Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NPC1 Gene 0 54.26 32.99 89.55 41.14 55.68 83.43 61.04 44.08 61.92 83.85 161.81 58.59 195.73 158.84 203.86 126.18 176.45 71.78 89.86 46.30 133.75 335.27 549.07 2 412552 Transcript 0 4.20 3.00 1.86 2.16 1.10 6.59 3.87 1.52 2.06 3.93 20.43 10.38 44.44 8.25 10.46 10.54 20.74 6.53 0.81 2.12 11.05 81.48 37.68 3 269228 Transcript 0 37.75 25.51 35.50 33.46 39.80 70.00 55.77 23.43 41.43 55.06 119.89 51.95 229.60 128.67 131.81 111.36 132.82 48.29 68.89 39.15 76.98 237.36 445.49 4 IG30_AR1 ActiveIntergenicRegion 0 0.24 0.46 0.82 0.46 0.30 3.48 1.19 2.90 3.72 3.80 24.08 1.29 0.43 14.70 17.85 14.30 36.71 7.29 9.25 3.33 13.12 12.87 77.17 5 ER1a ExonRegion 0 0.00 0.33 0.25 0.44 0.00 0.73 0.58 0.00 0.49 0.60 4.56 2.25 0.00 6.30 8.24 11.29 7.26 3.62 1.91 0.00 11.19 6.50 14.21 6 ER1b ExonRegion 0 12.63 6.34 9.68 3.50 6.37 21.09 15.87 11.37 13.96 22.75 46.30 6.86 46.44 71.44 64.15 65.66 71.49 40.55 47.09 12.98 63.58 121.69 340.02 7 E1a_E2a KnownJunction 0 13.63 0.00 13.25 7.82 11.21 4.71 0.00 15.73 25.69 39.03 102.66 33.16 34.58 93.83 87.52 69.04 112.39 32.62 8.56 20.39 94.58 97.91 199.41 8 ER2a ExonRegion 0 16.61 10.32 32.17 17.89 15.18 30.43 23.68 29.12 45.94 60.87 181.69 54.73 248.46 168.10 151.17 151.41 202.27 91.49 125.21 56.03 129.73 372.88 826.61 9 E2a_E3a KnownJunction 1 5.93 21.05 34.98 12.69 15.45 39.18 50.92 32.98 45.60 57.78 181.94 90.48 576.42 120.55 187.65 122.19 246.47 105.79 72.57 65.45 143.82 256.08 518.67 10 ER3a ExonRegion 0 17.35 17.56 50.73 26.60 23.43 62.52 45.62 31.31 57.39 68.04 174.58 95.33 374.11 160.21 164.07 115.27 262.28 72.77 56.21 50.96 170.12 334.14 465.77 11 E3a_E4a KnownJunction 0 20.97 29.80 64.87 36.36 23.94 74.56 40.28 21.60 83.88 85.29 178.57 118.84 359.39 189.65 164.16 124.67 336.89 62.39 71.15 67.11 156.48 471.50 604.37 12 ER4a ExonRegion 0 26.76 22.55 65.61 32.61 37.92 67.86 52.82 38.89 80.71 95.86 225.24 131.73 470.12 251.39 185.17 176.72 306.18 97.09 114.71 69.21 173.27 498.72 786.69 13 E4a_E5a KnownJunction 0 23.41 39.99 70.49 46.48 50.25 62.29 65.63 35.65 83.56 99.17 227.06 137.14 441.85 273.00 190.37 252.50 274.61 93.97 160.76 66.47 219.00 570.39 996.36 14 ER5a ExonRegion 0 24.57 30.18 60.39 26.88 35.34 79.89 51.48 36.12 80.77 104.74 256.06 141.64 336.34 247.54 178.15 202.23 280.30 137.22 153.88 67.62 218.97 501.63 928.99 15 E5a_E6a KnownJunction 0 28.67 45.72 61.65 20.88 55.01 108.52 62.84 26.12 77.75 109.14 237.85 110.29 329.85 216.73 128.69 187.64 238.62 111.76 160.00 63.09 240.07 538.36 952.14 16 E5a_E7a NovelJunction 0 2.82 5.00 3.37 3.80 9.68 2.16 6.71 0.00 5.50 3.06 6.84 0.00 12.50 0.00 4.70 11.88 0.00 0.00 0.00 0.00 4.70 12.86 28.26 17 ER6a ExonRegion 0 30.05 40.78 52.73 24.91 38.20 58.87 45.63 30.90 67.79 85.03 167.30 92.48 234.75 164.93 169.40 146.55 184.59 74.35 103.45 52.44 175.85 369.82 625.38 18 E6a_E7a KnownJunction 0 31.49 55.85 76.85 47.31 56.79 108.69 69.87 42.35 79.66 99.42 198.63 67.82 222.55 202.84 155.63 192.68 216.92 79.84 175.35 70.44 172.24 517.48 841.68 19 ER7a ExonRegion 0 40.50 46.58 61.55 27.44 42.63 77.19 55.68 25.58 55.35 87.09 147.61 50.02 265.11 188.00 171.45 125.63 164.42 77.91 98.06 80.56 123.91 345.92 653.20 20 E7a_E8a KnownJunction 0 10.00 0.00 1.54 3.20 3.23 16.47 8.97 4.03 3.36 6.93 36.43 12.45 102.59 7.42 13.85 15.47 44.23 10.78 0.00 3.26 13.28 189.64 49.77 21 E7a_E8b KnownJunction 1 43.27 52.16 32.26 15.05 47.03 58.32 62.23 18.77 42.07 56.60 45.06 19.66 156.00 139.33 142.04 142.18 115.38 68.81 43.58 38.61 40.34 210.58 463.18 22 ER8a ExonRegion 0 6.80 5.36 3.82 3.09 1.18 9.17 5.93 2.06 2.61 8.20 40.74 26.81 68.37 19.27 19.75 11.15 31.49 9.13 1.35 1.96 19.71 123.73 79.23 23 E8_Ab KnownBoundary 0 8.96 13.42 6.15 4.40 0.00 11.58 1.77 3.41 1.50 10.99 39.54 12.60 49.02 11.65 6.30 7.18 22.44 2.57 3.67 0.00 24.71 78.07 68.29 24 ER8b ExonRegion 0 26.22 35.49 49.46 26.27 33.37 57.77 47.82 23.18 58.34 76.93 150.67 60.19 194.86 170.66 166.52 120.59 172.62 75.61 79.83 39.98 147.99 298.74 527.31 25 E8a_E9a KnownJunction 1 27.49 30.72 70.28 21.14 50.34 115.67 49.64 20.74 76.27 74.17 181.41 24.76 227.58 170.70 196.18 147.31 263.58 66.78 121.13 68.58 183.17 377.20 716.37 26 ER9a ExonRegion 0 31.05 17.88 71.17 46.46 48.56 82.45 64.49 27.13 67.03 80.17 183.33 69.98 278.59 184.18 164.27 151.16 202.20 69.77 101.43 57.31 180.82 342.19 619.26 27 E9a_E10a KnownJunction 0 16.60 20.33 22.03 49.34 24.36 85.41 51.05 33.93 48.41 54.74 122.98 61.52 258.59 131.56 166.39 119.46 158.77 56.29 90.54 41.10 120.34 278.00 456.35 28 E9a_E12a KnownJunction 0 0.00 6.31 1.83 1.90 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 6.82 0.00 0.00 4.27 0.00 2.57 0.00 3.26 0.00 6.06 7.51 29 I9_SR2 SilentIntronRegion 0 11.98 8.01 12.99 5.77 7.89 6.94 10.54 6.43 7.98 8.85 2.83 6.87 17.42 3.44 22.14 11.65 13.25 8.48 6.27 5.55 11.58 22.22 53.64 30 ER10a ExonRegion 0 30.43 27.60 44.40 36.68 47.61 76.13 54.53 22.66 47.51 53.90 146.71 67.69 241.10 146.25 149.66 104.70 151.06 62.84 56.04 43.14 143.07 226.51 465.91 31 E10a_E11a KnownJunction 0 37.78 27.89 38.14 41.02 48.22 75.92 50.96 17.74 42.62 55.47 144.77 49.07 319.46 143.74 154.77 108.86 158.30 54.26 106.26 70.50 82.78 223.62 608.98 32 E10a_E12a NovelJunction 0 3.33 0.00 0.00 0.00 4.07 0.00 6.54 0.00 1.65 0.00 4.47 0.00 0.00 7.24 9.39 0.00 4.02 2.11 0.00 0.00 10.07 5.20 23.39 33 I10 Intron 0 11.03 6.20 6.88 4.21 10.99 4.27 9.31 3.82 5.22 5.86 3.28 4.71 8.99 3.11 16.81 7.93 10.35 3.31 4.72 2.97 5.51 14.65 28.73 34 I10_AR1 ActiveIntronRegion 0 13.43 7.26 6.04 5.70 13.77 0.91 9.77 4.88 4.47 3.10 5.26 4.96 7.41 3.65 17.24 10.40 8.34 6.23 4.99 5.15 6.93 13.89 30.99 35 ER11a ExonRegion 0 48.52 19.35 39.81 39.36 44.60 93.65 62.87 22.59 56.76 66.24 156.47 68.94 293.06 159.83 130.47 127.63 154.73 38.43 76.97 42.06 89.52 288.03 490.65 36 E11a_E12a KnownJunction 0 71.49 22.63 56.18 46.48 50.51 89.44 89.25 44.98 46.96 87.54 214.11 73.07 301.93 171.64 156.99 167.39 182.42 55.38 106.26 22.63 62.83 410.88 601.04 37 I11 Intron 0 14.06 3.24 4.42 3.51 6.48 4.56 6.23 3.39 4.33 2.60 2.01 2.57 7.83 2.43 8.70 5.96 7.77 3.69 4.19 3.83 4.42 13.41 24.39 38 I11_SR1 SilentIntronRegion 0 14.10 3.25 4.43 3.52 6.50 4.58 6.24 3.40 4.34 2.61 2.01 2.58 7.85 2.44 8.73 5.98 7.79 3.70 4.20 3.84 4.43 13.45 24.45 39 ER12a ExonRegion 0 30.82 19.36 62.16 43.26 59.46 99.05 78.29 33.08 67.21 79.26 211.78 96.43 301.37 175.03 156.87 130.57 181.25 70.49 88.12 44.76 111.41 393.64 554.28 40 E12a_E13a KnownJunction 0 37.12 29.01 41.84 38.86 68.34 71.72 76.93 34.75 60.36 74.25 154.51 89.88 341.54 179.65 122.13 144.32 148.01 83.45 96.47 54.97 172.24 450.68 576.29 41 I12_SR1 SilentIntronRegion 0 20.74 5.93 3.80 1.71 11.70 14.25 5.40 9.32 6.76 3.45 0.98 3.46 5.94 0.73 10.06 4.53 14.18 0.90 7.46 4.84 7.70 19.25 31.35 42 ER13a ExonRegion 0 29.97 25.58 51.88 29.04 56.16 79.80 58.78 34.05 55.47 71.96 143.63 80.08 232.55 145.72 146.39 114.21 172.95 84.89 79.93 43.34 140.48 288.09 483.74 43 E13_Da NovelBoundary 0 6.15 3.16 5.29 3.70 31.15 5.11 28.13 10.64 5.67 7.25 5.32 0.00 14.61 7.48 24.85 3.50 15.99 6.26 8.56 0.00 5.93 5.51 31.93 44 E13a_E14a KnownJunction 0 30.52 39.73 49.64 37.59 50.34 105.28 76.67 44.94 66.52 79.94 145.88 47.42 164.27 133.79 124.48 93.82 131.09 64.50 103.16 50.43 137.95 271.51 653.54 45 ER14a ExonRegion 0 37.40 27.99 56.90 32.91 43.04 99.87 64.26 35.73 58.94 80.66 169.89 51.28 154.32 153.22 141.81 128.42 168.83 97.74 101.13 38.59 140.29 312.27 558.14 46 E14a_E15a KnownJunction 0 40.90 40.45 73.36 46.71 90.41 152.53 83.11 53.85 66.26 89.42 176.15 70.67 172.55 167.23 142.41 200.03 135.02 105.58 155.86 37.58 139.49 350.32 722.60 47 ER15a ExonRegion 0 29.04 26.93 79.13 37.27 46.47 86.75 67.04 51.56 57.93 79.88 171.98 38.19 129.27 155.56 135.68 131.03 188.36 70.10 96.68 43.52 151.95 336.65 594.00 48 E15_Da NovelBoundary 0 6.45 5.99 11.95 8.49 17.32 12.95 12.19 19.02 13.72 21.68 14.53 12.90 13.64 38.79 38.82 35.72 35.06 1.87 4.42 3.26 14.21 79.54 81.27 49 E15a_E16a KnownJunction 0 21.56 23.42 101.83 34.33 54.16 61.21 50.65 63.46 49.22 94.18 168.73 49.67 89.28 190.42 153.90 123.22 191.02 89.75 127.44 34.32 111.94 363.18 700.75 50 I15 Intron 0 13.35 1.07 1.92 3.20 5.63 13.50 9.75 4.06 5.81 0.90 9.15 0.00 14.22 10.00 14.00 7.81 19.09 0.00 3.35 3.36 15.06 37.25 35.51 51 I15_AR1 ActiveIntronRegion 0 13.63 1.09 1.96 3.27 5.75 13.76 9.94 4.13 5.92 0.92 9.32 0.00 14.51 10.21 14.29 7.98 19.39 0.00 3.42 3.43 15.36 37.99 36.26 52 ER16a ExonRegion 0 43.17 36.56 88.11 43.11 63.40 105.11 72.47 62.05 68.11 97.02 210.19 46.58 166.65 185.13 157.84 161.42 226.40 76.98 92.58 46.51 150.48 359.78 612.95 53 E16a_E17a KnownJunction 0 43.64 37.36 63.45 52.64 101.61 120.61 102.90 39.64 78.21 106.29 213.05 50.12 197.88 186.65 180.60 122.87 244.13 67.61 139.67 26.78 153.15 373.65 571.42 54 E16a_E18a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 8.00 0.00 0.00 0.00 0.00 8.54 0.00 0.00 0.00 0.00 0.00 0.00 11.35 55 ER17a ExonRegion 0 38.38 33.78 89.37 45.57 67.01 110.35 67.45 47.72 85.91 104.33 198.53 46.52 166.70 173.17 214.95 155.05 216.76 102.63 148.05 50.71 145.98 441.08 755.70 56 E17a_E18a KnownJunction 1 72.75 26.31 112.00 60.86 75.55 75.24 57.94 70.03 87.90 118.03 177.41 20.26 125.48 165.70 267.38 200.97 146.42 97.79 212.52 65.77 144.81 542.65 784.32 57 ER18a ExonRegion 0 49.32 36.34 92.69 37.13 50.84 81.70 65.66 50.20 71.33 90.26 189.46 43.95 101.00 160.30 222.35 147.42 209.93 88.65 132.60 46.47 169.92 378.15 658.19 58 E18_Da NovelBoundary 0 13.56 6.71 11.44 5.83 7.89 29.81 23.80 28.83 17.79 11.95 14.42 6.30 0.00 19.60 14.46 21.36 17.95 7.92 0.00 12.02 14.76 37.54 87.75 59 E18a_E19a KnownJunction 0 35.78 22.04 69.39 30.53 59.42 72.97 110.45 42.31 54.14 83.86 238.48 43.81 82.14 186.95 190.25 166.54 241.33 111.34 212.62 19.11 181.56 485.34 999.35 60 I18 Intron 0 20.32 4.87 10.13 6.40 5.62 25.03 12.32 9.66 12.42 10.51 10.73 2.14 12.54 16.54 16.97 12.48 17.33 5.93 3.82 7.34 11.89 35.95 40.52 61 I18_AR1 ActiveIntronRegion 0 20.44 4.90 10.19 6.43 5.65 25.18 12.39 9.72 12.49 10.57 10.79 2.15 12.61 16.64 17.07 12.56 17.42 5.96 3.85 7.38 11.96 36.15 40.75 62 E19_Aa NovelBoundary 0 35.93 11.97 23.51 7.79 0.00 55.76 19.87 9.61 22.60 17.59 22.90 0.00 6.01 24.55 20.40 17.35 40.86 7.17 4.61 5.69 11.31 45.56 97.66 63 ER19a ExonRegion 0 43.63 25.40 95.68 28.49 63.23 82.03 69.86 49.08 60.75 79.45 156.93 25.83 95.98 166.30 230.22 130.54 167.61 87.27 111.13 38.77 156.56 330.18 601.63 64 E19a_E20a KnownJunction 1 38.97 27.23 96.66 40.42 57.39 51.67 65.49 51.38 84.98 115.61 167.52 13.05 91.07 174.53 270.85 169.27 142.40 120.30 136.19 18.02 141.96 337.46 542.23 65 ER20a ExonRegion 0 54.41 30.57 128.23 38.59 41.89 96.95 51.69 54.53 85.08 101.32 187.98 30.67 108.45 197.38 242.57 147.28 190.08 99.99 135.43 51.67 183.74 386.30 676.47 66 E20a_E21a KnownJunction 0 70.16 27.89 135.09 33.33 37.27 95.34 96.27 52.45 72.05 94.58 160.62 23.71 200.47 184.71 277.77 123.04 138.48 87.72 96.57 53.37 169.76 367.46 579.02 67 ER21a ExonRegion 0 77.16 31.73 163.42 53.37 67.68 92.63 65.79 74.63 80.03 111.21 191.02 31.94 153.23 178.96 309.79 148.46 192.94 95.08 117.27 54.04 158.11 376.00 603.81 68 E21a_E22a KnownJunction 0 109.43 21.18 190.47 63.66 106.03 90.52 69.91 69.58 82.46 136.24 262.54 55.52 235.37 188.36 383.46 133.73 200.00 87.14 140.15 67.69 175.76 435.13 690.42 69 ER22a ExonRegion 0 68.75 39.34 151.12 59.86 75.51 125.73 70.09 51.93 66.48 100.74 187.28 34.02 169.83 176.43 328.28 139.89 181.86 91.22 99.05 51.11 166.13 320.78 562.61 70 E22a_E23a KnownJunction 0 111.13 50.71 136.48 58.07 129.88 151.39 89.03 45.02 70.14 107.64 162.46 42.16 126.94 160.93 335.74 116.55 125.76 102.10 77.08 54.27 136.71 283.14 513.03 71 ER23a ExonRegion 0 52.56 24.03 125.75 47.94 64.62 114.29 62.21 47.73 66.27 92.15 162.45 36.50 125.15 149.85 294.07 123.55 156.88 83.04 78.29 58.79 135.93 277.16 523.39 72 E23_Da NovelBoundary 0 20.52 3.35 25.58 13.98 7.81 21.58 29.24 11.99 20.86 16.52 33.43 12.60 13.47 16.66 56.62 14.53 43.29 47.63 4.05 9.14 28.42 45.99 92.36 73 E23a_E24a KnownJunction 1 58.75 28.02 132.22 55.00 42.19 121.75 74.55 57.46 63.80 95.79 132.98 12.60 197.23 171.82 349.59 131.08 142.31 39.63 83.01 31.00 85.56 260.67 582.09 74 I23 Intron 0 18.21 8.53 18.31 13.43 21.70 18.52 24.01 12.46 14.27 13.86 26.81 9.82 22.27 20.15 31.43 21.14 34.75 20.46 14.27 9.84 17.87 71.14 93.78 75 I23_AR1 ActiveIntronRegion 0 18.43 9.10 20.43 15.09 21.60 19.06 25.19 13.80 15.89 15.57 28.58 10.75 24.40 21.31 32.54 22.33 36.68 22.99 15.53 10.20 19.20 74.94 101.41 76 I23_SR1 SilentIntronRegion 0 16.82 4.04 1.21 0.00 23.04 14.58 14.91 1.71 1.22 0.00 12.78 2.36 5.12 11.01 23.06 11.81 19.68 0.00 4.22 7.05 7.30 41.37 33.07 77 E24_Aa NovelBoundary 0 62.60 8.75 40.39 24.64 33.19 25.67 40.98 16.55 19.85 27.99 15.11 12.60 6.82 17.84 39.56 11.62 14.31 7.96 13.65 15.28 20.82 82.42 70.85 78 ER24a ExonRegion 0 143.03 59.61 143.30 69.18 111.86 154.66 96.37 61.51 80.02 117.84 195.07 34.29 134.00 186.25 336.28 156.78 191.82 64.63 84.34 54.04 102.51 396.60 603.33 79 E24_Da NovelBoundary 0 47.27 12.30 16.06 11.69 11.71 0.00 14.35 10.15 5.61 12.20 11.79 6.30 26.62 14.07 4.45 0.00 29.92 8.12 9.22 17.19 10.38 48.68 45.93 80 E24a_E25a KnownJunction 1 204.93 46.77 134.41 67.32 201.44 207.89 104.22 53.52 37.85 98.26 142.77 7.65 161.68 144.15 294.21 103.90 143.52 26.61 46.21 21.22 91.74 281.98 504.15 81 I24 Intron 0 32.98 8.04 17.84 5.91 18.16 13.13 23.79 8.45 8.10 6.88 12.11 7.41 18.53 15.61 29.92 16.40 24.12 11.31 9.50 7.46 11.67 23.30 44.88 82 I24_AR1 ActiveIntronRegion 0 35.69 8.28 19.87 6.58 19.78 14.47 25.95 9.42 9.02 7.67 13.33 7.95 20.65 16.92 32.65 18.27 26.87 12.59 10.58 8.31 13.00 25.79 49.76 83 I24_AR2 ActiveIntronRegion 0 12.14 7.79 0.00 0.00 5.10 1.76 6.35 0.00 0.00 0.00 1.86 3.43 0.00 5.39 7.88 0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.77 84 E25_Aa NovelBoundary 0 41.12 0.00 36.93 13.25 30.90 31.35 28.48 8.50 14.41 11.98 21.01 6.30 20.45 10.36 25.47 8.72 13.09 20.02 0.00 14.32 10.93 22.47 71.28 85 ER25a ExonRegion 0 124.95 55.96 161.12 71.56 97.56 99.51 84.18 75.95 61.74 97.18 121.87 52.28 160.40 120.87 287.22 89.30 133.00 37.72 63.06 40.60 79.15 338.35 387.55 86 E25_Da KnownBoundary 1 24.52 19.60 42.28 19.11 22.24 14.08 42.79 11.13 14.44 19.61 11.69 57.02 75.16 9.54 52.17 8.72 28.42 1.74 9.22 32.02 0.00 51.25 43.71 87 ER25b ExonRegion 0 16.14 8.64 15.70 6.30 16.26 11.15 19.49 3.35 5.65 10.90 9.15 23.74 37.08 8.37 22.35 9.29 9.08 2.02 2.54 15.99 0.00 23.90 32.35