Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JMJD6 Gene 0 32.38 89.19 100.78 90.34 93.83 106.37 66.92 138.64 108.48 183.73 60.76 34.75 14.89 50.58 62.78 48.21 49.02 51.91 63.17 97.56 25.12 31.42 33.66 2 303996 Transcript 0 2.38 3.56 7.35 5.96 13.04 4.36 2.98 2.81 8.03 7.45 3.62 2.71 1.76 3.65 3.26 1.11 3.71 1.62 21.50 3.19 0.00 0.26 2.94 3 445478 Transcript 0 7.49 79.22 31.97 56.41 63.04 80.30 34.90 114.90 83.87 140.23 5.60 9.56 3.74 6.05 5.19 7.65 4.25 31.63 21.70 77.26 5.90 6.68 8.61 4 397625 Transcript 0 13.55 4.59 9.12 10.24 12.38 8.86 8.76 15.04 22.41 20.36 32.26 11.72 0.72 22.78 18.96 11.72 26.82 5.85 14.87 10.25 16.47 5.98 11.41 5 344991 Transcript 0 0.00 9.15 1.84 3.41 2.68 5.20 1.77 10.66 8.65 14.91 0.64 0.72 0.78 0.27 0.00 0.99 0.55 4.31 1.06 9.57 1.10 0.35 0.00 6 ER1a ExonRegion 0 6.66 5.27 4.47 3.91 7.18 8.55 9.21 2.79 3.57 3.91 11.86 0.81 0.00 10.45 7.25 6.67 8.84 6.56 11.59 7.19 5.81 5.84 12.24 7 E1_Ab KnownBoundary 1 54.01 34.07 39.15 34.59 31.75 57.86 54.59 16.63 25.38 39.33 76.60 0.00 0.00 18.95 55.75 75.62 61.24 64.92 121.79 55.10 32.19 60.56 130.26 8 ER1b ExonRegion 1 34.85 42.83 70.23 42.13 33.98 54.22 52.58 55.79 51.15 106.77 119.46 15.18 2.89 63.06 96.55 92.21 133.62 72.18 102.46 82.04 58.74 35.79 57.03 9 E1a_E2a KnownJunction 1 9.93 22.69 107.30 66.39 19.61 15.79 15.99 75.78 86.72 150.67 117.08 11.25 6.01 66.40 116.20 116.81 160.54 87.96 105.70 116.78 40.22 45.37 68.55 10 E2_Aa NovelBoundary 0 11.34 3.35 12.12 8.42 27.67 0.00 39.30 12.03 6.92 11.74 11.63 6.30 6.82 12.71 4.45 0.00 13.65 8.83 37.08 18.66 5.99 0.00 12.21 11 ER2a ExonRegion 0 69.00 107.38 203.31 116.31 85.62 97.07 113.52 139.84 154.51 235.95 237.30 122.92 53.94 185.24 195.94 167.38 195.28 109.43 174.61 160.71 74.63 127.49 86.34 12 E2a_E3a KnownJunction 0 61.86 149.05 217.29 133.92 65.11 51.50 101.80 121.91 138.02 253.44 192.05 197.01 34.74 206.84 247.11 93.65 158.49 89.71 128.76 151.42 75.99 107.53 86.39 13 E3_Aa NovelBoundary 0 0.00 3.35 39.50 3.73 7.81 0.00 2.12 22.67 11.08 6.58 2.26 0.00 0.00 0.00 0.00 7.43 4.77 9.62 20.89 0.00 2.72 0.00 7.26 14 ER3a ExonRegion 0 105.63 144.41 253.35 141.57 111.75 112.28 140.68 178.57 158.91 275.35 245.52 173.48 50.69 203.09 227.13 189.09 173.07 117.28 141.12 153.64 90.69 103.21 92.60 15 E3_Da NovelBoundary 0 3.04 24.01 23.48 12.75 11.88 13.23 0.00 11.17 15.19 10.85 12.11 6.30 5.84 19.90 0.00 3.67 13.00 6.22 20.89 5.56 15.26 11.63 10.84 16 E3a_E4a KnownJunction 0 132.17 212.99 332.90 180.30 116.04 144.75 162.12 210.83 172.31 368.30 262.28 140.75 26.95 163.28 188.76 209.26 222.81 143.43 96.57 194.12 78.52 77.64 91.51 17 I3_AR1 ActiveIntronRegion 0 19.49 17.37 30.04 10.69 20.25 4.22 16.99 16.95 13.32 18.55 15.90 7.88 6.63 14.63 11.44 7.82 11.95 7.86 9.43 18.20 8.69 6.17 8.70 18 E4_Aa NovelBoundary 0 47.86 24.34 43.76 26.74 34.89 15.39 20.23 40.58 26.48 35.51 33.96 0.00 13.64 27.19 16.81 18.80 11.87 18.36 12.33 16.62 23.91 32.76 15.54 19 ER4a ExonRegion 0 112.10 157.90 421.73 194.61 155.78 148.65 158.93 209.44 174.78 314.93 270.82 173.62 60.80 230.04 296.67 233.16 216.57 128.89 189.93 189.89 89.93 118.03 123.62 20 E4_Da NovelBoundary 0 56.97 15.46 31.93 35.63 65.62 2.44 41.38 62.64 38.28 54.66 44.75 18.76 13.15 28.96 19.28 16.83 12.72 13.02 22.12 19.24 28.79 29.82 19.80 21 E4a_E5a KnownJunction 0 13.93 3.35 4.76 5.86 12.82 5.11 8.13 14.99 22.42 18.08 25.59 5.55 0.00 11.95 8.90 3.50 20.01 4.77 12.99 6.20 11.12 2.76 3.50 22 E4a_E6a KnownJunction 0 87.87 118.53 454.03 175.80 161.88 124.98 177.58 196.25 123.32 281.06 283.91 99.78 31.98 163.05 240.56 236.26 204.86 100.69 228.52 184.53 83.65 118.24 96.37 23 I4 Intron 0 22.92 15.93 16.65 10.42 22.11 17.50 19.62 10.66 14.42 19.97 24.78 11.90 11.16 15.94 19.43 21.59 9.88 5.36 12.71 13.94 15.08 13.06 15.90 24 I4_AR1 ActiveIntronRegion 1 22.98 15.98 16.70 10.44 22.17 17.54 19.66 10.69 14.46 20.02 24.83 11.93 11.19 15.98 19.48 21.65 9.91 5.38 12.74 13.98 15.11 13.10 15.94 25 E5_Aa NovelBoundary 0 41.86 38.81 42.96 24.74 7.56 15.62 14.09 17.42 37.30 53.29 21.79 11.70 11.69 47.44 36.22 11.36 17.02 20.56 19.67 20.39 16.99 34.72 33.46 26 ER5a ExonRegion 0 19.61 7.31 19.87 15.33 16.08 9.87 13.08 14.86 24.77 24.46 36.97 17.00 2.15 25.42 34.63 15.49 32.97 4.17 10.54 18.15 18.15 12.26 11.00 27 E5_Da NovelBoundary 0 35.86 16.51 40.33 22.44 11.97 25.50 21.99 17.54 29.51 28.21 13.37 12.45 6.49 21.48 28.56 11.88 8.42 7.71 17.79 18.41 18.53 20.39 32.86 28 E5a_E6a KnownJunction 0 7.11 3.09 2.72 9.52 8.23 11.58 5.08 15.28 20.02 18.53 34.22 12.60 0.00 30.96 13.35 16.15 27.49 8.62 21.08 6.39 20.14 2.94 19.72 29 I5 Intron 0 33.98 16.99 50.41 29.22 35.38 18.78 25.01 23.20 24.07 29.55 30.61 17.03 14.91 19.00 21.44 17.92 14.87 8.34 23.60 17.47 12.80 22.70 14.51 30 I5_AR1 ActiveIntronRegion 1 38.08 17.04 38.77 27.76 33.88 16.84 24.00 19.65 17.72 26.50 24.45 10.07 12.70 20.11 20.06 15.13 12.36 5.66 14.44 16.25 11.02 20.37 15.72 31 I5_SR1 SilentIntronRegion 0 30.53 17.28 62.95 31.19 37.55 21.10 26.51 27.18 30.86 33.17 37.34 24.19 17.41 18.27 23.24 21.07 17.67 11.17 33.21 19.03 14.78 25.46 13.59 32 E6_Aa NovelBoundary 0 48.45 18.22 57.12 27.64 24.02 10.11 22.26 14.38 40.45 31.27 29.17 6.90 7.30 16.95 17.80 28.11 0.00 22.30 20.24 23.84 3.15 13.04 20.66 33 ER6a ExonRegion 0 107.71 110.35 351.02 154.60 83.64 92.49 103.95 167.34 152.23 268.71 224.11 78.96 28.51 193.06 267.83 154.98 163.07 94.58 128.35 151.75 88.80 77.35 94.92 34 E6_Da NovelBoundary 0 11.34 5.79 30.81 11.95 4.24 0.00 5.74 10.97 4.14 3.44 6.84 0.00 0.00 0.00 0.00 0.00 4.39 7.05 8.85 0.00 0.00 2.94 3.59 35 E6a_E7a KnownJunction 0 176.77 203.32 338.40 162.55 98.56 109.03 133.99 155.88 165.28 257.85 271.49 123.04 45.94 191.07 284.20 114.76 188.97 99.94 243.68 207.73 94.70 87.14 111.23 36 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I6_AR1 ActiveIntronRegion 0 23.75 2.77 22.25 4.01 13.06 2.41 13.80 6.55 10.43 10.68 8.84 2.67 0.00 5.34 8.70 2.36 9.90 2.68 1.15 6.81 4.13 2.88 6.35 38 E7_Aa NovelBoundary 0 33.93 12.70 41.78 6.83 0.00 5.00 15.55 11.21 14.87 12.84 7.79 6.00 0.00 0.00 4.45 0.00 4.30 4.56 17.51 3.26 3.15 6.00 3.84 39 ER7a ExonRegion 0 116.84 126.00 259.96 121.64 81.30 79.24 106.20 158.01 157.48 235.31 222.12 64.03 30.56 182.74 286.84 160.10 147.87 107.66 122.76 153.07 94.79 79.58 69.84 40 E7_Da KnownBoundary 0 119.95 78.93 244.76 76.85 56.03 39.58 81.17 55.08 90.10 169.53 180.73 73.52 32.95 150.63 211.26 165.17 157.64 72.54 114.36 88.91 65.98 65.21 59.67 41 E7a_E8b KnownJunction 0 0.00 65.78 3.90 23.44 19.19 36.00 11.26 75.99 58.48 94.02 2.68 6.30 0.00 2.41 0.00 4.36 0.00 24.46 4.24 62.64 4.82 3.06 0.00 42 ER7b ExonRegion 0 58.98 35.79 152.20 61.90 43.06 27.05 44.65 57.20 72.09 121.89 96.93 23.95 17.92 89.90 149.23 72.83 68.87 39.65 72.61 53.78 37.92 56.46 46.39 43 E7_Db NovelBoundary 0 21.71 33.81 54.94 56.07 54.41 45.37 48.58 45.43 40.86 59.36 4.74 0.00 0.00 3.00 4.45 0.00 0.00 6.34 42.26 33.56 3.15 0.00 3.59 44 E7_Dc NovelBoundary 0 21.34 34.86 29.74 26.34 61.55 38.50 48.23 20.74 24.25 40.19 5.11 18.46 0.00 11.42 4.45 12.48 4.77 11.73 22.78 14.89 2.90 21.25 16.99 45 ER7c ExonRegion 0 2.38 3.56 7.35 5.96 13.04 4.36 2.98 2.81 8.03 7.45 3.62 2.71 1.76 3.65 3.26 1.11 3.71 1.62 21.50 3.19 0.00 0.26 2.94 46 I7 Intron 0 9.16 31.39 38.28 37.18 43.26 27.54 31.42 49.17 45.11 66.32 4.13 8.75 1.58 6.30 6.55 8.68 6.71 18.25 25.58 31.07 2.99 4.89 13.63 47 I7_AR1 ActiveIntronRegion 0 8.12 14.83 30.44 36.21 34.37 28.82 25.15 45.40 39.41 62.50 6.33 6.55 1.48 5.92 11.50 14.17 3.09 15.98 33.79 27.96 4.53 2.95 15.55 48 I7_SR1 SilentIntronRegion 0 7.20 24.66 34.17 33.24 39.25 24.25 25.86 41.42 31.53 40.24 3.68 10.63 0.00 6.91 4.95 4.81 5.05 11.89 22.02 22.43 0.44 2.04 11.32 49 I7_AR2 ActiveIntronRegion 0 10.52 42.34 43.95 39.44 49.39 28.41 36.90 54.42 53.73 79.35 3.28 9.06 2.30 6.25 4.85 7.68 9.19 22.08 23.21 36.31 3.32 7.04 13.72 50 ER8a ExonRegion 0 0.00 18.30 3.68 6.81 5.35 10.39 3.53 21.32 17.29 29.82 1.29 1.44 1.56 0.54 0.00 1.98 1.10 8.62 2.12 19.15 2.20 0.69 0.00 51 ER8b ExonRegion 0 3.65 79.70 26.89 38.05 33.52 39.58 24.79 105.77 81.35 148.84 4.51 1.92 2.08 3.74 2.74 5.20 6.05 47.22 14.78 55.61 2.88 2.89 3.92 52 E8_Da KnownBoundary 0 17.63 133.40 60.08 77.28 77.76 61.16 45.27 163.80 126.16 228.06 4.84 0.00 6.82 7.24 9.64 3.85 9.44 71.67 27.39 64.88 5.93 5.76 8.02 53 ER8c ExonRegion 0 14.98 92.66 60.04 89.37 106.89 124.60 58.54 153.81 109.26 186.43 8.51 12.81 7.48 9.69 10.38 10.94 8.50 38.80 39.16 91.89 6.98 10.30 17.22