Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D16 Gene 0 14.09 24.12 80.96 38.84 28.43 103.84 44.72 63.48 83.14 140.03 1.53 10.63 1.58 0.56 0.23 0.90 1.10 111.82 243.67 131.65 150.89 106.20 121.17 2 310924 Transcript 0 10.29 19.05 68.02 27.61 18.76 79.32 28.84 56.71 73.28 114.16 0.84 9.55 0.30 0.12 0.41 0.60 0.39 113.35 219.79 114.78 131.38 84.77 103.18 3 340848 Transcript 0 0.43 0.00 2.03 0.00 1.64 0.81 0.75 0.52 0.14 0.83 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 4.27 2.16 1.02 0.99 2.38 4 IG5_AR2 ActiveIntergenicRegion 0 1.47 2.12 4.77 2.10 0.93 6.22 2.53 6.05 3.84 6.54 0.00 0.31 0.00 0.00 0.00 0.00 0.00 2.40 13.58 7.41 7.67 1.99 6.65 5 ER1a ExonRegion 0 0.00 1.62 0.00 0.00 0.00 23.50 1.50 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.87 5.91 9.43 12.73 6.69 6 E1a_E2a KnownJunction 0 3.78 0.00 14.25 1.60 0.00 28.05 2.03 0.00 4.17 6.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 9.97 11.00 2.51 4.35 7 I1_AR1 ActiveIntronRegion 0 2.93 5.24 19.76 7.43 0.73 3.32 2.92 2.98 6.97 3.46 0.00 0.00 0.00 0.00 0.39 0.12 0.00 3.63 8.95 7.08 1.33 2.19 9.99 8 I1_AR4 ActiveIntronRegion 0 6.89 16.34 47.89 21.15 12.93 5.90 14.29 15.35 15.78 15.75 0.36 3.91 0.36 0.12 0.44 0.28 0.00 10.85 32.74 16.22 2.87 9.35 18.57 9 ER2a ExonRegion 0 0.57 4.40 37.86 10.39 5.01 24.28 7.21 26.30 27.48 60.40 0.81 1.89 0.00 0.00 0.00 1.25 1.39 76.12 168.72 70.50 89.85 44.86 114.36 10 E2a_E3a KnownJunction 0 3.33 11.58 55.65 11.39 31.92 73.25 25.61 44.24 56.71 116.98 0.00 12.30 0.00 0.00 0.00 0.00 0.00 143.01 268.81 80.47 124.36 114.20 106.11 11 ER3a ExonRegion 0 7.29 13.18 68.84 21.31 11.43 66.29 26.90 47.78 59.56 111.34 1.44 6.70 0.33 0.72 0.25 0.25 2.53 115.65 217.53 126.09 146.86 92.49 100.89 12 E3_Da NovelBoundary 0 3.70 5.92 16.71 0.00 12.99 4.20 1.68 12.32 4.69 12.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.52 36.71 38.29 8.90 5.76 19.46 13 E3a_E4a KnownJunction 0 10.74 32.03 59.76 13.45 11.71 89.66 30.43 72.25 57.35 98.07 2.21 6.30 0.00 0.00 0.00 0.00 0.00 98.37 204.71 117.42 148.08 62.52 93.22 14 I3_SR1 SilentIntronRegion 0 2.34 7.92 17.50 5.39 4.81 5.71 6.46 6.72 4.86 9.79 0.00 0.43 0.00 0.03 0.00 0.06 0.07 19.54 22.72 24.19 7.12 1.64 16.70 15 I3_AR1 ActiveIntronRegion 0 1.73 7.15 30.04 7.02 3.79 5.77 7.33 5.86 4.79 9.77 0.00 0.78 0.00 0.07 0.00 0.00 0.00 23.11 19.00 21.93 7.52 2.57 16.20 16 I3_SR2 SilentIntronRegion 0 2.90 9.63 23.54 8.15 7.06 5.96 9.15 8.49 5.25 10.06 0.02 1.06 0.13 0.11 0.17 0.03 0.18 17.05 19.21 17.24 5.96 3.19 14.81 17 I3_AR2 ActiveIntronRegion 0 2.70 7.46 15.28 17.34 20.81 6.27 12.14 15.94 12.45 12.39 0.00 0.60 0.00 0.00 0.00 0.00 0.00 10.16 30.97 20.69 9.24 2.55 9.22 18 I3_AR5 ActiveIntronRegion 0 7.97 7.54 18.52 9.30 5.35 0.54 15.81 12.61 4.87 7.15 0.00 11.46 0.00 0.00 0.00 0.00 0.00 4.02 14.80 8.26 3.37 3.55 22.63 19 I3_AR9 ActiveIntronRegion 0 13.45 8.41 24.16 8.07 10.07 6.10 13.54 16.58 12.09 24.19 0.05 1.46 0.00 0.00 0.00 0.00 0.00 2.27 9.87 9.67 1.78 3.07 8.76 20 I3_AR10 ActiveIntronRegion 0 7.55 3.86 17.39 5.92 17.59 15.37 13.82 10.13 6.14 12.06 0.69 2.05 0.00 0.00 0.00 0.00 0.00 5.31 15.83 7.34 2.17 5.59 9.99 21 ER4a ExonRegion 0 9.34 16.71 71.39 17.75 17.69 62.46 18.52 48.74 63.23 92.65 2.04 8.18 1.22 0.00 0.30 0.48 1.04 115.51 179.72 109.08 121.69 77.23 99.01 22 E4a_E5a KnownJunction 0 13.41 21.58 100.26 27.34 22.58 82.34 25.97 58.78 84.52 122.44 2.11 39.01 0.00 0.00 4.45 4.36 0.00 163.91 257.70 156.72 132.76 77.95 134.36 23 ER5a ExonRegion 0 6.68 23.51 88.78 29.26 21.33 69.37 32.46 62.87 85.26 135.27 1.92 9.98 1.33 0.46 1.08 0.50 0.00 96.89 195.04 122.10 150.12 72.91 83.58 24 E5a_E7a KnownJunction 0 13.71 23.75 54.26 27.07 18.08 50.14 19.25 57.71 73.23 108.84 0.00 6.30 0.00 0.00 0.00 0.00 0.00 100.28 248.29 105.27 109.10 73.66 79.30 25 E5a_E7b NovelJunction 0 7.19 16.12 33.23 10.62 15.87 46.28 17.05 36.60 37.90 44.64 0.00 12.60 6.82 0.00 0.00 4.36 0.00 63.80 70.21 63.85 71.48 47.64 51.22 26 ER6a ExonRegion 0 1.30 0.00 3.40 0.00 4.93 2.32 1.71 1.56 0.00 2.05 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 7.71 6.49 2.76 2.56 7.15 27 E6_Da NovelBoundary 0 14.60 18.09 12.12 11.22 4.07 5.51 11.92 14.75 7.96 8.52 2.68 0.00 6.33 0.00 0.00 0.00 0.00 24.29 76.14 5.88 14.95 28.66 21.00 28 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E7_Aa NovelBoundary 0 10.96 0.00 7.36 4.63 0.00 9.71 1.81 7.43 1.74 3.68 0.00 0.00 6.66 0.00 0.00 0.00 0.00 3.27 11.39 3.26 4.82 16.04 0.00 30 E7_Ab NovelBoundary 0 19.56 23.22 40.36 8.86 6.96 25.72 14.44 33.11 43.29 75.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.73 100.90 43.14 71.17 40.11 54.80 31 ER7a ExonRegion 0 10.58 28.47 107.53 43.61 23.41 53.64 24.16 76.92 118.26 155.12 0.00 21.65 0.00 0.00 0.00 0.00 0.00 154.29 254.03 110.64 160.87 88.03 116.73 32 ER7b ExonRegion 0 13.72 32.64 77.12 32.15 21.16 80.68 34.21 61.90 91.67 134.61 0.29 9.71 1.20 0.42 1.27 1.94 0.00 100.31 205.22 115.68 157.48 90.38 104.00 33 E7a_E8a KnownJunction 0 7.33 20.06 48.73 31.83 31.32 43.04 31.36 65.02 85.79 119.16 2.68 11.70 0.00 0.00 0.00 0.00 0.00 80.30 172.99 107.19 143.20 66.25 69.23 34 I7 Intron 0 11.22 4.90 15.67 10.96 6.97 6.01 7.40 8.44 7.81 12.03 0.00 0.00 0.00 0.22 0.20 0.00 0.00 9.56 23.04 11.49 9.56 11.65 16.70 35 I7_SR1 SilentIntronRegion 0 11.26 4.92 15.72 11.01 6.99 6.03 7.43 8.47 7.83 12.07 0.00 0.00 0.00 0.22 0.20 0.00 0.00 9.60 23.13 11.53 9.60 11.69 16.77 36 E8_Aa NovelBoundary 0 25.71 6.38 14.58 8.26 7.22 4.88 4.50 8.21 2.98 14.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 0.00 9.46 2.59 13.72 12.29 37 ER8a ExonRegion 0 12.16 25.55 76.10 41.12 30.33 86.99 40.03 67.85 102.95 147.42 2.84 10.66 1.32 0.46 0.19 1.78 0.00 65.80 212.35 138.20 138.55 90.91 110.17 38 E8_Da NovelBoundary 0 14.67 3.29 4.20 3.33 19.95 5.74 8.26 4.11 3.39 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.55 0.00 6.52 5.93 0.00 0.00 39 E8a_E9a KnownJunction 0 24.08 36.24 92.40 70.82 45.42 172.63 82.05 98.45 134.37 215.03 6.95 12.60 0.00 0.00 4.45 3.33 0.00 145.38 356.15 171.23 208.19 92.34 159.54 40 I8 Intron 0 14.90 2.19 8.66 6.56 9.61 2.37 5.71 5.74 5.55 6.51 0.00 1.02 0.28 0.23 0.00 0.00 0.00 12.34 13.96 6.57 7.75 8.38 13.08 41 I8_SR1 SilentIntronRegion 0 19.32 3.81 11.02 9.22 17.13 1.96 9.77 8.53 5.84 4.68 0.00 2.28 0.00 0.00 0.00 0.00 0.00 8.54 9.83 11.81 11.85 7.55 12.44 42 I8_AR1 ActiveIntronRegion 0 30.35 2.16 12.74 10.25 14.40 2.93 7.47 13.72 2.52 4.63 0.00 1.47 0.00 0.00 0.00 0.00 0.00 13.49 11.15 9.79 5.73 4.33 14.21 43 I8_AR2 ActiveIntronRegion 0 12.41 1.81 7.73 5.61 7.39 2.42 4.59 4.32 5.80 7.15 0.00 0.69 0.37 0.31 0.00 0.00 0.00 13.19 15.27 5.03 6.99 9.00 13.18 44 E9_Aa NovelBoundary 0 16.52 3.16 11.18 2.96 0.00 2.84 3.89 5.38 10.27 18.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.10 12.80 3.07 14.70 13.35 19.63 45 ER9a ExonRegion 0 23.05 29.72 135.62 69.49 41.09 129.47 64.26 107.36 141.35 220.85 3.55 11.03 5.87 1.52 0.56 0.18 0.76 170.13 349.09 192.56 242.67 153.90 159.69 46 E9_Da NovelBoundary 0 15.63 0.00 14.46 9.99 0.00 8.01 1.90 8.95 11.57 16.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.07 42.26 36.30 8.77 19.59 50.71 47 E9a_E10a KnownJunction 0 48.30 53.35 177.97 97.82 52.12 149.86 67.57 137.15 184.81 289.20 7.84 18.31 12.82 0.00 0.00 0.00 4.77 212.45 620.82 244.04 224.31 188.11 268.98 48 I9 Intron 0 8.02 1.68 17.24 13.02 5.53 6.82 7.94 10.30 6.72 9.66 0.00 0.00 0.00 0.17 0.00 0.00 0.00 14.49 24.15 11.14 12.75 15.94 23.48 49 I9_AR1 ActiveIntronRegion 0 10.42 1.01 18.05 9.39 3.26 8.40 7.27 13.04 6.54 10.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.47 19.94 8.19 18.08 20.47 21.87 50 I9_SR1 SilentIntronRegion 0 9.94 2.51 33.37 14.43 4.87 16.50 16.10 15.77 6.73 11.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.96 40.90 11.89 19.01 18.49 40.69 51 I9_AR2 ActiveIntronRegion 0 10.58 2.03 20.63 13.40 8.03 14.98 5.96 17.28 2.68 13.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.33 32.92 8.51 16.16 30.56 30.35 52 E10_Aa NovelBoundary 0 13.71 3.09 30.13 12.75 8.15 0.00 6.23 14.62 7.29 8.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.38 46.21 9.78 14.76 9.00 3.84 53 ER10a ExonRegion 0 21.07 32.62 154.89 76.15 42.65 147.26 56.94 93.80 120.86 214.40 2.48 19.31 6.32 1.46 0.56 1.62 2.15 186.23 346.64 201.57 213.24 159.96 175.21 54 E10a_E11a KnownJunction 0 20.08 32.63 126.64 61.76 48.47 189.66 87.18 70.15 94.44 204.29 2.11 6.30 0.00 0.00 0.00 0.00 0.00 143.84 328.57 176.60 189.29 163.00 201.03 55 ER11a ExonRegion 0 10.55 23.71 111.60 44.73 29.86 117.52 43.37 68.77 104.39 171.95 2.54 15.83 2.24 0.76 0.00 0.89 0.94 144.58 246.44 152.53 163.32 120.05 149.12 56 E11a_E13a KnownJunction 0 13.93 11.51 93.70 57.70 11.38 132.99 35.73 95.62 118.08 194.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.22 292.06 171.81 212.82 171.39 121.22 57 I11 Intron 0 5.88 2.36 24.17 5.11 6.22 7.69 2.99 8.98 6.89 8.94 0.00 0.74 0.30 0.07 0.00 0.00 0.43 5.10 15.22 7.55 6.54 7.40 7.77 58 I11_SR1 SilentIntronRegion 0 6.58 2.49 24.86 5.35 5.73 8.61 3.27 9.76 6.97 9.56 0.00 0.65 0.39 0.00 0.00 0.00 0.54 5.12 14.43 7.16 6.66 7.51 7.73 59 I11_AR1 ActiveIntronRegion 0 3.37 1.91 21.92 4.29 8.07 4.45 2.00 6.24 6.68 6.74 0.00 1.08 0.00 0.35 0.00 0.00 0.00 5.07 18.26 9.10 6.18 7.08 8.01 60 ER12a ExonRegion 0 0.00 0.00 2.70 0.00 0.00 0.12 0.53 0.00 0.41 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.29 0.42 0.00 61 ER13a ExonRegion 0 13.68 13.94 77.29 40.96 24.48 110.29 42.15 65.41 106.34 154.12 0.67 10.22 0.00 0.00 0.00 1.09 0.00 146.90 231.01 152.28 167.56 97.54 127.07 62 E13a_E14a KnownJunction 0 24.15 46.64 105.05 58.33 35.99 165.02 67.79 114.80 146.50 185.45 0.00 6.30 0.00 0.00 0.00 0.00 0.00 184.59 448.86 237.07 220.36 144.88 217.85 63 ER14a ExonRegion 0 23.12 36.81 85.72 53.94 46.34 158.57 72.90 79.28 98.35 170.49 1.36 14.44 1.61 0.59 0.00 1.10 0.93 112.49 304.03 146.43 165.87 138.62 142.96 64 IG4 Intergenic 0 28.71 60.09 132.42 87.13 73.18 210.33 82.77 108.17 112.14 199.75 0.80 8.73 2.68 0.46 0.40 0.65 0.72 130.32 345.37 163.38 179.48 155.81 170.75 65 IG4_AR1 ActiveIntergenicRegion 0 28.74 60.15 132.53 87.20 73.25 210.51 82.84 108.26 112.23 199.92 0.80 8.74 2.68 0.46 0.40 0.65 0.72 130.43 345.66 163.52 179.63 155.94 170.89