Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MGAT5B Gene 0 9.32 80.81 122.83 51.60 28.07 49.47 34.78 78.96 88.14 122.18 1.14 0.00 0.04 0.07 0.06 0.06 0.21 150.79 160.71 98.49 2.37 16.63 10.46 2 374998 Transcript 0 0.90 4.89 3.14 2.61 1.11 1.29 1.13 1.13 1.79 1.73 0.13 0.00 0.41 0.14 0.00 0.00 0.00 7.66 12.09 3.84 0.47 1.19 0.95 3 374999 Transcript 0 7.12 64.85 156.09 63.38 21.21 40.35 29.58 74.04 97.77 147.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.43 140.44 116.81 0.00 2.23 2.24 4 301618 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 428789 Transcript 0 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.66 0.93 6 428991 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 435904 Transcript 0 0.17 3.27 8.81 2.43 1.17 1.43 5.61 4.00 4.71 5.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.56 10.55 11.60 1.65 2.05 2.39 8 IG8_SR1 SilentIntergenicRegion 0 34.88 75.95 69.05 69.77 218.75 76.40 75.21 112.95 134.00 80.98 10.46 12.75 13.62 6.38 12.30 13.99 11.91 18.45 38.48 35.22 7.61 7.85 13.12 9 IG8_AR2 ActiveIntergenicRegion 0 55.01 97.18 104.10 99.32 134.22 73.03 64.75 145.77 186.45 121.07 22.96 11.92 8.87 8.16 19.58 27.82 14.30 49.93 48.96 54.70 25.55 10.77 22.98 10 IG8_SR2 SilentIntergenicRegion 0 2.62 11.45 8.57 12.04 25.89 27.47 19.02 9.65 14.96 9.08 2.98 1.35 0.00 1.67 2.56 4.65 5.12 0.00 5.94 6.66 2.74 0.00 0.00 11 IG8_AR4 ActiveIntergenicRegion 0 20.05 2.09 20.03 18.29 42.18 18.97 27.42 47.08 54.44 29.16 1.42 10.25 11.85 1.32 1.30 26.67 5.13 10.99 18.44 6.44 1.80 4.22 12.52 12 IG8_SR3 SilentIntergenicRegion 0 7.18 10.51 11.30 10.22 28.28 11.44 10.07 16.94 26.68 15.05 2.24 2.57 2.67 0.75 1.95 2.84 1.14 2.33 6.96 6.46 1.61 0.82 2.51 13 ER1a ExonRegion 0 0.00 1.08 0.64 0.00 0.00 1.54 0.00 0.93 1.82 1.41 0.38 0.00 0.00 0.00 0.00 0.00 0.00 10.60 20.00 5.40 0.70 0.00 0.00 14 E1_Ab KnownBoundary 0 0.00 3.09 3.31 1.83 0.00 14.08 0.00 9.00 15.45 13.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.98 43.67 31.38 3.03 0.00 0.00 15 ER1b ExonRegion 0 0.78 9.59 27.90 5.69 6.11 13.77 8.77 21.91 30.57 45.35 1.01 0.00 0.00 0.00 0.00 0.00 0.42 67.97 73.15 52.54 2.15 6.62 4.25 16 E1a_E2c KnownJunction 0 7.41 35.91 93.05 25.04 36.16 45.09 23.80 78.20 95.83 116.93 2.53 0.00 0.00 0.00 0.00 0.00 0.00 179.49 156.33 98.50 0.00 24.13 6.74 17 ER2a ExonRegion 0 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.66 0.93 18 E2_Ab KnownBoundary 0 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 19 ER2b ExonRegion 0 0.10 0.55 3.68 0.43 0.55 0.83 0.54 1.34 1.71 3.65 0.04 0.00 0.00 0.00 0.00 0.00 0.08 4.75 2.61 2.03 0.10 0.43 0.13 20 E2_Ac KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2c ExonRegion 0 2.38 24.13 62.83 20.20 16.72 24.08 14.60 41.81 59.27 81.96 2.66 0.00 0.00 0.00 0.00 0.00 0.03 106.59 106.82 79.58 3.80 11.81 7.60 22 E2a_E3a KnownJunction 0 10.08 43.35 83.70 12.65 31.07 24.53 17.14 40.25 57.84 82.41 2.37 0.00 0.00 0.00 0.00 0.00 0.00 147.78 189.09 71.78 5.19 8.57 4.35 23 E2a_E4a NovelJunction 0 0.00 3.03 5.80 2.70 0.00 10.11 0.00 6.33 7.58 15.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 5.82 0.00 0.00 0.00 24 ER3a ExonRegion 0 3.45 44.23 81.66 30.30 14.50 27.15 23.93 54.71 59.39 90.78 1.37 0.00 0.00 0.00 0.00 1.02 1.14 181.93 128.58 87.39 3.11 16.43 9.43 25 E3a_E4a KnownJunction 0 0.00 62.36 95.98 38.62 32.34 30.72 29.41 64.90 79.69 74.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 185.46 114.17 109.87 2.47 4.71 8.37 26 ER4a ExonRegion 0 1.86 33.38 122.33 54.55 17.32 57.81 41.39 99.39 100.99 126.52 2.55 0.00 0.00 0.08 0.00 1.31 0.00 279.34 209.22 151.85 4.37 21.12 9.21 27 E4a_E5a KnownJunction 0 0.00 51.37 131.90 81.08 21.82 7.89 25.53 121.50 107.52 135.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 310.94 269.18 173.92 5.62 18.06 0.00 28 ER5a ExonRegion 0 2.66 39.90 110.10 54.87 16.27 24.86 21.76 107.72 103.68 138.88 2.30 0.00 0.00 0.79 0.00 0.00 0.00 225.78 278.12 133.67 4.76 26.18 8.25 29 E5a_E6a KnownJunction 0 2.96 47.03 115.73 55.14 16.13 21.24 39.83 116.69 107.09 171.41 4.00 0.00 0.00 0.00 0.00 0.00 0.00 179.49 198.22 135.95 3.15 22.66 11.95 30 E5a_E7a NovelJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 2.25 0.00 1.65 3.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 15.81 20.52 0.00 0.00 0.00 31 ER6a ExonRegion 0 5.19 54.79 117.61 45.73 15.04 46.87 31.26 101.85 90.49 142.77 1.89 0.00 0.00 0.00 0.00 0.00 0.00 235.09 223.18 120.36 2.68 18.03 8.23 32 E6a_E7a KnownJunction 0 9.26 124.71 123.33 45.75 44.31 103.12 52.24 122.48 94.53 156.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 236.86 331.21 142.02 3.15 27.07 8.28 33 ER7a ExonRegion 0 4.57 47.09 103.24 39.18 22.31 53.60 42.30 92.10 87.36 144.74 1.19 0.00 0.00 0.29 0.00 0.00 0.00 192.93 210.89 116.23 1.63 19.72 11.00 34 E7a_E8a KnownJunction 0 10.74 70.32 118.33 49.48 15.37 46.96 39.48 77.26 102.23 179.57 0.00 0.00 0.00 2.47 0.00 0.00 0.00 245.11 256.10 106.42 0.00 25.11 15.88 35 ER8a ExonRegion 0 5.32 62.47 122.30 39.87 23.07 82.88 57.89 95.33 94.15 159.20 1.16 0.00 0.00 0.31 0.00 0.00 0.00 195.59 201.86 110.74 3.97 20.97 16.20 36 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 37 E8a_E10a KnownJunction 0 7.19 78.08 157.50 53.61 23.09 80.01 32.24 96.65 78.93 162.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 182.69 187.86 87.89 0.00 21.98 6.91 38 I8 Intron 0 1.72 12.97 13.64 8.17 5.26 2.78 11.07 5.26 7.68 7.77 0.12 0.00 0.05 0.02 0.09 0.00 0.08 20.18 19.04 27.27 0.66 2.27 3.61 39 I8_SR1 SilentIntronRegion 0 1.72 12.97 13.64 8.17 5.27 2.78 11.07 5.26 7.68 7.78 0.12 0.00 0.05 0.02 0.09 0.00 0.08 20.18 19.04 27.28 0.66 2.27 3.61 40 ER9a ExonRegion 0 2.69 13.60 8.77 7.84 3.33 2.34 3.38 2.46 3.54 2.64 0.00 0.00 1.23 0.43 0.00 0.00 0.00 12.38 16.27 6.10 0.70 1.24 2.86 41 I9 Intron 0 2.09 11.82 10.17 4.61 3.18 2.70 8.15 4.30 9.73 6.78 0.10 0.00 0.00 0.04 0.00 0.02 0.00 21.40 18.98 22.32 0.41 2.46 2.94 42 I9_SR1 SilentIntronRegion 0 2.02 10.87 8.83 4.86 3.09 2.44 8.28 3.79 9.22 7.64 0.16 0.00 0.00 0.00 0.00 0.00 0.00 20.45 22.15 24.11 0.45 2.72 3.49 43 I9_AR2 ActiveIntronRegion 0 0.00 10.17 16.82 1.79 0.00 6.13 5.89 2.26 9.67 4.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.82 18.01 24.43 0.00 2.08 2.13 44 I9_AR3 ActiveIntronRegion 0 1.84 15.32 10.43 2.83 3.63 2.52 10.49 3.88 12.58 8.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.87 19.38 21.18 0.09 2.60 4.54 45 I9_SR2 SilentIntronRegion 0 2.05 12.45 10.88 4.67 3.37 2.95 8.32 4.58 9.68 5.99 0.10 0.00 0.00 0.08 0.00 0.04 0.00 22.87 18.39 23.36 0.46 2.50 2.98 46 ER10a ExonRegion 0 11.21 91.14 194.20 71.05 25.76 65.57 43.61 139.78 146.18 194.04 2.87 0.00 0.00 0.28 0.00 0.00 0.00 248.07 329.25 157.61 3.41 30.13 21.31 47 E10a_E11a KnownJunction 0 10.82 103.73 201.80 57.37 36.76 42.99 37.05 131.60 171.29 180.89 4.84 0.00 0.00 0.00 0.00 0.00 0.00 197.19 231.25 160.75 0.00 24.19 19.80 48 ER11a ExonRegion 0 11.86 110.16 207.22 88.59 40.54 93.28 55.21 145.62 176.36 205.44 1.59 0.00 0.00 0.00 0.00 0.00 0.00 345.36 328.47 187.14 1.73 27.40 17.93 49 E11a_E12a KnownJunction 0 17.71 149.05 224.39 120.13 63.67 183.70 111.73 157.31 178.41 252.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 403.76 491.31 253.30 0.00 24.86 18.87 50 E11a_E14a NovelJunction 0 0.00 3.29 13.25 3.30 0.00 2.56 0.00 2.55 4.69 10.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 31.44 0.00 5.75 8.57 12.98 51 ER12a ExonRegion 0 10.60 79.82 200.23 84.93 39.40 83.93 59.05 130.06 145.21 170.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 223.25 221.98 168.12 1.67 13.92 12.28 52 E12a_E13a KnownJunction 0 9.63 55.12 139.05 45.98 14.18 38.50 19.39 63.71 58.56 96.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 122.62 90.17 86.35 0.00 0.00 4.27 53 E12a_E14a KnownJunction 0 0.00 0.00 3.08 0.00 0.00 0.00 2.25 3.74 1.45 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.19 2.36 0.00 5.39 30.13 54 E13a_E14a KnownJunction 0 3.63 48.61 110.91 49.68 20.03 27.54 28.97 50.40 94.15 128.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 178.00 114.54 86.42 0.00 2.51 0.00 55 ER13a ExonRegion 0 8.11 90.83 218.32 94.49 29.43 55.01 40.38 108.03 140.60 216.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 315.66 216.60 177.66 0.00 4.17 2.45 56 ER14a ExonRegion 0 6.15 111.42 225.96 93.92 47.44 58.95 50.77 127.17 158.35 205.20 3.13 0.00 0.00 0.00 0.00 0.00 0.00 250.74 276.02 181.23 4.96 26.02 22.46 57 E14a_E15a KnownJunction 0 0.00 134.98 225.66 89.90 60.10 83.25 51.54 136.16 141.61 222.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 263.77 332.24 158.07 5.31 11.02 19.63 58 ER15a ExonRegion 0 11.94 125.61 236.66 95.16 50.91 104.21 65.52 148.14 148.12 200.95 3.38 0.00 0.00 0.00 0.00 0.00 0.00 251.72 305.14 164.44 4.60 29.45 27.41 59 E15a_E16a KnownJunction 0 7.19 151.16 244.08 140.84 51.19 97.67 28.31 160.48 153.56 212.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 290.38 334.69 184.91 0.00 16.84 16.30 60 ER16a ExonRegion 0 9.52 125.37 222.45 92.71 57.52 69.03 53.48 142.83 158.41 216.91 1.69 0.00 0.00 0.00 0.00 0.00 0.00 265.55 324.42 158.94 2.64 27.92 17.92 61 E16_Da NovelBoundary 0 14.89 10.06 15.52 1.43 4.33 8.23 20.67 28.05 7.00 18.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.58 46.87 22.12 0.00 0.00 4.27 62 E16a_E17b KnownJunction 0 15.63 142.41 241.98 96.99 105.77 100.45 72.91 162.90 190.74 225.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.90 410.55 163.31 3.03 36.92 0.00 63 ER17a ExonRegion 0 0.17 3.27 8.81 2.43 1.17 1.43 5.61 4.00 4.71 5.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.56 10.55 11.60 1.65 2.05 2.39 64 E17_Ab KnownBoundary 0 0.00 0.00 13.48 3.30 0.00 2.38 10.42 2.01 6.25 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.79 9.60 14.83 0.00 0.00 0.00 65 ER17b ExonRegion 0 10.21 114.62 219.44 92.34 50.66 78.73 46.89 147.46 171.93 224.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 265.98 245.45 157.13 4.38 24.44 14.48 66 E17a_E18a KnownJunction 0 19.04 137.74 265.54 114.00 38.88 141.06 46.33 142.28 173.84 251.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 310.86 335.82 132.63 7.41 20.27 23.82 67 E18_Aa NovelBoundary 0 3.78 8.81 10.50 19.64 4.24 0.00 14.93 8.75 15.68 7.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.50 12.61 18.86 0.00 7.90 0.00 68 ER18a ExonRegion 0 11.27 85.43 170.13 70.94 36.29 76.98 48.18 89.89 107.88 168.20 1.15 0.00 0.00 0.00 0.00 0.00 0.00 190.43 191.48 117.87 3.73 18.20 10.19 69 E18_Da NovelBoundary 0 0.00 3.35 15.23 13.52 0.00 7.89 9.80 4.23 3.10 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 13.18 3.00 0.00 8.02 0.00 70 E18a_E19a KnownJunction 0 13.63 131.29 142.54 111.94 47.79 88.98 41.69 133.00 120.57 171.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 185.42 106.07 117.03 0.00 19.96 14.85 71 I18 Intron 0 0.59 2.06 32.50 12.55 2.71 4.74 9.65 4.04 2.04 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.62 18.51 12.75 0.00 2.69 0.00 72 I18_SR1 SilentIntronRegion 0 0.59 2.07 32.62 12.59 2.72 4.75 9.68 4.05 2.04 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.67 18.57 12.80 0.00 2.70 0.00 73 ER19a ExonRegion 0 16.87 131.34 146.55 65.84 39.58 57.69 41.55 86.29 98.66 135.70 0.79 0.00 0.00 0.04 0.17 0.00 0.39 132.65 149.53 98.60 1.93 19.07 10.93 74 IG9 Intergenic 0 2.95 6.74 13.32 7.06 7.58 6.33 4.43 5.35 18.67 8.66 0.48 0.00 0.08 0.14 0.00 0.14 0.00 4.46 7.91 5.64 0.02 0.57 0.83 75 IG9_AR1 ActiveIntergenicRegion 0 8.17 36.53 56.68 22.34 26.30 21.33 15.68 22.78 40.57 35.58 0.24 0.00 0.00 0.00 0.00 0.00 0.00 10.60 12.90 11.17 0.00 2.78 2.54 76 IG9_SR1 SilentIntergenicRegion 0 2.90 5.37 11.77 6.36 7.37 6.25 4.04 4.49 17.69 7.40 0.53 0.00 0.06 0.18 0.00 0.15 0.00 4.26 7.37 5.31 0.03 0.49 0.88 77 IG9_AR2 ActiveIntergenicRegion 0 0.00 2.03 6.32 3.23 2.53 0.00 2.65 1.73 37.70 16.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 18.94 2.58 0.00 0.00 0.00 78 IG9_AR3 ActiveIntergenicRegion 0 0.00 2.03 3.37 9.20 0.00 0.00 1.32 4.39 34.48 12.90 0.00 0.00 0.00 0.00 0.00 1.61 0.00 5.62 25.08 3.99 0.00 1.04 0.00 79 IG9_AR4 ActiveIntergenicRegion 0 1.53 1.89 4.90 5.82 1.16 1.33 2.17 2.43 17.83 5.00 0.56 0.00 0.00 0.00 0.00 0.31 0.00 3.82 8.89 5.65 0.00 0.22 0.00 80 IG9_SR2 SilentIntergenicRegion 0 1.75 0.42 4.64 5.27 1.66 0.99 1.63 4.07 16.93 3.74 0.40 0.00 0.00 0.00 0.00 0.00 0.00 3.85 8.00 6.62 0.00 0.00 0.00