Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C17orf56 Gene 0 67.77 31.84 160.74 61.52 48.51 57.19 36.67 128.69 121.65 146.40 100.51 13.51 22.36 106.73 122.62 103.94 66.91 61.14 59.60 60.16 68.07 54.75 50.80 2 300714 Transcript 0 10.89 11.71 123.56 32.10 11.29 5.79 15.41 49.41 42.71 57.73 17.37 6.00 6.82 11.36 45.49 4.02 4.77 27.61 14.31 18.41 4.70 14.27 0.00 3 374769 Transcript 0 92.14 20.89 82.28 37.02 20.09 61.29 23.93 74.80 95.60 79.74 77.90 7.62 11.61 106.02 79.21 80.69 47.33 48.87 25.85 31.84 58.04 47.96 53.72 4 ER1a ExonRegion 1 47.98 28.79 18.42 5.16 25.57 45.03 42.40 21.83 8.79 27.00 52.93 0.00 0.60 20.39 51.39 77.02 34.33 27.06 48.60 22.64 33.97 14.76 43.71 5 E1_Da NovelBoundary 0 9.85 3.35 18.66 0.00 0.00 2.73 3.84 16.51 25.69 13.59 14.21 0.00 0.00 2.30 0.00 8.03 0.00 34.74 0.00 0.00 11.06 2.45 15.54 6 E1a_E2a KnownJunction 0 13.78 14.21 44.41 7.96 3.74 7.72 16.61 33.48 13.14 49.00 11.74 0.00 0.00 4.41 4.45 23.50 12.81 26.82 4.80 3.26 2.29 0.00 7.85 7 I1 Intron 0 51.45 17.64 62.25 27.64 49.02 35.05 24.90 71.35 81.39 80.77 55.59 13.65 21.18 69.79 58.37 63.62 38.39 39.07 40.68 44.13 48.90 40.37 38.15 8 I1_AR1 ActiveIntronRegion 0 51.54 17.67 62.36 27.69 49.10 35.11 24.94 71.48 81.53 80.90 55.68 13.67 21.21 69.91 58.47 63.73 38.45 39.14 40.75 44.21 48.98 40.44 38.22 9 E2_Aa NovelBoundary 0 94.16 8.55 97.45 47.38 55.35 37.54 43.10 94.88 94.36 111.40 62.17 0.00 12.99 60.69 72.07 87.75 33.38 31.26 48.47 49.22 71.72 22.66 39.69 10 ER2a ExonRegion 0 106.58 20.17 77.58 35.45 69.35 31.25 39.05 64.05 57.88 77.60 77.40 18.15 24.29 63.92 82.19 72.96 65.57 50.04 45.56 37.80 58.17 35.28 58.65 11 E2_Da NovelBoundary 0 22.60 14.93 56.18 15.52 23.94 17.21 12.32 37.71 22.42 29.76 29.95 11.70 0.00 45.85 29.30 37.00 32.07 17.37 4.80 5.18 17.17 17.02 4.27 12 E2a_E3a KnownJunction 0 107.95 14.73 110.91 43.25 73.94 32.25 19.08 97.72 124.97 90.87 99.76 17.86 7.63 72.99 55.75 45.29 53.95 42.08 29.27 21.80 46.95 46.60 60.61 13 I2 Intron 0 11.31 5.93 34.59 7.89 9.10 12.47 9.00 18.35 18.48 27.39 28.17 2.31 6.30 28.28 29.43 41.38 14.43 16.51 19.60 8.96 13.91 10.12 7.61 14 I2_AR1 ActiveIntronRegion 0 11.37 5.96 34.81 7.94 9.16 12.55 9.06 18.47 18.59 27.57 28.35 2.32 6.34 28.45 29.62 41.65 14.52 16.61 19.72 9.01 14.00 10.18 7.66 15 E3_Aa NovelBoundary 0 19.93 3.35 32.55 7.09 12.31 26.86 6.49 29.45 29.05 44.24 26.32 5.40 13.64 26.02 37.58 42.13 19.45 15.88 47.25 15.08 28.85 13.59 11.44 16 ER3a ExonRegion 0 55.47 15.43 140.52 36.06 38.27 33.45 24.28 92.51 117.95 148.06 106.27 21.60 32.07 79.26 86.85 88.03 68.10 51.50 63.53 44.94 75.74 68.28 39.49 17 E3a_E4a KnownJunction 0 91.72 33.68 235.44 74.45 76.91 72.17 39.35 162.82 168.63 219.44 121.72 12.15 12.50 133.44 163.92 186.45 61.99 143.43 130.92 81.88 102.12 92.77 71.36 18 ER4a ExonRegion 0 63.25 26.72 206.27 68.45 65.19 77.23 44.13 139.47 169.78 177.64 125.33 12.94 28.19 121.84 126.48 140.48 80.20 113.24 94.31 62.72 77.48 63.26 78.29 19 E4_Da NovelBoundary 1 3.78 5.85 16.88 6.83 3.40 6.93 3.93 29.98 16.17 18.45 14.37 0.00 6.01 24.55 9.27 40.84 8.23 17.66 20.71 16.87 8.90 5.63 7.68 20 E4a_E5a KnownJunction 0 79.64 30.39 198.34 71.35 101.10 101.02 53.70 131.52 157.67 178.95 148.14 24.46 47.56 131.03 90.98 126.21 42.64 98.37 58.92 35.41 73.39 64.97 66.50 21 I4_SR1 SilentIntronRegion 0 5.80 1.26 9.76 2.14 5.38 6.08 3.32 10.43 9.34 12.75 10.05 2.33 10.30 15.69 8.42 12.89 7.76 9.07 14.90 5.49 12.41 4.94 3.27 22 I4_SR2 SilentIntronRegion 0 5.15 0.97 10.44 3.75 3.89 1.75 3.43 6.29 11.20 12.56 14.80 0.00 0.00 18.64 12.40 17.43 9.98 7.64 16.00 9.86 13.97 7.34 6.27 23 E5_Aa NovelBoundary 0 3.78 6.45 27.76 7.13 4.16 24.19 14.84 37.66 20.92 15.26 10.27 0.00 0.00 16.83 15.70 27.60 0.00 17.82 9.32 6.33 8.34 16.59 7.00 24 ER5a ExonRegion 1 40.87 35.23 195.37 60.99 65.52 79.96 63.30 115.63 138.84 174.28 107.84 9.80 45.31 127.61 96.04 104.51 56.50 64.05 53.96 50.53 67.57 68.73 60.33 25 E5a_E6a KnownJunction 0 62.83 55.98 255.55 76.51 58.74 81.60 76.36 133.24 164.35 177.26 78.39 18.61 45.13 130.44 82.45 123.73 52.17 92.86 58.17 44.74 54.98 56.40 53.44 26 ER6a ExonRegion 0 46.08 38.25 148.27 36.45 39.36 51.14 38.43 82.27 96.20 109.35 88.47 16.77 26.72 94.10 88.51 82.66 58.75 55.34 50.32 52.28 66.00 41.64 42.30 27 E6a_E7a KnownJunction 0 86.61 28.88 179.89 77.11 69.02 40.32 26.37 122.24 101.16 130.20 90.44 0.00 19.48 82.11 62.92 108.01 60.50 58.99 39.15 49.86 72.46 38.70 62.40 28 ER7a ExonRegion 0 85.48 23.75 178.16 58.68 44.71 49.64 32.75 102.29 93.85 128.06 103.38 10.34 24.56 115.58 117.14 100.19 62.44 64.36 44.15 52.95 75.48 52.35 55.10 29 E7a_E8a KnownJunction 0 159.21 21.90 101.74 57.37 28.52 65.19 26.76 93.40 100.58 95.17 106.13 6.30 6.82 67.75 57.85 72.46 47.59 65.25 27.11 23.59 61.04 48.19 62.23 30 E7a_E9a KnownJunction 1 10.89 11.71 123.56 32.10 11.29 5.79 15.41 49.41 42.71 57.73 17.37 6.00 6.82 11.36 45.49 4.02 4.77 27.61 14.31 18.41 4.70 14.27 0.00 31 ER8a ExonRegion 0 53.50 16.83 73.64 24.66 23.69 43.51 18.19 62.84 79.73 73.06 73.72 10.57 14.21 101.92 86.44 64.50 54.84 32.95 29.65 35.30 54.94 38.26 38.15 32 E8a_E9a KnownJunction 0 63.72 23.94 71.46 29.03 8.06 75.18 26.85 68.14 106.48 70.97 53.86 6.00 13.80 148.39 93.33 105.10 39.55 48.42 20.80 36.62 58.13 57.44 60.78 33 ER9a ExonRegion 0 48.67 22.35 167.90 48.86 24.59 42.74 25.31 142.01 135.07 162.49 90.97 8.96 15.70 109.35 114.62 93.53 75.85 63.68 47.53 57.15 66.38 56.99 40.64 34 E9a_E10a KnownJunction 0 81.87 25.52 253.07 80.64 30.22 57.18 45.22 230.55 189.15 215.41 142.93 12.60 34.09 130.38 212.37 128.77 131.18 139.61 80.00 54.46 87.29 71.89 48.74 35 ER10a ExonRegion 0 74.13 34.80 195.90 69.58 27.86 49.34 38.96 185.07 158.90 188.50 133.42 22.14 30.16 124.20 149.44 143.44 85.68 105.84 66.03 81.56 94.28 60.97 66.10 36 E10_Da NovelBoundary 0 63.72 32.63 138.52 44.42 34.89 18.34 17.93 87.57 92.79 77.71 51.33 0.00 6.66 66.28 75.78 73.48 56.29 83.24 35.67 23.84 42.87 35.52 38.50 37 E10a_E11a KnownJunction 0 47.19 16.77 133.11 37.99 19.44 40.94 24.02 112.05 112.99 136.89 110.45 37.21 41.39 96.18 51.80 75.71 50.21 60.07 44.80 60.53 85.31 26.82 40.29 38 Ix Intron 0 10.69 3.08 26.74 3.08 9.46 12.04 6.69 6.50 10.22 13.81 15.62 7.20 1.95 32.61 53.00 28.54 23.34 4.17 12.87 12.89 17.80 6.31 8.90 39 Ix_SR1 SilentIntronRegion 0 12.62 3.35 29.56 3.41 10.57 13.57 7.98 7.02 11.48 15.54 18.43 7.76 1.43 37.02 58.91 34.25 27.61 4.37 14.88 14.69 21.12 7.34 10.39 40 E11_Aa NovelBoundary 0 78.01 17.89 133.73 39.92 26.15 55.37 35.55 115.01 88.43 117.63 50.96 0.00 13.31 83.17 63.29 63.66 33.47 71.96 55.53 51.58 73.95 42.37 27.49 41 Ix_AR1 ActiveIntronRegion 0 2.61 2.15 16.22 1.84 5.04 6.04 1.25 4.68 5.38 6.88 3.87 5.35 4.69 14.90 30.55 4.37 5.44 3.70 4.31 5.76 3.76 2.08 2.76 42 ER11a ExonRegion 0 41.04 25.84 212.61 64.11 33.73 59.10 34.84 146.98 132.13 186.25 140.59 25.10 36.15 130.53 156.04 127.69 74.79 107.10 68.55 72.04 92.33 62.48 49.18 43 E11a_E12a KnownJunction 0 79.20 23.75 310.54 91.03 75.13 111.70 43.15 212.68 176.68 258.60 191.26 6.60 43.18 159.81 194.57 188.58 91.91 135.64 93.84 92.10 107.55 72.68 81.35 44 ER12a ExonRegion 0 30.93 26.92 220.16 67.31 39.03 58.36 27.06 165.27 154.92 213.66 138.01 13.98 40.72 136.32 189.94 153.05 92.25 74.10 81.78 87.72 93.88 70.82 78.42 45 E12_Da NovelBoundary 0 3.19 3.22 28.09 0.00 8.23 0.00 4.15 11.01 7.09 21.46 7.48 0.00 0.00 10.07 27.94 0.00 4.77 20.06 16.94 8.44 0.00 2.63 0.00 46 E12a_E13a KnownJunction 0 42.01 21.51 238.22 115.20 14.26 64.39 29.50 246.24 160.88 239.61 160.25 31.81 75.32 151.69 205.20 243.95 95.37 141.44 113.23 111.22 126.27 141.94 78.53 47 E13_Aa NovelBoundary 0 12.37 6.25 39.41 5.23 7.64 5.56 3.62 39.02 20.34 20.12 14.32 0.00 5.84 26.90 8.90 31.36 4.77 20.52 12.80 15.34 3.15 2.82 11.95 48 ER13a ExonRegion 0 80.28 38.87 170.24 76.21 59.66 64.22 40.95 144.77 128.21 152.88 98.46 13.16 19.24 108.29 130.77 104.72 64.75 56.18 63.10 64.93 64.54 56.36 48.38