Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C17orf62 Gene 0 335.43 226.30 320.07 123.60 162.72 149.74 115.72 273.20 218.70 306.60 386.08 132.09 131.79 577.25 782.89 590.17 440.18 198.30 155.74 152.96 194.96 173.78 174.58 2 437807 Transcript 0 25.21 13.41 10.71 2.19 17.92 16.32 11.32 13.28 13.84 12.56 57.94 12.51 17.60 51.65 84.30 81.63 70.80 21.05 15.85 9.21 13.54 12.28 7.75 3 306645 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 434650 Transcript 0 6.30 6.38 31.55 8.92 3.74 5.79 1.81 9.36 11.72 35.81 15.85 0.00 0.00 11.95 13.47 8.54 8.88 14.51 18.17 14.64 8.59 0.00 3.59 5 342572 Transcript 0 0.00 0.00 142.05 38.09 0.00 0.00 0.00 84.90 83.57 125.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.61 0.00 0.00 0.00 0.00 0.00 6 IG23_SR2 SilentIntergenicRegion 0 10.91 2.59 1.35 0.00 4.46 5.14 13.06 1.39 1.50 0.97 5.04 4.41 3.77 10.76 23.32 0.99 16.57 0.00 1.00 5.88 7.17 2.78 0.69 7 IG23_AR3 ActiveIntergenicRegion 0 6.38 3.88 7.49 2.21 14.30 5.12 21.68 14.50 8.83 6.23 12.43 60.22 39.51 32.39 43.17 33.60 41.86 0.13 8.35 6.94 6.64 16.24 4.60 8 IG23_AR2 ActiveIntergenicRegion 0 6.00 2.88 9.72 0.96 8.55 2.92 11.25 9.76 10.04 7.25 22.01 76.69 46.60 28.71 30.95 11.15 26.47 1.81 2.33 4.28 4.94 9.72 2.01 9 ER1a ExonRegion 0 7.08 1.81 0.89 0.15 3.50 5.25 4.10 1.26 0.43 1.32 3.58 2.14 0.00 5.01 10.67 7.19 4.28 2.49 2.44 1.73 4.38 3.96 7.43 10 E1_Ab KnownBoundary 0 31.04 6.71 5.50 0.00 12.22 23.91 26.14 2.26 1.13 8.76 11.37 0.00 0.00 28.08 71.82 24.69 14.31 6.05 8.47 14.38 18.72 19.41 36.71 11 ER1b ExonRegion 1 172.33 81.82 46.14 17.00 130.13 195.30 120.55 47.17 37.48 60.64 175.39 0.23 1.97 251.52 389.07 276.25 142.46 71.04 66.72 76.37 94.82 77.64 155.80 12 E1_Da NovelBoundary 0 204.11 25.85 22.38 9.29 0.00 47.36 78.08 19.10 10.53 25.47 36.38 0.00 13.31 67.63 144.01 86.22 54.79 55.13 37.46 23.78 20.14 5.76 14.77 13 E1a_E2a KnownJunction 0 34.23 18.09 6.56 2.06 11.38 30.44 14.04 1.89 1.36 2.66 24.74 0.00 0.00 28.25 59.95 47.51 25.53 6.92 0.00 2.49 10.93 7.96 7.85 14 E1a_E3a KnownJunction 1 389.40 181.35 92.52 35.76 286.59 343.21 244.26 109.34 83.07 120.02 313.61 0.00 6.82 307.85 436.49 539.17 261.06 128.71 121.32 133.59 160.62 148.67 263.86 15 E1a_E4a NovelJunction 0 77.87 2.89 7.33 2.06 27.16 7.72 12.28 6.98 3.59 11.12 18.74 0.00 0.00 34.26 34.74 3.76 20.57 11.94 11.67 11.19 0.00 0.00 0.00 16 E1a_E5a NovelJunction 0 32.60 2.83 8.40 2.06 0.00 21.69 10.42 0.00 3.30 7.52 0.00 0.00 0.00 4.94 9.89 4.36 4.02 4.39 10.73 3.13 0.00 0.00 3.59 17 E2_Aa NovelBoundary 0 148.54 43.48 113.69 50.18 86.16 69.28 84.09 105.19 118.05 146.67 192.73 107.74 101.29 383.25 253.29 361.02 260.12 137.42 71.34 108.28 79.08 46.60 119.68 18 ER2a ExonRegion 0 21.25 10.17 9.56 1.74 11.13 13.46 9.72 13.55 13.64 11.12 52.27 7.97 11.26 53.37 72.53 74.42 67.01 19.92 16.50 7.70 11.94 11.50 7.64 19 E2_Da NovelBoundary 0 104.76 40.06 102.92 34.49 68.59 64.68 81.22 92.09 79.34 122.03 107.97 52.22 53.89 263.47 283.08 288.39 151.47 85.68 96.00 45.70 63.57 42.68 74.44 20 E2a_E3a KnownJunction 0 20.15 11.97 16.00 2.76 31.24 5.05 10.20 24.40 26.53 23.91 96.81 29.56 41.56 73.34 120.40 122.96 119.87 36.31 31.06 17.45 17.73 17.39 7.77 21 E3_Aa NovelBoundary 0 150.69 56.31 89.06 48.75 81.41 47.64 109.88 78.66 67.82 115.80 128.56 48.17 42.53 337.10 241.18 283.17 173.73 101.39 61.08 36.82 49.92 25.60 66.84 22 ER3a ExonRegion 1 78.53 42.95 80.76 21.96 60.45 70.89 48.64 90.81 79.51 89.72 173.76 20.31 22.80 194.46 205.28 226.49 190.97 76.85 51.10 52.50 89.21 68.26 82.20 23 E3_Da NovelBoundary 0 232.19 118.53 99.73 39.72 43.21 88.36 71.90 128.15 102.78 141.00 113.66 123.94 143.17 254.99 267.26 351.10 168.86 74.04 111.63 69.54 46.21 68.40 80.33 24 E3a_E4a KnownJunction 1 38.90 21.31 93.82 23.41 48.39 24.70 17.84 120.26 92.27 111.07 412.74 41.86 32.95 320.68 219.30 259.85 361.38 39.92 71.44 112.49 185.64 89.34 52.50 25 E3a_E5a KnownJunction 0 6.30 6.38 31.55 8.92 3.74 5.79 1.81 9.36 11.72 35.81 15.85 0.00 0.00 11.95 13.47 8.54 8.88 14.51 18.17 14.64 8.59 0.00 3.59 26 I3 Intron 0 214.43 63.32 110.63 56.85 110.41 90.43 104.78 120.31 100.37 141.43 146.17 181.94 171.53 277.88 327.91 297.47 199.75 94.34 104.31 72.94 60.83 63.12 68.47 27 I3_AR1 ActiveIntronRegion 0 268.30 78.52 118.95 80.21 167.21 123.80 161.55 163.98 117.73 179.33 151.00 309.87 292.54 269.04 290.80 333.79 190.75 66.37 143.67 78.40 30.52 95.20 71.89 28 I3_AR2 ActiveIntronRegion 0 196.28 58.20 108.14 48.83 90.79 79.01 85.15 105.37 94.64 128.61 145.05 137.50 129.49 282.12 342.31 285.84 203.73 104.60 90.84 71.31 71.77 52.05 67.55 29 E4_Aa NovelBoundary 1 186.40 71.96 127.08 52.84 162.65 107.38 99.98 106.14 103.07 134.95 94.08 148.70 184.89 226.74 331.54 256.00 220.66 149.02 79.34 79.00 65.67 63.32 47.80 30 ER4a ExonRegion 0 51.40 20.14 114.48 37.71 41.41 28.86 22.92 154.45 113.98 137.14 399.37 79.58 77.50 401.16 376.96 273.15 391.39 55.08 55.97 107.70 171.52 141.38 81.95 31 E4_Da NovelBoundary 1 762.95 113.01 100.29 47.71 106.45 146.22 165.04 60.54 67.36 102.80 160.36 227.02 250.15 312.32 563.57 539.09 191.21 110.47 165.93 109.23 66.60 58.29 156.73 32 E4a_E5a KnownJunction 0 122.54 11.71 154.05 46.25 45.08 42.82 23.98 175.92 124.45 142.64 354.30 80.28 89.12 461.95 544.16 388.96 403.18 87.38 100.61 121.76 165.25 194.60 122.15 33 I4 Intron 0 87.27 41.01 79.59 29.94 47.42 62.02 49.32 46.58 40.27 72.95 66.60 40.42 46.23 142.06 140.89 140.83 96.12 54.89 35.43 38.68 34.27 23.55 31.60 34 I4_AR1 ActiveIntronRegion 0 87.58 41.15 79.86 30.04 47.59 62.23 49.50 46.75 40.42 73.20 66.83 40.56 46.39 142.56 141.39 141.33 96.46 55.09 35.56 38.82 34.39 23.63 31.71 35 E5_Aa NovelBoundary 0 143.21 41.37 139.82 34.43 55.01 97.22 136.99 68.76 68.55 120.05 94.87 24.31 11.69 173.00 184.44 118.43 111.17 90.41 44.14 43.91 74.38 22.84 47.72 36 ER5a ExonRegion 0 116.47 39.63 255.09 73.76 61.98 70.11 36.84 243.08 205.35 248.18 292.60 76.41 115.22 469.88 620.36 507.31 359.26 130.37 131.20 132.46 177.88 167.30 206.40 37 E5_Da NovelBoundary 0 62.68 17.23 96.95 33.40 23.34 37.99 28.18 52.25 59.55 74.70 49.12 0.00 0.00 109.72 99.14 79.38 103.69 46.64 44.71 34.71 25.82 12.12 29.11 38 E5a_E6a KnownJunction 0 171.59 78.60 358.77 103.58 134.21 123.00 44.69 306.08 296.32 324.79 378.67 93.93 131.81 487.79 682.74 555.07 437.96 174.06 143.72 149.44 162.91 187.86 195.57 39 I5 Intron 0 57.23 25.22 88.07 27.06 38.96 44.07 35.49 48.22 50.90 78.08 58.51 19.09 20.17 134.91 128.40 132.56 81.11 64.60 40.98 33.11 34.45 18.46 36.20 40 I5_AR1 ActiveIntronRegion 0 61.94 27.76 97.55 30.41 42.30 48.36 38.17 53.50 56.34 89.83 65.59 18.65 18.07 146.68 134.38 143.59 90.46 73.56 47.68 36.72 37.54 20.69 41.55 41 I5_SR1 SilentIntronRegion 0 45.07 18.56 63.13 18.20 30.29 32.89 28.63 34.30 36.59 46.66 39.79 20.65 26.36 104.31 113.90 104.08 56.40 40.74 23.01 23.60 26.42 12.55 21.89 42 E6_Aa NovelBoundary 0 140.47 37.76 116.85 43.38 33.87 58.72 65.54 74.92 67.97 108.07 53.17 43.21 6.82 156.04 192.72 264.63 113.70 79.88 40.28 37.46 50.60 21.74 39.61 43 ER6a ExonRegion 0 212.68 104.82 439.23 145.04 249.59 245.97 158.94 364.10 310.50 405.77 616.81 184.69 150.71 754.56 779.69 748.58 682.37 256.25 216.70 194.65 311.15 232.32 229.91 44 E6a_E7a KnownJunction 0 224.41 109.98 480.53 138.61 150.42 294.72 180.98 409.43 297.62 443.03 559.98 211.42 132.62 722.18 718.22 553.79 552.13 302.86 142.31 207.03 284.24 228.40 225.19 45 ER7a ExonRegion 0 219.43 117.79 496.53 164.09 99.65 181.60 99.54 403.21 345.53 497.21 649.55 224.62 231.43 769.32 1021.22 893.95 729.98 287.66 234.33 227.83 312.55 267.37 237.42 46 E7a_E8a KnownJunction 0 206.93 83.67 413.88 145.27 138.71 198.01 107.18 320.38 284.23 388.32 665.91 195.96 294.30 761.91 946.54 842.77 699.67 308.04 259.21 145.16 221.53 244.14 221.01 47 I7 Intron 0 19.78 11.60 64.20 19.62 10.59 12.20 10.90 31.00 24.20 47.92 34.90 11.46 9.44 71.30 65.12 73.44 50.19 43.93 21.19 23.25 22.68 7.59 16.74 48 I7_AR1 ActiveIntronRegion 0 21.02 12.97 69.21 20.57 12.45 13.70 9.81 33.08 27.51 50.67 31.31 11.19 11.33 74.73 60.84 75.12 50.81 41.75 22.46 23.48 25.18 6.82 15.91 49 I7_SR1 SilentIntronRegion 0 16.50 7.70 50.53 17.22 5.22 7.92 14.48 25.42 14.68 40.69 46.71 12.55 3.92 62.54 79.80 70.09 49.51 51.69 17.86 23.13 15.62 10.13 19.70 50 E8a_E8b KnownJunction 0 0.00 0.00 194.58 47.95 0.00 0.00 0.00 119.65 101.62 148.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.55 0.00 0.00 0.00 0.00 0.00 51 E8_Ab NovelBoundary 0 314.35 118.86 466.69 152.36 85.74 159.91 102.15 358.62 307.98 425.20 535.45 138.65 182.94 638.89 847.27 715.03 666.95 293.08 204.99 174.24 230.55 164.23 185.84 52 ER8a ExonRegion 0 206.62 90.37 481.80 153.41 92.15 182.23 87.71 406.40 324.37 461.63 651.39 201.05 256.19 765.98 933.48 849.29 736.31 313.31 239.50 158.38 255.91 215.51 211.44 53 ER8b ExonRegion 0 279.38 103.31 489.90 144.19 64.22 208.69 85.00 397.20 326.81 469.54 640.95 174.04 257.95 753.92 967.28 962.97 744.68 316.70 212.15 171.06 272.82 198.35 249.61 54 ER8c ExonRegion 0 301.01 102.20 400.69 133.17 139.33 183.26 112.82 289.02 242.72 359.17 467.71 179.06 170.69 749.67 950.19 786.71 535.13 304.93 187.60 181.57 244.70 160.95 194.54 55 E8_Db KnownBoundary 0 140.62 39.34 153.37 64.53 110.95 83.36 62.71 141.87 97.54 149.94 192.63 53.42 75.97 169.64 200.01 253.10 220.38 145.54 82.17 82.71 80.68 71.77 60.69 56 E8b_E8c KnownJunction 0 0.00 0.00 178.82 51.21 0.00 0.00 0.00 128.03 113.11 175.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 169.30 0.00 0.00 0.00 0.00 0.00 57 E8_Ac KnownBoundary 0 179.74 73.28 100.03 23.17 58.32 55.14 71.59 107.16 92.50 130.23 163.78 26.26 54.54 126.26 211.63 246.77 200.93 111.47 29.18 91.34 81.67 64.48 91.68 58 ER8d ExonRegion 0 295.47 112.25 280.86 88.86 214.06 140.84 126.57 242.67 198.61 313.33 418.28 93.52 150.08 620.41 856.45 584.32 510.32 281.60 114.04 188.51 207.59 146.68 172.09 59 ER8e ExonRegion 0 203.79 108.11 201.66 59.58 145.64 136.91 92.30 163.43 148.17 236.26 311.23 98.88 140.11 689.76 945.91 557.54 419.10 177.65 123.55 152.47 176.14 131.41 173.31 60 E8_Dc KnownBoundary 0 65.05 35.78 77.88 47.95 37.95 64.22 21.64 92.91 77.81 99.77 98.92 16.66 45.13 196.48 270.47 192.51 142.87 89.00 45.55 51.77 44.23 56.27 52.41 61 E8c_E8d KnownJunction 0 0.00 0.00 52.75 15.12 0.00 0.00 0.00 7.02 35.99 52.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 0.00 0.00 0.00 0.00 0.00 62 E8_Ad KnownBoundary 0 86.98 42.16 110.79 24.97 58.74 50.26 28.35 31.46 51.76 97.78 53.59 13.20 33.44 158.69 230.05 212.68 139.97 35.86 54.03 26.40 54.86 48.37 62.74 63 ER8f ExonRegion 0 123.82 72.87 161.95 44.98 93.65 121.34 42.59 92.47 113.42 173.37 205.53 70.71 108.65 583.33 755.78 449.29 329.54 85.00 137.50 99.65 113.49 122.93 152.22 64 ER8g ExonRegion 0 261.20 106.78 255.19 77.49 143.94 158.86 78.38 200.08 166.87 270.77 399.34 97.39 104.82 775.37 970.24 643.63 498.12 153.05 180.22 152.91 224.41 187.39 170.89 65 E8_Dd KnownBoundary 0 458.08 128.46 294.96 108.78 184.30 180.58 163.49 304.81 215.77 356.00 335.72 138.35 156.97 698.34 931.83 599.76 445.16 203.04 181.65 206.64 208.50 181.68 149.04 66 ER8h ExonRegion 0 541.84 452.94 354.35 165.70 238.96 157.84 160.51 331.96 249.14 341.33 370.04 137.70 135.06 567.94 867.49 574.73 419.80 184.24 164.73 164.44 181.71 207.80 187.81