Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TCAM1 Gene 0 3.28 8.42 5.12 7.18 9.54 128.91 33.77 9.26 22.76 5.92 0.53 1.26 1.30 0.87 1.70 2.82 2.37 3.99 3.71 2.97 1.20 0.84 2.79 2 463377 Transcript 0 0.00 0.52 0.22 1.09 0.53 8.00 0.54 0.08 0.36 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 3 469014 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 482005 Transcript 0 0.00 0.29 0.00 0.03 0.00 7.21 0.06 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 466125 Transcript 0 0.00 0.00 2.19 1.30 3.14 10.85 0.00 0.00 8.51 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 6 478379 Transcript 0 18.58 19.12 12.51 16.27 24.95 99.88 43.78 16.14 23.60 12.49 2.10 7.01 5.94 5.01 7.71 20.01 13.16 24.34 15.12 15.08 6.95 4.11 14.38 7 485295 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 476374 Transcript 0 0.00 0.00 0.00 0.00 0.00 40.26 8.44 4.23 12.99 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 7.15 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 1.57 0.67 0.00 1.58 24.01 1.62 0.24 1.07 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.97 3.43 4.06 3.74 2.15 159.79 20.34 2.32 7.15 3.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.96 0.00 11 E1a_E2b KnownJunction 0 0.00 0.00 1.66 0.00 0.00 17.49 0.00 0.00 4.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I1 Intron 0 0.06 1.99 1.36 0.66 1.67 29.28 3.46 2.37 5.08 0.66 0.11 0.21 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.06 0.00 13 I1_SR1 SilentIntronRegion 0 0.00 0.82 0.95 0.10 0.82 26.54 2.44 1.46 4.98 0.75 0.31 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 14 I1_AR1 ActiveIntronRegion 0 0.00 3.55 3.40 2.39 1.88 55.64 7.01 6.17 11.86 2.08 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 I1_AR3 ActiveIntronRegion 0 0.00 6.54 2.36 0.87 5.18 38.58 6.27 1.66 3.17 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.00 0.58 0.00 0.06 0.00 11.53 0.13 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2_Ac KnownBoundary 0 0.00 3.35 0.00 1.86 0.00 35.43 3.53 2.22 4.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2b ExonRegion 0 0.00 2.03 0.00 1.36 0.00 38.13 1.10 1.73 6.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2c ExonRegion 0 0.00 0.84 0.00 2.30 0.00 38.26 2.21 1.73 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 20 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E3d KnownJunction 0 0.00 0.00 2.19 1.30 3.14 10.85 0.00 0.00 8.51 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 22 E2a_E3e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2a_E7a KnownJunction 0 0.00 0.00 0.00 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 0.00 2.61 1.05 0.90 4.26 47.53 9.90 4.79 5.94 2.04 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.33 0.00 0.00 0.19 0.09 0.26 25 I2_AR1 ActiveIntronRegion 0 0.00 5.03 0.49 1.97 3.21 65.79 12.12 7.54 6.94 2.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.16 26 I2_SR1 SilentIntronRegion 0 0.00 1.73 1.25 0.51 4.65 40.96 9.10 3.79 5.59 1.84 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.33 0.00 0.00 0.27 0.13 0.30 27 E3_Aa NovelBoundary 0 11.34 10.06 6.83 11.95 11.97 47.59 16.38 15.24 17.16 7.41 0.00 0.00 7.47 0.00 11.62 12.22 0.00 2.57 9.04 0.00 5.87 0.00 0.00 28 ER3a ExonRegion 0 32.37 25.48 19.41 22.99 35.29 38.22 38.75 20.89 20.22 19.33 3.13 11.85 9.38 8.62 12.13 36.04 22.40 45.99 24.45 24.79 12.42 6.75 23.75 29 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 41.11 6.09 0.00 7.35 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E3_Ac KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 83.42 10.69 2.55 5.06 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER3b ExonRegion 0 1.06 0.25 1.23 0.17 2.34 76.90 9.10 3.46 7.26 3.44 0.00 0.00 0.00 0.71 0.00 0.00 2.06 0.23 0.00 0.80 0.28 0.00 0.18 32 ER3c ExonRegion 0 0.00 1.60 1.67 2.29 2.46 98.21 9.58 5.34 10.23 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 33 E3_Ad KnownBoundary 0 0.00 3.35 3.55 3.70 7.47 50.88 8.04 4.11 11.60 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 34 ER3d ExonRegion 0 0.00 1.18 2.09 1.45 1.76 67.74 9.44 3.95 13.18 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 35 E3_Ae KnownBoundary 0 0.00 0.00 5.14 0.00 4.33 111.70 3.80 4.39 10.39 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3e ExonRegion 0 0.00 0.00 4.29 0.00 1.97 63.60 2.40 3.50 14.24 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E3_Da NovelBoundary 0 3.11 3.35 0.00 0.00 3.57 50.26 3.49 2.55 5.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 38 E3a_E4a KnownJunction 0 0.00 0.00 2.93 0.00 3.57 74.56 4.50 2.55 14.53 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 I3 Intron 0 0.15 1.53 1.50 1.11 3.12 39.35 4.81 4.06 5.93 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.66 0.00 0.30 0.00 0.20 40 I3_SR1 SilentIntronRegion 0 0.15 1.54 1.51 1.12 3.13 39.45 4.82 4.07 5.95 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.66 0.00 0.30 0.00 0.20 41 E4_Aa NovelBoundary 0 6.89 3.22 5.12 1.80 12.56 88.13 21.37 11.58 15.57 4.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 42 ER4a ExonRegion 0 0.70 6.32 5.08 2.25 1.23 95.46 23.54 7.06 26.79 8.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.73 0.00 0.00 43 E4_Da KnownBoundary 0 0.00 8.81 9.40 1.96 4.33 191.03 79.93 12.28 24.97 12.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 44 ER4b ExonRegion 0 0.00 3.75 11.39 4.22 10.81 161.91 39.88 12.01 35.69 6.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 45 E4_Db KnownBoundary 0 0.00 2.57 9.96 5.96 17.40 136.23 41.56 8.67 41.75 7.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 46 ER4c ExonRegion 0 1.54 1.60 5.65 4.89 6.54 117.10 16.00 3.06 21.99 7.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 47 E4c_E5a KnownJunction 0 0.00 0.00 1.71 3.30 4.16 59.57 7.64 1.73 11.98 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 48 I4 Intron 0 0.43 1.67 1.12 1.66 1.10 33.81 13.02 4.75 5.65 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.65 0.00 0.00 0.00 0.00 49 I4_AR1 ActiveIntronRegion 0 0.44 1.68 1.13 1.68 1.10 34.08 13.12 4.79 5.70 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.66 0.00 0.00 0.00 0.00 50 ER5a ExonRegion 0 0.15 5.03 3.63 7.26 4.43 141.30 25.65 10.63 25.53 9.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 3.33 0.00 0.00 0.00 0.00 51 E5_Ab KnownBoundary 0 7.26 9.87 8.75 7.49 15.03 198.52 55.47 10.31 40.54 11.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 4.80 0.00 0.00 0.00 0.00 52 ER5b ExonRegion 0 0.55 6.52 2.02 4.14 4.33 108.18 27.89 7.96 19.72 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 4.94 0.00 1.05 0.00 0.00 53 E5_Da NovelBoundary 0 0.00 0.00 7.66 2.70 3.14 98.64 18.59 9.08 22.66 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 54 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 40.26 8.44 4.23 12.99 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 7.15 0.00 0.00 0.00 0.00 56 I5 Intron 0 0.28 5.84 3.33 4.77 3.84 61.23 23.31 5.71 15.60 4.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.83 0.00 0.29 0.00 0.00 57 I5_AR1 ActiveIntronRegion 0 0.28 5.87 3.35 4.79 3.86 61.55 23.43 5.74 15.69 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.84 0.00 0.29 0.00 0.00 58 E6_Aa NovelBoundary 0 0.00 11.77 0.00 3.10 4.24 38.78 32.42 4.35 10.94 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 4.33 0.00 0.00 0.00 0.00 59 ER6a ExonRegion 0 0.40 4.60 3.14 3.64 2.56 73.70 27.44 2.95 9.59 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.61 0.00 0.42 0.00 0.00 60 E6a_E7a KnownJunction 0 0.00 0.00 0.00 3.03 0.00 30.89 14.49 0.00 9.09 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 I6 Intron 0 0.34 1.46 1.89 1.78 3.41 39.02 10.13 1.64 2.64 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.25 0.00 0.18 0.00 0.00 62 I6_AR1 ActiveIntronRegion 0 0.00 0.93 0.00 3.73 2.46 48.29 12.21 0.00 2.55 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 63 I6_SR1 SilentIntronRegion 0 0.41 1.57 2.30 1.38 3.63 37.21 9.73 1.99 2.67 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.31 0.00 0.00 0.00 0.00 64 E7_Aa NovelBoundary 0 0.00 0.00 1.24 4.76 0.00 93.18 25.00 4.27 14.93 4.54 0.00 0.00 0.00 2.47 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 65 ER7a ExonRegion 0 0.00 6.49 5.30 6.03 3.41 121.72 22.80 9.08 26.01 4.37 0.00 0.00 0.00 0.28 0.00 0.00 0.00 4.54 0.18 0.00 1.22 0.00 0.00 66 E7_Da NovelBoundary 0 0.00 0.00 2.25 0.00 0.00 63.15 0.00 10.51 6.80 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E7a_E8a KnownJunction 0 0.00 3.35 2.19 0.00 0.00 30.49 10.69 0.00 9.95 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 68 E7_Db NovelBoundary 0 0.00 0.00 1.24 0.00 0.00 52.07 3.75 8.58 5.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 I7 Intron 0 0.00 7.56 3.40 1.62 7.11 93.05 17.94 4.79 13.20 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.59 0.00 0.00 71 I7_SR1 SilentIntronRegion 0 0.00 7.64 3.43 1.64 7.18 94.00 18.12 4.84 13.33 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.59 0.00 0.00 72 E8_Aa NovelBoundary 0 0.00 15.39 1.69 7.39 3.99 312.60 64.96 9.82 29.05 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 73 ER8a ExonRegion 0 1.67 6.91 4.02 8.30 11.67 158.84 37.48 12.74 29.53 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.82 0.61 0.00 0.22 0.00 0.00 74 E8_Da KnownBoundary 0 0.00 6.38 6.92 15.18 26.49 210.84 43.46 12.08 36.78 9.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 75 ER8b ExonRegion 0 1.24 4.72 4.20 6.66 12.83 139.62 36.22 9.24 30.49 6.59 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.11 2.34 0.00 0.00 0.00 0.00 76 E8_Db KnownBoundary 0 0.00 9.21 1.24 6.16 7.05 142.65 16.47 23.58 27.37 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 ER8c ExonRegion 0 4.79 12.76 5.62 9.56 14.62 161.54 48.81 11.38 26.99 5.65 1.08 2.17 2.49 1.39 3.28 3.97 3.92 2.69 5.80 5.37 1.47 1.47 5.02