Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AZI1 Gene 0 24.02 40.63 196.35 55.65 41.95 51.39 69.84 118.68 78.65 163.85 62.21 7.64 13.25 57.38 52.71 48.16 47.49 90.87 92.41 83.31 28.94 18.27 22.24 2 269392 Transcript 0 6.65 16.70 52.26 29.97 22.58 38.46 22.14 34.24 28.66 50.30 34.46 0.00 0.87 27.75 14.79 27.47 15.79 31.85 52.54 34.43 15.65 10.07 2.70 3 450824 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 374782 Transcript 0 3.48 3.35 10.29 1.86 19.44 5.28 6.01 11.95 3.44 6.50 2.47 0.00 0.00 2.47 0.00 0.00 4.30 1.87 3.48 0.00 12.36 2.51 0.00 5 ER1a ExonRegion 0 8.90 5.27 7.68 0.25 3.71 23.47 11.81 3.14 3.45 4.80 10.53 0.00 0.00 6.60 12.14 2.85 16.77 5.81 32.31 11.72 5.35 3.74 2.88 6 E1_Ab KnownBoundary 0 21.71 15.19 27.53 1.90 12.48 58.55 23.14 14.13 10.94 30.62 24.43 0.00 0.00 15.13 9.89 4.02 35.90 50.70 66.17 22.75 16.87 11.51 8.11 7 ER1b ExonRegion 0 7.14 5.83 23.88 5.03 2.22 13.85 10.93 17.61 9.77 29.01 20.23 0.12 0.21 12.96 19.75 16.17 17.83 22.12 30.35 18.81 10.22 3.37 7.18 8 E1a_E2a KnownJunction 0 0.00 2.83 40.06 5.13 7.64 4.88 1.68 30.48 24.59 50.90 30.96 0.00 6.33 34.26 61.56 23.24 16.83 55.05 97.41 37.07 12.42 15.25 4.01 9 ER2a ExonRegion 0 3.88 15.76 110.81 15.48 11.78 27.68 25.89 77.73 50.58 107.81 36.49 4.80 6.19 30.25 40.72 32.89 33.66 90.43 88.24 65.80 15.86 15.69 15.86 10 E2a_E3a KnownJunction 0 16.89 26.11 187.75 52.44 7.72 47.25 68.63 102.23 78.44 186.66 66.81 5.85 6.82 31.55 41.54 31.19 49.93 128.67 133.56 104.12 20.63 35.45 17.93 11 ER3a ExonRegion 0 20.70 34.85 182.15 49.05 11.18 37.95 54.16 133.60 89.76 188.66 64.68 8.66 18.02 46.12 57.17 43.30 53.20 119.27 108.70 103.99 27.26 27.79 19.78 12 E3a_E4a KnownJunction 0 21.26 44.20 210.64 38.19 15.28 42.87 53.92 162.57 104.22 180.46 73.02 6.30 5.68 40.79 37.46 42.21 33.57 166.56 70.68 81.37 49.05 22.60 22.45 13 ER4a ExonRegion 0 15.94 28.33 227.66 46.10 35.20 57.84 61.11 135.26 102.42 199.99 71.48 9.00 23.86 57.55 47.98 70.12 58.56 149.99 169.57 90.58 36.79 27.96 35.34 14 E4_Da NovelBoundary 0 2.96 9.60 12.98 7.36 0.00 0.00 17.18 6.61 2.81 14.53 9.58 0.00 0.00 7.18 13.35 8.63 0.00 26.49 14.40 8.95 5.68 0.00 4.35 15 E4a_E5a KnownJunction 0 18.15 42.62 324.59 72.05 23.60 79.73 70.09 198.92 119.62 267.44 79.07 18.91 20.29 59.92 44.50 90.49 50.58 183.18 255.44 118.57 44.54 34.66 31.50 16 I4 Intron 0 2.99 2.87 9.20 4.50 4.32 2.59 12.81 6.23 4.08 7.92 4.68 0.00 2.34 4.01 5.75 8.99 2.00 19.81 5.78 7.72 2.22 2.10 1.18 17 I4_SR1 SilentIntronRegion 0 3.01 2.89 9.27 4.54 4.35 2.61 12.91 6.28 4.11 7.99 4.71 0.00 2.35 4.04 5.79 9.06 2.01 19.97 5.83 7.78 2.24 2.12 1.19 18 E5_Aa NovelBoundary 0 6.59 0.00 14.69 4.69 17.32 2.90 10.29 8.30 3.56 3.71 9.63 6.30 0.00 7.24 8.90 14.61 0.00 22.72 9.60 9.20 10.56 0.00 3.93 19 ER5a ExonRegion 0 11.01 28.03 211.69 39.82 33.30 49.71 54.93 149.13 103.45 225.59 76.53 8.86 25.10 65.46 73.98 64.23 60.86 155.31 151.33 95.33 45.28 28.00 26.22 20 E5a_E6a KnownJunction 0 10.74 57.10 255.99 59.60 19.27 46.45 110.58 191.04 110.50 239.45 69.70 12.60 12.99 58.51 48.21 54.34 46.10 115.78 155.77 75.36 39.41 31.54 10.76 21 I5_SR2 SilentIntronRegion 0 0.68 2.00 6.99 3.90 2.43 6.80 8.26 9.83 7.56 14.53 5.54 1.42 0.77 2.18 4.21 4.13 5.90 21.96 6.54 7.95 1.30 0.49 2.34 22 ER6a ExonRegion 0 15.54 32.77 203.57 50.16 23.96 51.06 64.54 129.83 92.42 191.64 66.82 11.85 7.78 62.71 63.85 48.52 52.96 90.54 115.71 114.43 31.76 24.11 17.88 23 E6a_E7a KnownJunction 0 28.52 68.67 194.85 51.41 66.89 114.88 91.15 152.06 107.46 212.45 85.71 18.46 20.45 54.56 105.82 58.36 59.93 177.63 193.98 122.53 56.40 32.15 28.51 24 ER7a ExonRegion 0 13.05 33.89 190.20 51.05 32.40 62.45 66.51 126.18 80.51 166.50 80.15 8.52 13.83 68.11 62.33 56.96 45.92 124.58 117.18 76.78 28.94 17.97 21.28 25 E7a_E8a KnownJunction 0 2.89 34.40 201.94 52.21 47.37 68.31 40.85 111.93 82.09 141.35 81.13 6.90 13.80 52.56 62.43 65.54 33.57 115.28 83.96 71.65 22.18 24.74 11.69 26 E8_Aa NovelBoundary 0 2.82 0.00 38.53 5.59 8.15 0.00 17.09 2.22 12.04 21.38 4.84 0.00 0.00 4.65 4.45 12.22 0.00 25.70 0.00 8.37 2.97 5.08 8.71 27 ER8a ExonRegion 0 9.29 21.15 168.57 38.65 22.83 37.70 51.86 74.40 62.36 143.13 52.71 5.21 9.34 61.94 38.45 38.23 38.49 86.84 63.87 72.54 24.80 11.28 21.13 28 E8a_E9a KnownJunction 1 7.26 17.56 225.81 68.99 19.02 76.32 62.58 100.80 77.00 191.96 40.59 5.85 13.64 45.74 33.75 95.53 34.13 136.88 78.40 57.01 38.30 18.19 19.89 29 ER9a ExonRegion 0 12.64 44.22 256.37 50.33 21.68 55.42 64.21 102.38 88.21 188.96 71.57 3.03 12.43 59.83 56.81 78.14 40.43 116.91 105.04 89.43 37.76 14.05 31.90 30 E9a_E10a KnownJunction 0 21.93 54.53 276.96 51.97 3.90 62.12 80.86 136.82 111.83 227.79 69.65 7.65 28.24 49.62 73.18 62.12 54.51 122.20 134.22 132.24 28.97 13.78 30.13 31 ER10a ExonRegion 0 12.32 37.98 263.53 59.48 31.90 38.75 62.32 133.22 94.77 176.16 73.30 16.29 18.37 63.43 46.18 53.25 41.25 130.06 80.86 102.23 32.79 16.35 22.38 32 E10_Da NovelBoundary 0 3.78 0.00 23.54 6.56 4.07 5.11 10.42 16.06 13.05 23.80 4.74 0.00 0.00 4.83 6.30 7.95 0.00 32.21 4.61 12.53 0.00 2.69 0.00 33 E10a_E11a KnownJunction 0 13.93 27.82 208.60 42.15 15.87 44.01 58.65 134.07 105.15 162.19 40.27 13.50 26.78 42.38 28.80 38.02 35.72 98.20 90.45 126.24 36.08 11.63 24.50 34 E10a_E12a NovelJunction 0 0.00 0.00 21.76 2.00 0.00 0.00 1.85 2.01 3.24 2.85 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 35 E11_Aa NovelBoundary 0 3.56 0.00 32.02 2.06 3.82 5.79 8.70 22.43 6.16 21.60 2.63 0.00 0.00 0.00 4.45 0.00 0.00 27.86 9.51 3.26 0.00 0.00 0.00 36 ER11a ExonRegion 0 9.36 24.10 217.33 66.95 36.70 44.28 64.96 137.77 86.30 185.24 57.52 5.88 17.77 64.55 52.62 42.39 48.44 96.20 89.09 100.11 33.40 15.86 12.12 37 E11a_E12a KnownJunction 0 17.26 30.26 234.00 99.89 67.66 58.15 84.35 133.90 112.27 189.89 52.01 6.30 33.93 79.05 65.02 56.48 49.28 130.62 171.77 102.59 32.56 7.41 20.49 38 I11_AR1 ActiveIntronRegion 0 0.71 1.63 12.83 4.72 2.14 3.67 5.30 8.64 4.12 12.31 2.83 0.00 0.00 2.92 11.41 5.94 0.00 6.16 3.82 2.13 2.20 0.42 2.94 39 ER12a ExonRegion 0 18.39 39.40 195.51 59.89 45.96 51.27 64.87 101.84 81.31 171.66 65.76 6.72 11.84 69.57 55.16 52.07 49.64 94.43 93.45 87.73 32.36 17.82 21.92 40 E12_Da NovelBoundary 0 0.00 2.43 45.65 18.91 13.58 14.88 14.31 27.15 17.59 42.01 17.06 5.40 0.00 11.24 13.97 24.01 11.31 26.70 37.74 22.37 7.10 2.51 3.50 41 E12a_E13a KnownJunction 0 27.49 37.95 110.61 23.71 25.98 42.19 44.96 52.12 59.40 87.87 56.86 13.20 0.00 34.43 42.03 48.88 25.53 71.18 74.45 57.40 24.77 2.63 20.40 42 E12b_E13a KnownJunction 0 6.59 28.55 79.27 50.14 34.30 52.19 28.88 56.76 43.00 73.84 50.75 0.00 0.00 37.32 19.66 43.24 12.25 45.18 65.51 46.40 23.97 14.21 0.00 43 ER12b ExonRegion 1 4.47 16.27 69.85 39.52 29.73 39.73 25.74 42.83 39.52 72.25 42.09 0.00 2.61 39.34 12.57 36.33 18.34 44.55 59.81 45.15 17.63 12.27 5.22 44 ER13a ExonRegion 0 22.19 41.06 160.23 51.08 63.51 63.92 93.48 96.81 96.44 148.19 75.86 8.12 11.31 75.29 55.75 68.17 66.95 106.74 125.63 86.30 38.32 19.30 29.22 45 E13_Da NovelBoundary 0 7.56 0.00 18.48 1.83 4.33 2.16 14.40 10.51 9.32 6.61 9.37 0.00 12.66 11.54 4.45 19.91 8.70 17.16 3.58 3.26 2.90 0.00 4.01 46 E13a_E14a KnownJunction 0 26.23 56.96 113.48 39.19 33.70 58.21 74.68 58.41 74.42 119.54 47.70 6.30 13.31 34.61 46.85 37.68 40.86 47.38 74.64 66.60 16.74 19.47 10.50 47 ER14a ExonRegion 0 23.50 51.76 152.03 45.06 56.66 58.22 92.78 96.66 81.36 152.20 70.55 8.04 24.08 58.00 50.06 48.66 48.44 59.66 111.59 83.67 30.89 20.85 20.58 48 E14a_E15a KnownJunction 0 37.04 58.28 252.27 99.92 84.64 76.49 102.50 164.62 120.05 169.63 71.60 11.70 13.64 90.18 49.82 47.51 51.05 146.50 158.03 100.22 40.83 17.45 33.38 49 ER15a ExonRegion 0 22.59 38.25 194.45 57.15 55.98 62.76 83.49 100.10 85.93 164.31 69.14 13.02 18.05 61.15 46.86 46.70 55.25 81.64 99.40 80.95 34.68 25.22 19.34 50 E15a_E16a KnownJunction 0 53.27 86.76 350.96 84.54 96.35 118.45 119.99 162.86 107.06 207.88 102.82 7.65 38.31 61.33 56.99 48.79 72.37 117.19 82.17 90.25 31.51 14.21 41.15 51 ER16a ExonRegion 0 25.27 52.87 311.12 90.68 59.44 62.27 109.37 149.12 103.98 200.91 80.70 8.25 30.34 73.31 47.73 57.16 60.74 106.71 106.67 99.80 32.08 20.25 34.09 52 E16_Da NovelBoundary 0 7.11 0.00 30.96 10.99 3.40 20.39 12.14 9.24 22.34 16.87 0.00 0.00 0.00 4.89 0.00 8.54 3.74 44.11 19.01 21.41 2.59 2.63 0.00 53 E16a_E17a KnownJunction 0 59.27 66.17 321.69 97.66 83.96 45.66 146.53 190.79 100.29 216.37 130.30 12.60 13.31 60.86 34.61 72.29 75.74 119.80 110.78 132.56 23.29 28.53 32.35 54 E17_Aa NovelBoundary 0 23.12 6.58 45.86 31.00 49.75 46.11 50.61 43.05 19.99 42.79 2.16 0.00 0.00 18.66 9.27 22.56 3.93 20.27 22.21 16.43 0.00 2.51 7.68 55 ER17a ExonRegion 0 47.18 73.56 327.84 94.65 98.07 105.43 156.60 219.04 116.04 248.01 90.81 16.90 17.39 90.49 56.25 66.43 80.25 96.07 100.66 100.66 33.36 24.88 36.84 56 E17_Da NovelBoundary 0 0.00 0.00 6.33 1.40 7.30 10.90 12.85 3.90 5.03 9.08 2.16 0.00 6.17 5.36 0.00 0.00 0.00 6.43 0.00 5.05 2.78 0.00 10.76 57 E17a_E18a KnownJunction 0 60.16 60.58 364.42 104.45 87.35 75.70 128.16 222.13 120.11 241.87 94.97 0.00 6.82 71.93 48.09 53.58 32.91 116.24 99.67 92.36 16.31 26.51 19.12 58 ER18a ExonRegion 0 31.49 57.97 237.52 63.99 60.63 63.31 85.28 141.77 85.45 189.90 56.87 11.55 7.71 70.47 49.02 41.43 41.80 85.38 75.80 90.67 31.69 17.71 16.14 59 E18a_E19a KnownJunction 0 28.08 70.78 252.47 83.81 71.22 66.44 87.88 135.59 79.46 155.93 45.91 5.55 6.82 73.40 94.81 50.41 45.63 96.46 112.38 98.05 11.74 17.57 19.21 60 E18a_E20a KnownJunction 0 3.48 3.35 10.29 1.86 19.44 5.28 6.01 11.95 3.44 6.50 2.47 0.00 0.00 2.47 0.00 0.00 4.30 1.87 3.48 0.00 12.36 2.51 0.00 61 ER19a ExonRegion 0 19.87 28.98 159.58 34.67 35.90 47.07 73.23 60.08 37.16 95.07 38.89 1.68 7.90 40.80 39.89 16.57 23.87 52.16 48.75 71.16 17.45 10.88 12.54 62 E19a_E20a KnownJunction 1 17.26 52.69 200.61 38.12 25.38 58.77 104.18 62.43 30.76 90.42 40.80 0.00 12.99 49.74 9.39 12.56 26.37 61.35 35.77 54.07 18.72 9.00 15.79 63 ER20a ExonRegion 0 43.64 41.50 201.02 65.36 45.49 71.30 83.94 96.28 67.36 139.34 60.08 5.21 12.76 60.46 60.98 49.19 36.25 87.19 86.17 74.31 27.81 11.51 26.21 64 E20a_E21a KnownJunction 0 35.04 57.56 212.15 87.83 27.50 31.97 82.28 148.28 70.25 156.18 55.33 12.00 14.45 72.75 90.74 59.56 45.63 101.10 102.21 108.47 44.05 14.63 37.73 65 ER21a ExonRegion 0 43.85 40.48 187.99 46.92 30.68 49.07 84.24 106.93 59.52 155.93 50.18 10.22 19.32 56.50 57.06 55.40 49.21 69.43 79.29 77.87 37.43 11.00 32.89 66 E21a_E22a KnownJunction 0 52.23 63.28 222.88 62.93 35.23 51.11 58.82 78.12 75.75 178.95 60.07 5.55 6.82 51.39 57.11 15.21 44.88 76.36 78.12 71.91 29.28 6.12 24.50 67 I21 Intron 0 8.94 4.52 49.40 7.56 9.52 8.86 10.30 21.89 11.46 28.39 9.23 2.12 0.21 7.66 8.60 14.86 5.50 21.69 17.70 13.59 2.20 3.36 4.08 68 I21_SR1 SilentIntronRegion 0 9.05 4.60 50.20 7.69 9.69 9.00 10.45 22.28 11.66 28.86 9.37 2.14 0.22 7.80 8.75 15.12 5.60 22.05 18.01 13.81 2.24 3.42 4.15 69 E22_Aa NovelBoundary 0 3.41 2.70 22.80 10.89 12.22 8.18 5.87 12.61 9.66 13.94 11.37 0.00 0.00 9.77 8.90 20.85 12.53 17.20 12.33 8.25 3.15 0.00 3.93 70 ER22a ExonRegion 0 56.51 84.22 239.38 93.14 91.31 76.39 91.79 153.10 89.96 211.46 76.86 7.11 17.78 72.43 69.75 75.61 58.45 117.49 110.08 96.80 39.61 19.39 34.34 71 E22a_E23a KnownJunction 0 96.91 142.01 320.78 153.46 155.94 83.02 120.30 232.07 124.30 282.35 103.18 24.31 20.45 74.64 53.40 59.56 86.21 146.12 83.48 130.14 32.93 28.41 67.44 72 ER23a ExonRegion 0 53.06 55.43 302.94 107.50 67.53 58.21 95.74 207.42 111.62 236.66 74.85 11.70 15.12 73.93 74.93 62.50 57.52 108.11 96.72 101.88 32.34 19.55 39.22 73 E23a_E24a KnownJunction 0 43.42 66.11 358.62 161.35 62.39 56.39 78.12 279.30 140.07 272.14 54.17 13.05 0.00 50.39 89.99 62.38 50.58 99.49 109.93 67.88 13.78 28.04 31.41 74 ER24a ExonRegion 0 36.25 79.55 243.21 78.93 63.09 61.69 89.61 161.35 80.67 180.83 57.32 6.07 10.72 47.62 69.17 39.80 41.76 68.25 62.56 87.27 26.18 16.78 14.34 75 E24a_E25a KnownJunction 0 42.01 65.78 296.88 85.94 95.08 58.32 110.27 199.41 91.26 225.75 78.49 0.00 21.75 61.63 56.00 31.02 72.56 111.97 95.06 117.86 17.17 3.12 24.33 76 ER25a ExonRegion 0 27.51 66.27 214.64 60.99 44.43 38.45 59.51 177.80 77.41 203.04 74.94 0.50 13.76 40.98 62.12 36.83 37.83 60.31 72.85 110.74 16.33 20.66 21.71 77 E25_Da NovelBoundary 0 7.48 18.81 27.70 8.16 22.92 29.36 37.23 6.57 12.09 15.47 4.21 0.00 0.00 2.47 0.00 7.18 4.77 35.82 0.00 14.51 4.88 3.12 0.00 78 E25a_E26a KnownJunction 0 20.67 54.40 181.69 59.60 6.71 17.26 18.33 169.96 81.48 184.06 72.76 6.00 6.82 35.91 53.53 49.05 30.29 76.15 97.13 78.11 8.59 21.68 24.67 79 E26_Aa NovelBoundary 0 10.74 12.56 29.06 14.45 12.22 8.46 12.81 6.86 9.20 18.02 7.48 6.30 0.00 0.00 4.45 11.54 0.00 33.49 8.94 29.47 0.00 6.25 0.00 80 ER26a ExonRegion 0 32.90 31.49 135.83 57.52 27.70 30.88 48.51 111.63 67.38 132.99 53.99 4.43 5.30 43.16 49.46 30.69 56.25 50.29 75.95 71.47 19.74 25.43 14.43 81 ER26b ExonRegion 0 1.41 1.36 2.04 1.82 1.78 1.83 0.00 1.73 1.24 6.12 0.64 0.00 0.00 1.62 0.00 3.96 0.00 6.78 0.00 2.13 0.00 0.00 0.98 82 IG23 Intergenic 0 1.05 1.18 7.37 3.06 3.32 2.86 4.07 3.85 9.93 9.13 0.15 0.00 0.00 0.16 0.46 0.42 0.11 14.34 9.80 11.11 0.39 0.07 0.87 83 IG23_SR1 SilentIntergenicRegion 0 1.05 1.19 7.37 3.06 3.32 2.86 4.08 3.85 9.94 9.13 0.15 0.00 0.00 0.16 0.46 0.42 0.11 14.34 9.81 11.11 0.39 0.07 0.87