Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IMPA2 Gene 0 71.31 18.86 113.95 20.10 21.31 41.95 17.14 16.55 11.64 43.30 4.62 15.85 7.48 41.50 21.74 18.90 2.38 10.84 11.06 16.18 106.35 63.03 65.84 2 269159 Transcript 0 86.44 18.58 100.60 17.12 15.42 35.11 16.56 13.48 9.53 41.06 6.91 21.78 5.74 50.05 23.34 16.20 2.03 10.56 12.19 15.00 123.21 55.72 60.95 3 383376 Transcript 0 0.00 0.15 0.96 0.00 0.00 2.62 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.21 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 1.14 0.00 0.00 5 ER1b ExonRegion 0 12.56 4.98 18.83 2.51 3.69 6.83 6.17 1.00 0.44 10.87 1.11 0.59 0.00 11.14 7.47 5.10 2.18 4.88 5.44 4.81 38.15 13.82 21.51 6 E1a_E2a KnownJunction 0 11.11 6.05 52.16 13.48 18.59 5.39 7.91 5.96 2.75 39.49 6.95 0.00 0.00 31.43 14.59 12.13 0.00 5.80 37.74 18.09 54.24 41.88 73.24 7 I1_AR1 ActiveIntronRegion 0 7.94 10.17 25.49 3.95 0.00 0.00 1.32 0.00 0.00 1.15 0.77 0.00 0.00 0.41 0.00 0.00 0.00 3.70 3.19 3.94 0.00 2.08 14.68 8 ER2a ExonRegion 0 16.27 12.57 87.71 14.42 15.81 36.58 25.48 12.43 9.59 54.60 7.59 32.96 10.47 42.63 15.03 19.10 2.51 10.47 14.33 18.83 135.86 56.74 71.99 9 E2a_E4a KnownJunction 1 46.16 22.43 103.04 15.52 23.43 29.47 28.88 22.02 7.18 51.60 9.58 17.41 0.00 59.45 8.90 23.33 0.00 21.93 17.04 28.51 138.26 49.05 60.01 10 I2_AR2 ActiveIntronRegion 0 2.12 8.13 30.11 6.81 0.00 1.05 0.38 6.91 1.24 5.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 6.61 2.08 0.00 11 I2_AR3 ActiveIntronRegion 0 0.45 3.69 39.04 5.01 0.95 2.43 0.50 9.60 1.36 2.72 0.00 0.00 0.00 1.15 0.00 0.00 0.00 2.24 0.49 2.57 4.65 0.74 4.25 12 I2_SR3 SilentIntronRegion 0 0.80 7.71 37.95 9.63 1.60 3.11 0.32 10.09 0.57 2.25 0.00 0.00 0.00 1.01 0.00 0.00 0.00 6.88 0.00 3.72 5.44 0.00 4.57 13 ER3a ExonRegion 0 0.00 0.15 0.96 0.00 0.00 2.62 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.21 14 I3 Intron 0 0.28 3.26 29.39 3.43 0.95 2.28 0.41 8.25 4.01 2.96 0.00 0.79 0.69 0.12 0.20 0.00 0.00 3.27 0.85 5.11 3.92 1.02 4.57 15 I3_AR1 ActiveIntronRegion 0 0.93 6.26 36.07 2.58 0.59 1.21 0.29 7.64 2.83 5.06 0.00 1.57 0.00 0.00 0.98 0.00 0.00 0.62 3.20 5.19 3.41 1.84 1.53 16 I3_SR1 SilentIntronRegion 0 0.00 2.56 28.43 2.47 1.38 2.78 0.57 7.50 3.66 2.38 0.00 0.92 0.33 0.10 0.00 0.00 0.00 3.36 0.40 4.47 3.78 0.36 5.58 17 I3_AR2 ActiveIntronRegion 0 0.34 2.39 26.52 5.87 0.43 2.14 0.21 10.13 5.55 2.54 0.00 0.00 1.85 0.23 0.00 0.00 0.00 5.03 0.00 6.27 4.58 1.67 4.92 18 ER4a ExonRegion 0 32.41 19.81 95.88 10.16 13.89 31.05 12.19 16.92 8.83 45.93 5.82 34.59 15.45 53.78 18.95 18.96 0.00 11.90 11.19 23.34 142.55 60.74 66.09 19 E4a_E5a KnownJunction 0 33.04 15.19 50.23 14.08 10.53 44.69 7.11 11.62 11.66 47.84 6.95 36.91 0.00 65.40 23.24 11.02 0.00 1.66 12.52 10.23 120.77 64.85 56.85 20 I4 Intron 0 3.22 8.08 24.07 5.65 3.00 10.20 4.77 8.07 3.48 10.63 0.68 3.05 1.18 2.75 0.79 1.46 0.00 6.91 2.61 8.35 16.27 9.40 14.83 21 I4_SR1 SilentIntronRegion 0 3.02 8.94 26.78 6.02 2.90 9.51 4.89 9.31 3.39 11.21 0.80 1.90 0.70 3.38 0.76 1.30 0.00 7.66 2.87 9.22 17.36 10.52 16.29 22 E5_Aa NovelBoundary 0 2.89 3.35 31.10 6.76 3.65 5.56 0.00 9.16 1.79 11.77 0.00 0.00 0.00 0.00 4.33 0.00 0.00 2.11 4.14 19.94 23.54 4.78 3.67 23 ER5a ExonRegion 0 25.95 7.87 60.42 8.27 1.63 20.77 5.07 9.81 6.23 37.57 7.06 38.12 12.23 46.68 13.56 7.69 1.72 5.62 10.32 5.60 118.38 42.30 52.92 24 E5_Da NovelBoundary 0 7.04 9.47 11.59 3.50 8.15 5.51 18.72 7.56 2.95 7.20 0.00 5.70 8.28 2.12 9.27 3.76 0.00 6.22 0.00 0.00 37.93 5.57 0.00 25 E5a_E6a KnownJunction 0 36.23 3.35 78.35 13.68 3.90 26.41 16.47 10.02 6.08 25.22 10.63 54.02 6.01 47.56 24.11 11.02 4.77 8.50 32.10 11.57 153.83 47.76 85.36 26 I5 Intron 0 12.90 11.93 33.80 10.16 5.98 16.90 7.80 8.24 4.44 11.55 0.93 2.93 2.19 4.27 1.12 1.89 0.50 5.90 3.48 10.97 18.24 16.30 22.45 27 I5_AR1 ActiveIntronRegion 0 6.99 6.61 24.04 5.18 6.52 12.01 6.75 5.96 2.90 8.97 1.29 3.26 0.31 3.94 0.58 1.95 0.87 7.26 6.31 11.35 20.37 8.56 14.10 28 I5_AR2 ActiveIntronRegion 0 7.90 12.21 26.38 9.00 8.07 22.73 9.21 4.91 2.86 11.57 0.59 3.00 1.53 3.77 0.88 1.86 0.34 5.37 3.09 11.94 18.79 13.68 25.25 29 I5_SR1 SilentIntronRegion 0 17.12 13.66 40.42 12.39 4.90 16.09 7.56 10.48 5.66 12.44 0.96 2.79 3.12 4.61 1.42 1.88 0.45 5.68 2.68 10.44 17.29 20.11 24.15 30 E6_Aa NovelBoundary 0 27.78 18.35 66.76 3.13 8.15 22.66 15.10 8.79 10.21 6.58 0.00 6.30 6.82 0.00 0.00 3.25 4.77 9.66 3.95 0.00 11.80 5.45 4.10 31 ER6a ExonRegion 0 31.90 18.90 90.40 9.25 15.32 30.35 12.28 9.75 7.55 31.90 3.32 19.94 15.36 49.51 16.61 11.37 2.66 13.14 6.46 15.99 114.69 50.60 50.68 32 E6a_E7a KnownJunction 0 62.83 27.36 106.12 18.41 26.49 34.70 19.96 9.69 9.11 45.24 2.05 19.36 6.82 62.28 14.09 21.11 0.00 13.60 8.85 14.70 131.28 61.42 76.14 33 I6 Intron 0 2.30 3.93 26.69 3.70 1.43 2.17 0.92 5.70 2.79 3.93 0.03 0.66 0.55 0.38 0.27 0.81 0.03 3.85 1.56 4.71 3.84 2.06 5.50 34 I6_AR3 ActiveIntronRegion 0 5.63 3.73 14.03 3.85 2.82 2.28 2.28 6.04 3.08 3.24 0.00 0.48 1.20 0.21 0.59 1.39 0.00 0.87 1.98 5.77 3.47 3.00 13.68 35 I6_SR4 SilentIntronRegion 0 0.93 2.46 39.26 5.81 2.06 3.22 0.58 11.04 2.83 3.75 0.00 0.39 1.70 0.15 0.23 0.33 0.00 2.93 0.35 2.34 0.48 1.60 2.58 36 I6_SR5 SilentIntronRegion 0 7.60 15.59 43.23 10.50 1.93 0.68 0.00 11.46 6.47 10.28 0.00 0.00 0.00 0.00 1.88 2.15 0.00 8.25 0.00 3.66 9.39 0.00 2.39 37 I6_AR9 ActiveIntronRegion 0 1.84 7.33 37.02 6.50 1.39 3.99 1.48 7.84 3.92 4.67 0.24 0.00 0.00 0.17 0.25 0.82 0.00 6.74 2.37 4.92 4.03 1.29 5.83 38 I6_SR6 SilentIntronRegion 0 3.25 6.49 45.37 4.88 2.05 2.00 1.16 7.98 3.84 4.96 0.05 0.63 0.47 0.19 0.47 1.10 0.00 4.69 2.26 6.61 4.70 3.49 5.42 39 E7_Aa NovelBoundary 0 7.56 2.83 65.11 13.12 3.14 8.35 0.00 3.86 7.93 5.51 0.00 0.00 0.00 0.00 6.30 3.42 0.00 5.64 9.04 3.26 3.15 5.14 11.87 40 ER7a ExonRegion 0 84.08 20.15 139.41 20.36 21.70 60.62 21.29 18.74 16.96 49.52 3.62 15.25 6.20 52.69 32.26 16.96 4.82 11.60 12.13 11.30 150.44 59.37 78.99 41 E7_Da NovelBoundary 0 10.89 6.45 72.94 8.79 7.89 8.63 13.91 10.56 11.14 26.51 0.00 0.00 6.82 4.89 0.00 3.93 0.00 19.28 13.08 6.33 8.90 9.00 33.29 42 E7a_E8a KnownJunction 0 236.04 29.86 105.64 29.07 15.70 34.36 25.44 10.88 4.98 35.91 9.53 6.30 0.00 48.62 43.64 20.17 8.51 9.20 12.80 11.76 124.91 49.17 47.72 43 I7 Intron 0 10.79 11.58 88.00 9.61 6.72 21.01 4.60 17.71 4.90 12.63 0.57 1.07 0.29 2.29 0.67 2.64 0.24 10.79 7.06 12.90 19.55 12.01 27.13 44 I7_SR1 SilentIntronRegion 0 5.99 9.05 59.91 6.30 5.70 14.22 1.86 10.58 5.43 12.44 0.00 0.00 0.00 1.91 0.00 2.83 0.00 9.03 6.04 12.19 13.70 7.59 22.70 45 I7_SR2 SilentIntronRegion 0 12.04 12.18 92.91 7.67 6.37 21.14 4.10 21.23 3.99 15.41 1.19 0.00 0.00 2.81 0.62 0.84 0.00 15.84 6.51 13.96 24.81 12.48 34.47 46 I7_AR1 ActiveIntronRegion 0 18.67 8.84 111.37 13.61 2.94 21.19 2.81 21.99 5.15 12.33 0.00 4.75 0.00 1.80 0.04 7.22 0.00 6.54 6.81 10.49 21.49 12.59 24.15 47 I7_AR2 ActiveIntronRegion 0 7.41 21.24 108.10 11.89 3.42 18.44 6.62 19.78 5.63 11.85 0.00 2.41 0.00 1.62 0.00 2.97 0.00 7.39 5.31 14.42 17.51 16.78 40.79 48 I7_AR3 ActiveIntronRegion 0 8.51 12.25 85.20 14.10 10.54 26.34 8.31 13.16 6.39 7.04 0.00 2.22 1.30 1.89 1.66 4.22 1.11 3.68 9.64 12.15 11.76 13.64 14.64 49 E8_Aa NovelBoundary 0 10.15 18.35 86.10 9.86 0.00 2.73 1.94 16.55 8.16 18.43 0.00 0.00 0.00 4.94 4.45 4.36 4.39 4.52 0.00 12.66 13.41 14.51 24.07 50 ER8a ExonRegion 0 130.74 22.16 145.17 25.49 11.00 37.65 20.16 11.02 12.42 50.63 11.08 3.70 2.72 52.14 31.88 16.78 0.76 11.76 11.78 24.03 143.27 62.94 53.96 51 E8_Da NovelBoundary 0 3.19 2.96 46.01 0.00 4.33 0.00 0.00 7.56 9.61 4.08 0.00 0.00 6.82 0.00 0.00 0.00 0.00 6.38 12.89 5.62 0.00 0.00 3.50 52 E8a_E9a KnownJunction 0 277.68 24.47 146.68 20.88 14.52 34.75 21.86 13.39 12.44 49.61 15.53 18.31 0.00 59.16 45.00 19.82 0.00 13.56 7.81 15.85 141.90 70.91 61.89 53 I8 Intron 0 2.45 2.36 22.80 2.18 0.48 0.65 0.24 2.76 2.30 2.14 0.00 0.00 0.00 0.12 0.37 0.27 0.00 3.69 1.99 3.98 1.96 0.75 0.79 54 I8_SR1 SilentIntronRegion 0 2.47 2.37 22.94 2.19 0.48 0.66 0.24 2.77 2.31 2.15 0.00 0.00 0.00 0.12 0.37 0.27 0.00 3.71 2.00 4.00 1.97 0.75 0.79 55 ER9a ExonRegion 0 126.71 30.02 186.44 37.43 42.36 71.66 24.51 31.33 20.42 62.77 4.60 19.23 9.88 53.36 31.24 32.32 3.15 14.88 15.22 22.11 120.29 105.29 101.75 56 IG19 Intergenic 0 1.77 4.11 54.78 4.31 1.83 2.45 0.30 9.53 6.36 4.45 0.12 0.36 0.18 0.10 0.12 0.01 0.01 11.58 3.49 19.64 0.77 1.28 1.67 57 IG19_SR1 SilentIntergenicRegion 0 3.58 3.00 23.68 2.85 3.44 8.09 2.39 6.36 1.37 4.74 0.00 0.77 2.60 1.23 0.36 0.00 0.00 5.12 3.45 4.29 8.81 5.95 11.62 58 IG19_AR1 ActiveIntergenicRegion 0 2.12 2.03 30.02 4.88 11.82 10.39 2.54 9.79 5.46 9.84 0.00 0.00 0.00 0.00 2.90 0.00 0.00 2.16 0.00 7.62 9.00 14.58 17.38 59 IG19_AR2 ActiveIntergenicRegion 0 3.59 4.80 26.15 2.99 1.78 6.82 1.45 5.47 3.65 5.43 0.00 0.42 0.00 0.23 0.29 0.00 0.00 3.70 1.42 8.79 2.56 5.76 3.78 60 IG19_SR2 SilentIntergenicRegion 0 0.56 2.30 22.59 1.71 0.99 2.29 0.00 4.80 2.84 3.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.13 3.54 10.29 0.39 0.52 0.46 61 IG19_AR3 ActiveIntergenicRegion 0 2.43 4.09 30.30 3.31 2.09 2.73 0.64 6.69 1.97 3.57 0.00 0.00 0.47 0.00 0.00 0.00 0.00 8.19 1.20 5.69 1.32 0.00 2.83 62 IG19_SR3 SilentIntergenicRegion 0 1.46 2.89 44.79 4.04 1.20 1.70 0.00 7.55 3.99 3.73 0.00 0.80 0.22 0.08 0.00 0.00 0.00 10.33 4.24 8.31 0.12 0.61 3.31 63 IG19_AR4 ActiveIntergenicRegion 0 1.64 3.24 53.22 6.01 0.54 2.81 0.00 15.17 7.02 7.39 0.19 0.36 0.85 0.00 0.00 0.00 0.00 11.43 3.30 10.57 0.84 0.93 1.76 64 IG19_SR4 SilentIntergenicRegion 0 0.54 1.87 32.10 2.42 0.48 1.46 0.00 6.39 3.58 2.08 0.14 0.13 0.00 0.00 0.00 0.00 0.00 5.78 3.28 5.55 0.33 0.26 0.74 65 IG19_AR5 ActiveIntergenicRegion 0 0.00 0.96 17.01 0.81 0.00 0.00 0.00 3.22 0.76 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.42 1.92 0.69 0.00 1.11 1.58 66 IG19_AR6 ActiveIntergenicRegion 0 4.10 9.45 121.92 9.08 4.00 2.42 0.33 19.91 12.86 4.54 0.00 0.61 0.00 0.00 0.17 0.00 0.00 11.35 6.84 16.76 0.56 1.75 0.51 67 IG19_SR5 SilentIntergenicRegion 0 2.02 5.83 91.30 6.76 2.92 1.66 0.14 13.79 9.73 6.38 0.21 0.51 0.00 0.02 0.00 0.00 0.00 19.75 4.45 32.26 0.03 0.95 0.67 68 IG19_AR7 ActiveIntergenicRegion 0 0.96 2.77 24.39 1.08 0.30 2.02 0.00 2.82 4.73 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.42 1.45 21.02 0.00 0.24 0.00 69 IG19_SR6 SilentIntergenicRegion 0 0.49 1.90 17.84 1.04 0.53 1.73 0.00 4.83 5.35 2.01 0.19 0.00 0.00 0.18 0.49 0.10 0.11 8.83 2.23 30.88 0.15 0.07 0.49