Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CBX2 Gene 0 21.46 84.93 202.16 92.29 81.92 82.47 118.58 155.15 57.42 301.25 62.73 4.47 2.14 17.18 6.85 9.17 10.08 178.63 214.28 148.39 5.27 3.79 3.48 2 269399 Transcript 0 3.10 13.16 24.24 17.18 7.63 11.25 21.39 20.75 10.51 34.30 7.42 0.96 0.00 2.38 0.00 1.62 2.07 27.60 29.57 44.23 0.00 0.44 0.61 3 310942 Transcript 0 18.63 69.71 189.07 82.05 77.78 103.17 136.71 160.70 63.93 350.10 79.50 11.57 4.51 16.07 4.12 11.26 14.79 193.36 200.40 154.72 4.39 2.29 2.12 4 ER1a ExonRegion 0 0.00 12.27 43.38 10.01 15.70 19.48 30.78 23.05 10.65 64.46 16.60 0.00 0.00 3.69 0.92 2.66 3.82 67.93 92.07 34.94 0.87 0.55 0.00 5 E1a_E2a KnownJunction 0 0.00 5.79 51.59 9.42 25.89 13.69 16.12 28.75 18.11 99.95 27.06 0.00 0.00 2.47 0.00 0.00 4.77 73.87 63.72 42.25 0.00 3.12 0.00 6 ER2a ExonRegion 0 0.00 8.00 74.02 15.80 17.03 12.75 9.78 64.46 24.67 170.78 69.06 0.00 0.00 9.97 2.90 4.12 10.43 72.65 98.75 87.38 3.01 2.94 0.80 7 E2a_E3a KnownJunction 0 0.00 15.19 107.39 32.00 3.65 15.79 13.73 107.61 35.73 234.99 103.45 0.00 0.00 14.13 11.25 11.79 21.97 102.35 228.90 138.70 5.56 2.51 3.59 8 ER3a ExonRegion 0 1.25 16.55 107.89 38.55 13.01 11.23 20.52 99.26 41.02 243.16 92.90 0.00 5.40 22.52 13.50 20.22 18.30 147.12 220.32 160.09 4.57 0.32 3.25 9 E3a_E4a KnownJunction 0 3.19 18.15 134.26 49.58 18.85 24.19 36.26 92.46 62.12 266.01 55.91 0.00 19.64 26.08 13.72 24.78 15.90 223.56 254.97 166.76 2.72 0.00 4.10 10 E3a_E5a NovelJunction 0 0.00 0.00 13.19 4.13 0.00 0.00 1.90 6.65 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 17.79 0.00 0.00 0.00 0.00 11 I3 Intron 0 2.64 15.47 23.27 15.69 12.17 10.45 24.45 17.11 8.76 27.78 4.60 0.86 0.38 0.86 0.50 0.77 0.70 19.17 34.29 34.53 0.73 0.20 0.48 12 I3_AR1 ActiveIntronRegion 0 3.12 7.07 17.36 9.89 5.83 7.74 18.82 16.51 5.00 27.63 4.21 0.00 1.22 2.01 1.34 0.49 1.08 11.16 31.16 30.23 1.08 0.68 0.00 13 I3_SR1 SilentIntronRegion 0 2.59 19.05 25.42 19.56 12.59 12.89 27.89 18.58 9.30 28.52 4.63 1.15 0.43 0.45 0.34 0.58 0.53 20.34 37.32 38.44 0.45 0.00 0.57 14 I3_AR2 ActiveIntronRegion 0 2.20 12.83 17.70 13.59 11.85 9.15 24.07 15.58 6.48 26.12 4.70 0.65 0.00 1.36 0.70 0.00 1.39 17.91 30.36 28.11 1.72 0.48 0.67 15 I3_AR3 ActiveIntronRegion 0 2.12 18.56 25.89 7.50 12.04 9.17 24.00 10.37 2.93 11.47 11.11 0.00 0.00 2.23 0.00 0.00 0.00 22.40 12.74 19.68 0.00 0.00 0.00 16 I3_SR2 SilentIntronRegion 0 2.98 15.60 29.31 12.22 17.03 7.29 19.78 15.45 13.60 28.39 4.58 1.05 0.00 0.38 0.00 2.61 0.00 24.45 33.80 35.46 0.00 0.00 0.43 17 ER4a ExonRegion 0 3.63 43.74 180.21 58.31 31.63 67.07 73.99 128.70 51.54 324.77 77.64 8.21 3.67 17.27 7.47 13.26 10.90 193.25 253.39 164.85 3.33 3.95 0.50 18 E4_Da KnownBoundary 0 0.00 15.79 40.98 20.94 0.00 2.78 31.40 10.56 8.94 27.51 2.00 0.00 0.00 0.00 0.00 3.33 0.00 24.95 32.10 28.89 0.00 0.00 0.00 19 E4a_E5a KnownJunction 0 10.59 35.52 133.79 52.37 54.24 106.02 129.62 134.07 59.32 339.37 85.39 17.86 6.49 11.77 0.00 11.96 17.95 174.77 147.67 137.87 2.29 0.00 0.00 20 ER4b ExonRegion 0 3.10 13.16 24.24 17.18 7.63 11.25 21.39 20.75 10.51 34.30 7.42 0.96 0.00 2.38 0.00 1.62 2.07 27.60 29.57 44.23 0.00 0.44 0.61 21 E4_Db NovelBoundary 0 6.45 79.39 56.30 23.71 19.02 5.11 36.30 37.54 13.92 49.99 19.06 0.00 0.00 2.94 0.00 4.27 8.88 33.00 47.91 42.76 0.00 0.00 0.00 22 I4 Intron 0 7.05 38.07 74.15 55.76 32.27 24.65 45.78 51.03 20.51 64.39 10.32 0.82 1.20 1.71 0.65 1.54 1.71 36.66 59.82 65.50 0.76 0.24 1.01 23 I4_SR1 SilentIntronRegion 0 7.07 38.16 74.31 55.88 32.34 24.70 45.88 51.15 20.55 64.54 10.35 0.82 1.21 1.71 0.65 1.54 1.71 36.74 59.96 65.64 0.76 0.24 1.01 24 E5_Aa NovelBoundary 0 10.22 70.84 71.58 51.34 40.66 32.31 96.67 45.72 13.43 45.99 14.32 0.00 0.00 0.00 0.00 0.00 4.68 23.67 38.59 55.48 0.00 0.00 0.00 25 ER5a ExonRegion 0 26.67 103.90 244.35 111.73 101.31 100.32 143.80 187.33 68.54 360.82 73.61 5.29 2.53 20.37 8.24 10.55 11.62 211.95 253.13 171.58 6.49 4.59 4.24 26 IG50_AR1 ActiveIntergenicRegion 0 26.59 80.86 65.45 50.91 97.73 54.50 88.07 75.15 25.68 123.32 22.85 6.82 1.23 7.42 0.88 2.98 2.84 15.39 43.89 37.10 1.26 0.60 0.42 27 IG50_SR1 SilentIntergenicRegion 0 13.23 78.25 47.76 43.02 69.87 16.67 46.91 62.62 30.37 87.48 12.08 7.97 0.00 3.80 1.19 1.15 0.00 3.40 16.87 30.27 0.00 0.71 0.00 28 IG50_AR2 ActiveIntergenicRegion 0 16.75 90.99 78.15 57.94 120.27 25.68 56.05 78.71 26.52 108.41 12.73 8.46 1.16 1.95 1.99 2.07 1.48 8.91 23.93 30.24 0.33 1.15 0.00