 4.96 4.14 1.84 6.94 58 I6_AR7 ActiveIntronRegion 0 9.23 10.01 9.70 11.12 4.28 9.39 30.61 11.06 5.93 4.54 1.08 0.00 1.31 0.00 4.29 0.00 0.00 19.81 13.76 9.53 6.08 0.00 8.69 59 I6_AR8 ActiveIntronRegion 0 13.66 6.10 10.36 9.42 3.16 6.84 32.50 12.10 6.29 2.71 0.00 0.00 4.69 0.00 2.11 0.00 0.00 20.16 19.11 11.03 7.41 0.00 6.14 60 I6_AR16 ActiveIntronRegion 0 27.41 4.01 13.24 4.67 6.44 2.73 8.38 10.80 3.77 3.56 0.58 0.00 2.71 0.00 1.78 0.00 0.00 1.48 1.44 1.73 1.99 1.08 0.88 61 ER7a ExonRegion 0 15.86 25.72 85.48 20.47 33.89 78.63 73.39 66.38 47.97 69.18 46.68 0.00 44.98 2.70 18.48 0.00 0.00 131.15 136.78 61.14 126.36 98.88 87.02 62 E7_Da NovelBoundary 0 0.00 0.00 1.57 0.00 8.06 2.67 3.89 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.02 13.18 8.95 10.44 0.00 25.27 63 E7a_E8a KnownJunction 0 3.04 7.96 66.41 13.15 18.76 56.50 39.75 30.76 39.93 49.08 24.06 0.00 6.82 2.47 24.23 0.00 0.00 70.80 75.20 45.13 78.83 69.74 41.74 64 E8_Aa NovelBoundary 0 6.96 2.50 14.78 3.63 0.00 5.74 2.25 3.37 0.00 13.86 5.05 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 2.49 36.14 12.92 7.77 65 ER8a ExonRegion 0 56.93 72.73 138.89 57.49 133.27 160.53 143.78 95.16 52.03 80.74 37.87 1.31 25.22 2.15 15.73 0.11 0.12 60.13 115.59 46.78 67.03 131.06 59.80