Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC120024.1 Gene 0 7.45 5.79 24.68 9.97 12.37 14.28 10.12 35.36 39.86 42.85 16.15 3.22 1.51 15.16 17.20 16.59 13.03 19.30 19.26 19.90 36.67 17.86 12.43 2 323854 Transcript 0 2.11 2.16 14.66 4.98 6.13 3.05 5.18 14.36 15.08 21.94 10.62 3.17 0.77 13.38 11.55 10.13 8.06 12.33 11.87 13.92 24.72 11.66 7.53 3 309093 Transcript 0 0.00 0.77 3.74 4.07 4.40 1.60 0.74 6.17 12.55 12.21 6.34 1.01 0.73 0.62 8.47 11.03 5.86 7.09 6.17 5.97 2.70 6.94 4.31 4 397538 Transcript 0 2.39 2.95 0.00 1.41 9.69 9.18 2.97 2.79 9.79 0.00 1.44 1.38 0.00 1.55 3.43 0.00 2.55 0.00 1.23 7.33 4.07 3.16 3.40 5 IG13_SR1 SilentIntergenicRegion 0 3.73 7.02 11.02 6.13 12.58 11.74 14.65 24.72 21.47 25.61 1.49 8.70 6.64 2.95 4.55 6.96 8.94 3.92 15.36 7.08 2.51 3.22 8.50 6 IG13_AR2 ActiveIntergenicRegion 0 3.74 2.66 17.05 2.94 5.31 3.68 3.90 14.75 16.32 14.20 0.84 2.59 1.34 2.50 3.27 3.44 4.59 5.44 8.10 5.75 3.00 2.12 1.91 7 ER1a ExonRegion 0 29.44 16.18 6.49 3.68 27.68 40.43 33.83 16.41 11.37 23.69 8.11 0.00 0.14 16.07 19.92 36.02 19.95 14.75 17.78 16.07 24.44 14.12 19.11 8 E1_Da NovelBoundary 0 0.00 5.72 23.09 1.76 0.00 8.01 6.18 21.65 14.03 34.14 0.00 0.00 0.00 2.47 0.00 0.00 4.77 22.97 0.00 14.89 0.00 6.25 4.10 9 E1a_E2a KnownJunction 0 11.04 5.79 8.69 7.46 7.64 0.00 5.08 21.77 19.94 39.49 5.11 0.00 0.00 4.59 0.00 0.00 0.00 24.13 8.94 0.00 3.09 8.88 12.29 10 I1 Intron 0 2.16 7.80 16.34 6.75 5.13 16.41 5.25 17.45 17.64 25.34 2.22 0.00 0.99 3.85 5.65 3.80 4.22 16.44 12.21 17.68 9.85 4.53 6.76 11 I1_AR1 ActiveIntronRegion 0 2.18 7.84 16.42 6.78 5.16 16.49 5.27 17.54 17.73 25.47 2.23 0.00 0.99 3.87 5.68 3.82 4.24 16.52 12.28 17.77 9.90 4.55 6.79 12 E2_Aa NovelBoundary 0 16.37 10.00 21.23 30.07 7.30 15.50 8.48 36.72 38.57 47.44 6.84 5.85 0.00 4.89 13.35 4.36 8.23 33.62 18.07 31.32 32.87 2.51 3.59 13 ER2a ExonRegion 0 5.11 7.57 39.54 19.65 8.40 9.62 9.05 53.01 54.23 70.49 26.00 4.33 3.38 20.60 25.57 25.06 22.70 36.94 38.80 36.84 39.82 21.08 13.28 14 E2_Da NovelBoundary 0 7.33 20.19 50.03 22.01 41.26 45.49 18.50 31.34 45.40 65.60 2.68 6.30 0.00 2.47 20.15 16.32 0.00 46.14 35.01 44.93 18.53 3.06 11.78 15 E2a_E3a KnownJunction 0 0.00 0.00 3.67 1.90 0.00 0.00 0.00 5.87 8.94 12.20 9.42 0.00 0.00 0.00 16.56 19.31 3.55 7.71 7.72 6.01 0.00 11.02 7.77 16 E2a_E4a KnownJunction 1 3.78 0.00 27.47 2.03 3.48 18.17 3.62 36.51 23.52 17.70 5.11 0.00 0.00 12.36 28.31 64.34 0.00 28.40 27.39 11.25 31.94 24.37 32.69 17 E2a_E5a NovelJunction 0 0.00 0.00 1.83 5.49 0.00 4.49 0.00 10.47 18.06 4.24 0.00 0.00 0.00 0.00 10.75 0.00 0.00 2.57 13.27 2.56 0.00 6.25 6.66 18 I2 Intron 0 10.03 24.68 22.45 24.17 28.60 25.35 18.72 30.93 34.07 37.85 4.43 5.64 7.77 7.79 7.75 7.67 4.69 19.74 25.66 20.90 12.93 9.16 14.23 19 I2_AR1 ActiveIntronRegion 0 0.82 25.93 14.82 14.91 32.05 51.72 15.86 26.87 21.33 25.75 2.24 0.00 1.49 7.16 12.00 3.44 5.10 17.05 20.92 15.62 3.41 8.05 6.81 20 I2_SR1 SilentIntronRegion 0 10.40 25.60 7.85 11.86 23.02 38.87 13.83 15.06 18.66 13.13 5.93 7.75 5.93 10.39 7.66 10.96 3.04 8.20 25.44 30.07 9.48 9.60 7.22 21 I2_AR2 ActiveIntronRegion 0 27.53 79.36 59.73 73.24 60.31 58.57 42.63 78.95 77.99 79.02 8.96 13.19 18.16 19.07 16.31 14.55 9.35 48.87 46.36 48.23 15.60 12.88 20.81 22 I2_SR3 SilentIntronRegion 0 20.38 15.34 15.42 22.05 38.43 35.82 40.57 41.89 42.41 49.17 4.69 5.71 11.30 6.07 9.73 15.47 6.93 22.85 56.50 21.64 17.49 17.52 33.10 23 I2_AR4 ActiveIntronRegion 0 6.85 10.46 28.13 22.71 23.43 12.43 14.90 33.49 39.33 55.44 3.41 6.15 8.67 7.49 5.81 7.25 6.50 21.27 24.13 23.63 21.71 10.46 19.70 24 I2_SR4 SilentIntronRegion 0 2.15 5.45 7.31 4.67 18.58 6.35 7.23 9.61 15.72 15.07 3.27 2.97 3.13 2.25 4.08 3.08 1.34 4.94 12.86 5.36 8.71 6.61 8.46 25 I2_AR5 ActiveIntronRegion 0 2.67 1.54 4.15 3.08 4.05 2.78 4.68 2.60 9.28 13.81 0.49 0.00 0.00 0.75 1.77 3.00 1.67 11.36 11.26 2.15 10.57 3.68 8.90 26 E3_Aa NovelBoundary 0 6.52 0.00 17.27 1.53 7.47 17.43 2.25 9.28 25.32 25.41 0.00 0.00 0.00 4.94 4.45 3.93 8.60 20.27 7.72 5.94 16.87 11.27 19.21 27 ER3a ExonRegion 0 0.00 0.00 8.80 5.52 4.96 3.97 2.94 13.53 22.22 23.29 6.51 4.04 2.92 2.48 8.40 13.12 7.63 14.10 9.04 8.68 10.79 6.31 9.46 28 E3_Da NovelBoundary 0 3.48 2.57 14.10 8.06 7.39 2.44 3.93 7.72 26.76 26.14 0.00 0.00 0.00 0.00 0.00 7.60 0.00 14.96 13.84 2.81 8.53 21.00 11.61 29 E3a_E4a KnownJunction 0 0.00 3.09 2.48 7.49 12.65 2.44 0.00 3.53 17.19 11.20 9.42 0.00 0.00 0.00 8.90 11.71 12.25 6.55 7.91 9.20 0.00 10.41 0.00 30 I3 Intron 0 3.11 1.28 10.73 4.69 4.49 6.54 6.39 9.20 10.82 15.07 0.41 0.00 1.79 2.49 1.29 1.25 0.00 8.67 9.36 5.36 13.41 6.12 5.55 31 I3_AR1 ActiveIntronRegion 0 3.90 1.65 12.18 5.38 5.51 8.19 8.21 10.00 12.87 16.67 0.21 0.00 2.31 3.20 1.43 1.23 0.00 10.07 10.95 6.28 13.88 6.58 6.63 32 I3_SR1 SilentIntronRegion 0 0.37 0.00 5.96 2.41 1.00 0.83 0.03 6.78 3.78 9.96 1.14 0.00 0.00 0.00 0.85 1.40 0.00 3.91 4.00 2.25 12.49 4.78 1.84 33 E4_Aa NovelBoundary 0 0.00 0.00 18.95 7.19 15.37 8.18 4.50 18.94 19.91 29.49 2.68 0.00 0.00 2.47 4.45 4.36 0.00 5.93 13.27 5.82 28.85 5.51 7.26 34 ER4a ExonRegion 1 1.80 1.42 25.76 7.53 9.77 18.20 4.00 50.95 39.55 34.61 18.17 6.06 0.00 12.83 17.77 37.52 4.21 22.96 27.23 15.00 30.36 25.16 31.64 35 E4_Da NovelBoundary 0 6.67 0.00 4.11 5.46 0.00 13.40 2.16 8.95 22.02 21.73 0.00 5.25 0.00 0.00 0.00 12.30 0.00 9.33 18.54 9.08 9.82 13.59 17.84 36 E4a_E5a KnownJunction 0 2.82 6.05 13.87 10.19 6.71 15.62 6.18 50.07 39.24 33.82 25.59 6.30 0.00 14.42 25.84 21.02 13.65 10.40 27.11 13.23 40.28 23.76 22.96 37 I4 Intron 0 3.63 2.64 10.44 10.66 4.59 4.58 3.10 9.78 24.69 25.41 1.71 0.74 2.01 2.84 4.76 3.09 1.54 10.36 12.59 9.29 10.88 5.74 9.62 38 I4_SR1 SilentIntronRegion 0 3.64 2.65 10.46 10.69 4.60 4.59 3.10 9.80 24.74 25.47 1.71 0.74 2.01 2.84 4.77 3.10 1.55 10.38 12.61 9.31 10.90 5.75 9.64 39 E5_Aa NovelBoundary 0 7.56 0.00 5.68 5.99 11.80 0.00 6.32 22.88 14.58 22.21 4.11 0.00 0.00 2.06 0.00 3.76 8.79 6.22 4.24 5.75 41.27 3.12 0.00 40 ER5a ExonRegion 0 13.32 5.94 40.99 13.30 28.20 29.15 13.72 61.40 64.11 71.49 30.94 3.75 4.73 17.62 34.87 21.02 19.75 15.17 24.67 23.35 66.19 29.87 25.39 41 E5_Da NovelBoundary 0 0.00 0.00 8.43 3.70 0.00 11.41 3.97 13.02 17.48 25.38 2.68 0.00 0.00 4.94 9.27 7.86 3.83 12.93 21.46 6.26 15.01 5.33 11.52 42 E5a_E6a KnownJunction 0 10.22 12.89 68.86 29.90 17.32 26.52 32.86 84.12 69.39 79.38 21.74 6.30 6.82 18.78 19.66 7.95 20.66 10.78 38.21 25.82 84.51 28.29 28.60 43 I5 Intron 0 0.82 1.84 6.60 4.33 3.28 2.96 2.39 8.98 15.21 15.23 0.50 0.92 1.18 2.24 3.59 2.31 1.28 7.53 5.76 3.85 7.40 5.52 4.17 44 I5_AR1 ActiveIntronRegion 0 0.96 1.13 12.03 5.49 2.44 2.56 3.13 9.35 20.85 24.72 1.07 1.99 0.00 2.52 3.49 2.11 2.62 14.58 3.31 4.42 9.87 4.06 4.24 45 I5_SR1 SilentIntronRegion 0 1.01 0.71 12.27 5.15 2.53 1.91 0.70 12.49 21.94 19.62 0.68 0.00 1.34 3.76 3.00 2.53 2.47 11.79 11.35 7.79 10.64 7.23 4.91 46 I5_AR2 ActiveIntronRegion 0 0.00 0.19 0.41 4.00 7.56 1.34 3.15 5.51 5.51 9.54 0.74 0.00 3.13 0.72 6.36 3.82 0.00 0.00 0.51 0.00 4.30 10.02 5.55 47 E6_Aa NovelBoundary 0 6.59 0.00 6.71 10.55 20.29 5.28 22.35 22.71 26.71 23.37 0.00 0.00 0.00 2.30 5.19 3.50 0.00 19.90 21.46 9.14 4.70 2.69 13.66 48 ER6a ExonRegion 0 12.85 10.73 56.76 26.67 23.11 27.56 20.20 111.10 99.11 82.11 33.42 3.26 0.82 25.59 24.93 19.73 23.01 19.31 25.21 30.40 67.90 28.78 15.02 49 E6a_E7a KnownJunction 0 34.75 21.58 75.25 34.59 35.99 34.64 17.14 110.45 111.25 95.44 38.11 0.00 0.00 32.14 27.81 28.37 23.09 23.63 27.48 29.34 38.86 26.21 3.59 50 ER7a ExonRegion 0 19.89 16.02 44.46 16.26 13.90 31.57 15.88 73.05 89.79 86.73 23.22 2.05 1.53 22.45 20.71 22.10 15.51 40.44 26.30 27.41 69.31 33.51 13.61 51 E7a_E8a KnownJunction 0 20.37 17.50 51.12 15.42 12.99 35.04 23.85 74.75 82.84 78.46 37.54 6.30 0.00 21.31 30.16 12.73 21.32 30.88 21.74 20.01 46.33 15.80 28.26 52 E7a_E11a KnownJunction 0 0.00 2.57 0.00 2.06 3.74 0.00 0.00 3.98 13.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E8_Aa NovelBoundary 0 7.11 0.00 13.16 5.19 0.00 0.00 4.20 6.37 23.67 14.32 5.11 5.85 0.00 0.00 4.45 3.85 0.00 7.21 0.00 3.20 2.72 0.00 3.50 54 ER8a ExonRegion 0 15.86 9.39 43.00 15.68 21.86 20.76 19.64 54.62 80.24 68.74 20.91 4.33 0.00 21.41 17.41 14.13 16.45 26.78 26.27 24.35 63.06 24.36 14.59 55 E8a_E9a KnownJunction 0 10.59 15.19 34.83 23.01 41.60 22.88 16.34 45.92 98.58 73.79 13.00 0.00 0.00 11.83 10.75 15.89 13.37 27.07 29.65 23.33 61.28 27.80 21.17 56 ER9a ExonRegion 0 6.49 7.48 23.16 9.45 20.77 24.83 14.00 26.92 58.97 43.78 13.07 1.61 0.00 20.01 21.34 18.99 15.33 20.58 26.89 24.05 51.69 26.06 13.69 57 E9_Da KnownBoundary 0 10.37 3.16 20.73 9.69 3.14 2.90 4.24 19.80 25.61 23.40 9.00 6.30 0.00 9.77 20.03 11.45 12.53 10.74 18.92 12.21 22.67 25.17 12.12 58 E9a_E11a NovelJunction 0 31.71 13.09 23.48 24.01 40.15 29.36 15.77 67.07 79.92 48.84 7.32 0.00 0.00 2.41 0.00 0.00 0.00 12.81 27.20 12.21 44.05 8.51 4.35 59 ER9b ExonRegion 0 2.11 2.16 14.66 4.98 6.13 3.05 5.18 14.36 15.08 21.94 10.62 3.17 0.77 13.38 11.55 10.13 8.06 12.33 11.87 13.92 24.72 11.66 7.53 60 E9_Db NovelBoundary 0 3.26 0.00 6.68 6.06 3.74 2.90 2.16 14.83 16.09 13.51 2.53 5.55 0.00 2.41 13.35 3.67 0.00 2.49 23.81 5.24 15.07 8.27 6.40 61 ER10a ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.73 1.85 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 I10 Intron 0 1.37 0.89 3.45 2.35 3.29 2.31 1.35 6.46 13.21 9.75 0.35 0.55 0.24 0.75 0.26 0.67 0.35 2.99 5.26 3.13 11.18 2.85 4.28 63 I10_SR1 SilentIntronRegion 0 1.37 0.89 3.45 2.35 3.29 2.31 1.35 6.46 13.21 9.75 0.35 0.55 0.24 0.75 0.26 0.67 0.35 2.99 5.26 3.13 11.18 2.85 4.28 64 E11_Aa NovelBoundary 0 12.89 3.35 1.39 12.52 19.35 13.74 12.19 9.98 9.26 7.12 5.16 6.30 6.01 0.00 0.00 0.00 0.00 4.64 18.45 3.26 14.46 2.45 8.45 65 ER11a ExonRegion 0 4.78 3.33 0.00 0.76 15.65 18.37 5.94 1.60 6.21 0.00 2.87 2.76 0.00 3.10 6.86 0.00 5.10 0.00 2.46 14.67 8.15 6.31 6.81 66 IG14_AR1 ActiveIntergenicRegion 0 21.46 10.83 31.79 27.45 38.91 33.43 9.08 76.23 93.67 62.65 0.79 0.73 0.40 2.21 0.84 0.00 0.34 10.63 12.38 14.38 26.17 8.53 10.83