Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HEXDC Gene 0 67.02 53.09 174.97 123.40 58.19 94.03 25.57 100.78 112.29 146.27 28.98 13.45 17.09 103.86 126.26 70.09 55.56 83.52 126.61 71.91 44.82 49.66 75.99 2 337014 Transcript 0 49.05 49.30 81.58 59.54 54.41 102.11 26.81 63.56 63.39 90.74 15.11 4.40 8.57 63.66 70.15 67.31 40.24 54.96 102.37 50.04 31.00 20.72 50.52 3 327949 Transcript 0 137.65 47.23 260.69 239.23 51.70 154.12 22.48 134.19 171.09 170.20 33.69 6.30 25.49 98.48 161.82 86.73 60.12 72.21 125.93 71.52 39.97 53.27 88.44 4 ER1a ExonRegion 0 5.18 9.17 13.81 6.94 7.43 29.23 5.99 9.45 12.38 25.79 7.59 1.13 0.54 20.96 20.17 13.21 14.59 17.27 27.47 16.03 14.16 8.89 18.13 5 E1a_E2a KnownJunction 0 64.01 75.18 92.46 73.48 73.43 184.72 37.71 80.79 77.02 114.51 17.11 6.30 0.00 79.05 96.55 73.74 46.94 70.55 129.60 55.16 39.48 16.59 65.05 6 I1 Intron 0 13.23 28.60 11.80 20.00 14.08 6.88 8.90 13.82 10.74 7.48 1.31 2.95 8.12 0.90 3.77 3.41 3.10 6.80 9.13 10.75 0.80 2.82 6.58 7 I1_SR1 SilentIntronRegion 0 10.20 46.22 7.23 26.54 13.90 5.35 4.95 14.48 10.21 5.90 0.63 5.16 11.17 0.77 2.84 3.67 4.73 1.86 4.53 13.30 0.00 3.70 5.81 8 I1_AR2 ActiveIntronRegion 0 20.35 37.27 17.98 25.51 23.74 9.39 16.40 18.49 13.70 12.58 1.10 4.51 12.77 0.78 4.47 1.98 3.48 5.48 11.94 13.98 0.00 3.61 9.65 9 E2_Aa NovelBoundary 0 17.56 41.11 17.21 36.43 33.02 7.50 21.73 23.54 23.03 9.11 5.32 0.00 0.00 4.71 4.45 3.42 8.51 8.54 27.67 16.23 0.00 14.94 11.95 10 ER2a ExonRegion 0 87.91 82.58 124.06 106.50 109.25 160.08 51.86 117.53 111.61 148.20 21.97 3.27 23.11 115.04 98.71 141.72 73.34 102.84 204.80 86.77 45.26 44.97 103.50 11 E2_Ab KnownBoundary 1 153.36 108.86 175.33 181.20 163.67 159.06 77.51 163.68 188.51 214.95 26.48 0.00 53.08 107.66 56.12 181.75 107.06 142.72 291.30 114.86 55.85 74.89 142.04 12 ER2b ExonRegion 0 77.28 80.24 209.04 179.41 136.72 130.41 38.49 174.46 150.34 231.38 50.95 23.81 28.39 127.30 89.63 105.45 87.23 141.31 246.73 103.24 59.97 69.51 109.41 13 E2_Da NovelBoundary 0 51.56 33.42 58.90 99.42 23.26 18.57 31.49 51.38 48.61 41.88 18.11 12.60 0.00 19.19 15.08 19.82 4.77 23.42 34.35 57.85 13.84 10.35 8.28 14 E2a_E3a KnownJunction 0 56.53 51.77 286.57 163.65 78.86 118.68 18.68 198.43 147.22 254.06 50.96 49.37 68.99 169.64 174.18 90.83 73.87 161.71 257.98 90.38 50.41 62.76 108.33 15 E2a_E4a NovelJunction 0 3.78 3.16 22.29 17.05 4.33 0.00 1.90 5.83 12.79 35.35 2.16 0.00 6.49 11.95 4.45 4.19 4.49 7.92 18.64 9.27 15.51 2.57 3.76 16 I2 Intron 0 22.03 34.85 24.85 35.65 30.23 20.71 12.44 16.04 16.81 15.10 2.29 2.79 5.68 6.83 18.33 14.45 7.14 19.63 34.29 26.12 7.45 6.73 8.36 17 I2_AR1 ActiveIntronRegion 0 29.44 33.67 36.28 60.53 36.04 36.44 19.00 24.46 24.37 22.26 5.11 3.94 6.82 11.07 22.57 19.03 11.66 17.04 28.83 34.73 9.23 7.82 12.97 18 I2_SR1 SilentIntronRegion 0 28.62 46.67 24.48 36.64 38.20 23.70 14.64 15.28 17.54 15.05 2.09 2.10 6.39 6.40 20.39 15.57 7.06 22.12 40.22 26.71 6.77 7.51 7.44 19 I2_AR2 ActiveIntronRegion 0 3.01 12.14 17.17 16.51 18.32 13.61 3.95 17.24 12.40 12.58 1.85 0.43 7.20 8.97 13.40 12.14 0.00 20.07 39.21 16.00 5.03 4.43 7.32 20 I2_SR2 SilentIntronRegion 0 6.65 13.02 21.05 23.64 11.53 7.05 5.55 13.19 12.00 11.94 1.35 4.10 3.28 5.26 12.40 10.04 6.15 15.52 23.37 22.05 8.46 4.85 8.21 21 E3_Aa NovelBoundary 0 3.48 17.43 28.71 26.64 23.01 2.90 8.48 9.78 14.87 7.41 2.47 0.00 0.00 14.89 19.16 7.26 12.81 27.65 25.69 20.39 8.22 5.63 0.00 22 ER3a ExonRegion 0 27.05 36.03 267.65 197.40 60.72 108.56 22.18 187.41 173.92 256.48 36.44 34.91 36.88 168.85 147.94 151.85 82.07 158.69 279.27 121.51 62.59 86.50 136.79 23 E3a_E4a KnownJunction 0 23.34 35.59 275.30 163.52 56.37 127.31 19.83 186.23 187.38 302.68 48.85 68.72 25.32 135.85 138.45 52.55 85.18 111.47 97.13 81.94 49.67 46.90 114.90 24 ER4a ExonRegion 0 53.39 54.88 300.51 225.26 105.90 184.71 47.09 185.30 205.06 245.75 43.84 39.06 26.01 190.50 134.97 110.27 105.37 129.53 214.22 111.24 65.66 83.39 108.72 25 E4a_E5a KnownJunction 1 65.20 100.38 329.53 207.03 124.28 189.95 55.16 172.18 217.62 229.21 20.06 43.21 59.25 187.36 203.35 129.37 118.75 135.14 210.55 110.00 64.93 68.52 157.84 26 E4a_E6a NovelJunction 0 0.00 8.95 7.78 0.00 8.66 8.35 0.00 3.86 4.28 5.32 0.00 0.00 0.00 4.83 0.00 0.00 0.00 6.38 13.08 2.62 0.00 5.57 0.00 27 ER5a ExonRegion 0 58.21 80.20 243.19 165.79 76.36 125.88 29.30 133.80 175.56 190.12 35.76 22.30 27.51 143.38 130.94 96.66 73.24 136.49 194.67 79.34 66.27 68.26 117.00 28 E5a_E6a KnownJunction 0 92.31 79.00 200.35 141.01 86.25 111.41 35.73 106.50 146.41 153.92 25.43 18.91 19.15 124.14 60.57 78.18 81.44 115.95 161.13 80.28 45.65 58.78 70.25 29 ER6a ExonRegion 0 59.18 57.11 200.45 134.27 45.69 109.59 33.18 106.56 129.63 168.68 27.33 10.16 20.16 121.35 136.94 64.34 53.93 110.81 118.20 79.57 47.76 40.66 72.92 30 E6_Da NovelBoundary 0 13.41 2.76 10.70 7.99 3.57 13.00 6.54 8.63 1.10 19.66 2.63 0.00 0.00 9.30 0.00 8.12 4.02 26.74 4.80 9.46 2.78 2.33 14.51 31 E6a_E7a KnownJunction 0 97.42 76.17 218.80 144.70 54.84 70.07 35.64 137.11 109.95 178.71 21.43 12.15 15.10 100.89 162.06 42.72 76.02 138.66 99.49 87.44 47.69 37.66 78.28 32 I6 Intron 0 3.94 1.83 21.58 16.70 4.47 9.89 3.57 17.70 18.56 14.16 2.60 1.88 0.97 11.34 9.80 8.97 6.36 27.74 15.96 17.77 8.06 6.29 19.43 33 I6_SR1 SilentIntronRegion 0 3.95 1.83 21.63 16.74 4.48 9.92 3.58 17.75 18.61 14.20 2.61 1.89 0.98 11.37 9.82 9.00 6.38 27.81 16.00 17.81 8.08 6.31 19.48 34 E7_Aa NovelBoundary 0 7.19 2.70 14.49 35.96 4.33 23.96 2.25 13.92 17.97 21.54 4.79 0.00 0.00 2.47 5.07 0.00 4.77 38.55 12.99 26.78 10.56 8.70 15.02 35 ER7a ExonRegion 0 45.68 57.28 171.01 78.71 43.44 68.51 19.27 78.86 89.91 125.59 27.73 2.35 20.45 106.54 143.85 66.63 59.65 66.70 113.30 81.03 35.47 29.75 55.84 36 E7_Da NovelBoundary 0 30.52 18.29 200.97 144.57 39.98 43.78 21.73 66.42 89.18 136.83 7.53 0.00 6.17 69.75 62.92 53.06 9.16 111.30 93.56 59.70 17.24 36.62 73.92 37 E7a_E8a KnownJunction 0 30.75 59.46 155.70 68.66 27.08 95.06 14.66 55.86 96.50 93.64 8.69 0.00 6.17 59.10 87.03 35.46 24.40 40.38 45.93 39.12 26.32 8.51 30.90 38 I7 Intron 0 26.17 15.96 114.40 80.88 24.49 43.60 10.86 53.89 65.20 91.63 7.58 4.36 5.97 63.81 58.74 37.10 20.41 65.40 69.68 36.42 24.88 21.55 54.80 39 I7_SR1 SilentIntronRegion 0 29.65 16.73 122.76 99.34 32.16 53.08 7.97 59.42 61.37 98.27 7.55 6.70 6.81 63.13 70.25 36.07 22.45 79.68 67.13 44.51 26.46 25.73 59.62 40 I7_AR1 ActiveIntronRegion 0 23.85 15.33 153.41 111.72 25.26 59.67 14.37 67.79 90.16 109.80 8.11 5.60 13.15 74.75 61.21 49.87 30.19 92.16 87.33 37.99 26.66 22.87 64.89 41 I7_AR2 ActiveIntronRegion 0 16.58 12.88 158.28 117.66 18.28 51.04 13.90 82.10 99.43 114.31 13.21 4.33 19.54 93.93 64.31 65.39 33.56 97.31 73.79 61.70 34.52 21.18 92.50 42 I7_AR3 ActiveIntronRegion 0 28.72 19.50 122.39 82.37 24.33 36.26 13.90 61.99 80.31 106.39 9.88 3.35 5.27 68.18 59.50 42.78 19.46 64.90 85.01 39.38 28.09 24.40 58.88 43 I7_AR4 ActiveIntronRegion 0 15.84 6.97 52.20 17.54 9.56 31.44 7.65 12.81 20.42 31.32 1.45 1.15 0.07 46.50 31.91 16.00 11.60 18.42 29.79 9.29 12.35 5.88 26.00 44 E8_Aa NovelBoundary 0 39.04 18.02 125.39 101.85 44.23 108.35 20.98 71.51 66.67 104.41 13.16 5.55 0.00 97.89 58.97 31.70 30.20 64.17 108.52 46.98 44.23 30.25 65.99 45 ER8a ExonRegion 0 39.00 47.46 191.20 111.64 35.13 88.86 19.24 88.41 110.66 128.31 23.66 4.79 9.50 118.03 129.77 48.55 52.19 75.64 95.24 58.94 47.59 46.44 76.05 46 E8_Da NovelBoundary 0 18.15 22.43 33.00 18.85 20.37 10.16 6.27 25.14 9.61 21.95 0.00 0.00 0.00 14.89 15.20 11.88 4.49 38.10 26.17 8.63 10.87 2.57 16.48 47 E8a_E9a KnownJunction 0 51.19 83.60 250.35 181.93 82.26 135.38 37.67 124.41 137.99 105.14 41.75 0.00 14.77 145.15 139.32 63.57 59.56 96.50 156.80 77.53 37.44 51.56 159.37 48 I8 Intron 0 17.87 7.44 27.67 19.75 6.46 13.06 5.49 18.06 15.89 26.28 3.21 1.71 1.75 12.12 15.81 7.73 8.34 34.87 20.66 15.88 8.14 6.75 14.17 49 I8_AR1 ActiveIntronRegion 0 7.78 7.70 23.74 16.45 5.44 5.19 6.14 12.91 7.83 21.02 1.11 1.02 1.11 9.91 18.76 8.06 8.10 32.35 30.06 17.77 3.34 1.38 17.22 50 I8_SR1 SilentIntronRegion 0 19.32 7.55 25.97 17.71 6.33 12.87 5.35 17.73 15.21 24.23 3.35 2.03 1.81 10.67 15.01 7.86 6.97 33.23 17.75 15.77 8.66 7.10 12.61 51 I8_AR2 ActiveIntronRegion 0 19.59 6.98 35.10 27.64 7.43 18.39 5.51 22.08 22.50 35.35 4.04 1.22 1.98 17.73 16.51 7.27 12.37 40.86 23.66 15.28 9.36 8.98 16.95 52 E9_Aa NovelBoundary 0 19.63 5.72 45.74 27.90 4.16 8.12 9.67 18.94 25.46 31.35 2.53 0.00 0.00 17.54 4.45 7.35 13.74 26.24 9.22 15.40 14.52 2.88 32.01 53 ER9a ExonRegion 0 37.94 48.44 156.20 91.05 45.55 91.91 24.87 76.86 102.07 96.63 31.30 6.57 8.81 111.61 121.68 56.40 33.49 58.35 141.23 60.50 54.80 60.50 77.63 54 E9_Da NovelBoundary 0 120.76 28.35 81.72 76.38 24.19 100.79 14.57 33.35 58.27 49.45 17.00 0.00 0.00 58.27 72.81 43.32 25.99 57.29 70.12 73.63 14.95 35.39 98.85 55 E9a_E10a KnownJunction 0 14.74 69.26 74.39 30.57 24.02 117.26 19.17 56.31 50.90 75.94 22.80 11.85 13.64 43.56 38.20 35.38 13.37 11.65 54.50 20.01 28.73 26.15 24.67 56 I9 Intron 0 117.20 45.59 146.84 126.42 65.63 91.63 24.68 83.24 95.48 122.90 19.29 11.37 23.50 87.56 102.38 58.01 40.54 66.92 79.39 58.86 36.69 49.36 77.39 57 I9_AR1 ActiveIntronRegion 0 117.38 45.66 147.07 126.62 65.73 91.77 24.72 83.37 95.63 123.09 19.31 11.39 23.54 87.70 102.54 58.09 40.61 67.03 79.51 58.95 36.75 49.44 77.51 58 E10_Aa NovelBoundary 0 100.31 47.29 62.24 100.52 55.35 116.18 19.78 53.72 42.74 96.00 9.63 18.46 13.31 75.28 71.95 29.91 28.89 21.10 31.25 30.36 22.61 16.41 49.60 59 ER10a ExonRegion 0 189.74 115.97 307.43 222.00 175.38 223.84 68.09 160.09 159.38 205.27 51.99 22.41 42.98 164.65 190.97 115.09 105.00 77.86 220.72 116.13 61.48 90.65 122.93 60 E10_Da KnownBoundary 0 142.91 86.10 176.58 97.72 58.06 81.15 30.47 71.80 73.81 102.77 34.64 0.00 25.65 60.80 32.51 55.80 17.67 75.07 126.50 64.56 33.11 19.90 14.77 61 E10a_E10b KnownJunction 0 137.65 47.23 260.69 239.23 51.70 154.12 22.48 134.19 171.09 170.20 33.69 6.30 25.49 98.48 161.82 86.73 60.12 72.21 125.93 71.52 39.97 53.27 88.44 62 ER10b ExonRegion 0 39.09 30.26 96.00 51.21 27.53 34.41 11.67 46.48 52.56 74.47 13.79 6.88 10.63 39.59 65.18 40.55 26.08 29.15 47.60 42.20 25.10 12.41 15.40 63 E10_Ab KnownBoundary 0 16.37 12.56 102.51 72.82 17.74 45.09 8.39 44.32 48.35 62.40 2.21 12.60 0.00 45.44 72.56 27.77 42.64 39.46 12.42 22.31 14.70 7.72 7.85 64 ER10c ExonRegion 0 146.52 79.29 284.21 236.26 100.25 135.74 31.84 148.70 156.27 211.03 39.29 15.13 24.19 130.73 198.12 95.90 79.22 135.53 163.65 102.49 60.00 81.75 110.37 65 E10b_E11a KnownJunction 1 342.73 101.56 350.31 279.85 111.63 118.23 38.51 189.19 192.42 218.09 52.33 0.00 45.94 118.31 177.89 149.88 88.45 186.62 333.09 89.55 49.24 102.57 166.12 66 E10b_E12a NovelJunction 0 0.00 9.54 22.68 24.57 0.00 10.39 0.00 4.11 2.26 11.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 5.94 3.15 0.00 0.00 67 I10 Intron 0 22.88 13.52 51.12 27.58 20.02 42.20 15.41 45.69 35.71 57.33 18.75 15.18 17.21 29.90 28.43 25.54 37.51 20.63 31.78 22.41 24.42 12.70 27.67 68 I10_AR1 ActiveIntronRegion 0 23.36 13.82 52.23 28.19 20.47 43.14 15.76 46.71 36.50 58.60 19.16 15.51 17.59 30.56 29.06 26.11 38.33 21.08 32.46 22.91 24.96 12.99 28.27 69 E11_Aa NovelBoundary 0 16.97 18.48 129.06 67.32 30.31 38.67 23.36 80.18 73.55 107.47 17.43 0.00 22.56 32.67 46.23 89.04 40.02 46.55 62.12 34.64 11.55 19.96 79.30 70 ER11a ExonRegion 0 124.92 55.16 258.23 202.60 50.45 72.70 22.71 126.58 149.19 185.05 43.21 17.22 24.18 120.35 232.26 104.92 70.09 75.86 149.04 84.14 58.96 71.09 106.11 71 E11_Da NovelBoundary 0 23.34 21.18 111.62 54.70 52.04 69.68 8.26 58.45 62.04 76.91 30.90 30.91 0.00 24.66 41.91 22.99 28.89 46.10 20.99 52.73 27.31 20.15 45.67 72 E11a_E12a KnownJunction 1 177.81 97.75 261.61 244.16 76.23 100.85 28.53 156.70 133.39 183.47 38.27 25.96 14.45 103.24 275.42 104.33 80.22 126.14 122.07 90.19 59.49 66.50 97.23 73 I11 Intron 0 26.47 14.96 42.53 28.38 22.96 22.03 9.74 27.79 17.15 33.94 13.74 5.62 7.78 24.95 24.98 24.05 25.09 19.59 17.96 24.00 15.67 13.28 17.28 74 I11_AR1 ActiveIntronRegion 0 26.72 15.10 42.95 28.66 23.19 22.25 9.83 28.05 17.32 34.27 13.88 5.67 7.85 25.19 25.22 24.28 25.33 19.78 18.14 24.23 15.82 13.41 17.45 75 E12_Aa NovelBoundary 0 61.71 15.85 129.45 90.96 20.71 42.70 23.45 72.50 59.14 111.29 21.16 13.80 0.00 31.08 54.76 21.45 35.53 41.04 16.28 35.73 23.54 3.06 24.93 76 ER12a ExonRegion 0 106.46 62.23 169.13 123.89 59.17 84.66 26.83 103.54 114.52 156.11 31.70 15.42 14.06 95.77 168.20 64.93 52.49 78.12 99.21 78.66 42.30 51.57 71.57