Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C17orf67 Gene 0 12.31 6.45 10.50 12.75 7.90 16.77 5.17 9.60 13.56 11.23 10.08 6.38 7.64 18.26 14.13 13.72 12.82 6.48 14.21 9.59 7.19 11.47 12.58 2 487705 Transcript 0 0.19 1.10 0.98 1.81 1.20 0.16 1.42 0.46 1.00 0.77 0.69 1.30 5.02 0.48 1.43 0.83 0.30 0.58 1.43 3.05 0.00 0.55 0.53 3 397861 Transcript 0 4.43 3.26 6.03 6.45 4.37 8.06 2.45 4.44 6.01 6.92 7.97 4.14 4.11 12.48 9.39 8.03 8.20 5.37 11.32 5.61 4.33 4.90 6.70 4 397862 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.39 2.20 1.97 3.62 2.39 0.33 2.84 0.92 2.00 1.53 1.38 2.60 10.04 0.95 2.86 1.67 0.59 1.15 2.85 6.09 0.00 1.10 1.05 6 E1_Da NovelBoundary 0 0.00 2.57 3.10 14.02 0.00 0.00 1.81 4.27 7.96 3.04 2.68 12.60 20.29 0.00 10.14 4.36 0.00 2.57 7.15 20.01 0.00 0.00 0.00 7 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 Ix_AR1 ActiveIntronRegion 0 1.72 4.62 9.58 4.47 3.51 0.58 5.06 6.00 2.84 3.77 12.10 11.57 9.54 7.55 6.42 8.20 5.26 1.21 4.55 7.59 1.00 2.64 1.65 9 E2_Aa NovelBoundary 1 0.00 2.89 7.51 4.66 0.00 20.33 6.67 7.56 26.71 5.21 80.97 6.30 41.56 64.87 13.35 52.12 53.86 12.60 79.81 8.69 7.97 4.71 37.13 10 ER2a ExonRegion 0 0.77 1.51 4.70 2.24 0.49 9.05 1.00 6.17 8.44 8.78 24.75 3.17 10.00 32.46 12.89 24.66 28.94 9.71 26.77 6.26 11.12 4.19 14.20 11 E2_Da NovelBoundary 0 0.00 2.89 3.93 1.86 0.00 7.89 0.00 2.26 5.47 4.41 9.69 0.00 0.00 7.42 4.45 21.36 8.60 28.35 48.28 8.44 2.72 13.47 11.18 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 4.84 0.00 0.00 2.30 10.63 3.76 0.00 8.71 9.22 0.00 3.15 0.00 7.94 13 I2 Intron 0 0.79 1.51 4.40 2.26 0.99 10.89 1.96 3.34 3.07 4.12 10.40 1.23 3.58 14.32 19.27 13.77 13.47 6.30 12.41 8.29 5.73 3.09 5.45 14 I2_AR1 ActiveIntronRegion 0 0.80 1.54 4.50 2.31 1.01 11.12 2.01 3.42 3.14 4.21 10.60 1.26 3.66 14.62 19.69 14.05 13.77 6.44 12.68 8.45 5.86 3.16 5.57 15 E3_Aa NovelBoundary 0 0.00 6.58 27.20 14.95 6.79 20.22 6.71 10.68 13.95 31.16 24.85 0.00 0.00 14.54 18.05 41.44 27.96 37.23 18.73 27.55 32.56 3.00 11.78 16 ER3a ExonRegion 0 8.72 20.24 37.03 39.08 11.44 36.23 14.53 24.18 30.99 33.72 31.44 18.69 21.23 51.57 46.11 34.27 33.31 22.65 40.89 36.55 17.02 19.39 23.08 17 E3_Da NovelBoundary 0 36.60 35.91 30.34 51.41 7.89 14.76 24.33 14.58 36.40 38.12 0.00 36.16 55.52 43.26 19.78 20.08 21.22 12.56 22.02 36.05 0.00 22.17 11.78 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 8.32 0.00 0.00 0.00 0.00 2.95 0.00 6.30 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 19 I3 Intron 0 18.80 32.00 27.24 34.29 12.52 33.66 14.62 22.79 26.19 22.59 10.65 16.27 13.08 20.73 17.18 20.03 15.98 15.82 39.02 21.30 9.30 14.35 19.98 20 I3_SR1 SilentIntronRegion 0 45.88 79.27 75.50 79.17 24.86 72.49 28.70 52.08 69.06 57.60 32.39 40.68 30.50 46.88 39.73 61.17 43.29 47.36 135.18 67.42 34.52 26.94 64.72 21 I3_SR2 SilentIntronRegion 0 26.17 54.17 3.12 12.76 45.97 116.36 41.40 0.00 4.04 5.32 17.57 14.56 27.29 15.36 21.63 71.60 32.41 11.09 141.89 67.12 25.24 15.34 36.04 22 I3_AR4 ActiveIntronRegion 0 13.49 28.16 34.09 39.49 13.70 33.55 16.75 21.14 28.20 23.31 9.71 20.63 22.91 26.94 21.65 20.22 19.00 16.41 54.13 24.51 9.09 20.54 16.16 23 I3_SR3 SilentIntronRegion 0 12.06 25.76 34.12 52.62 16.11 31.68 20.39 36.89 37.16 31.11 13.99 13.17 6.57 26.34 18.61 31.58 15.78 13.19 59.96 14.53 1.06 30.52 26.78 24 I3_AR5 ActiveIntronRegion 0 34.04 60.59 44.09 60.50 31.46 75.65 32.98 42.22 42.12 41.37 16.26 37.15 26.00 33.93 23.68 26.87 22.55 23.33 47.33 33.55 11.52 19.63 20.85 25 I3_SR4 SilentIntronRegion 0 18.92 27.30 24.45 27.62 7.28 28.22 10.82 18.94 25.27 18.09 11.19 6.28 4.46 19.80 18.83 16.79 15.70 15.05 31.38 21.70 9.71 13.64 21.78 26 I3_AR6 ActiveIntronRegion 0 14.24 13.23 23.85 26.85 0.78 15.42 6.53 21.06 20.53 13.97 6.68 6.94 11.22 8.70 20.90 17.48 17.38 19.46 20.72 9.64 6.27 11.71 21.11 27 I3_AR7 ActiveIntronRegion 0 9.12 14.17 9.13 10.84 3.45 6.12 3.09 10.13 5.54 6.81 2.58 8.23 7.63 14.17 5.59 4.95 2.20 4.59 5.31 4.98 1.47 5.58 10.71 28 E4_Aa NovelBoundary 0 17.26 12.10 5.85 19.18 3.90 27.43 10.64 14.46 10.62 5.26 2.26 0.00 0.00 9.54 0.00 3.50 0.00 0.00 9.22 4.92 5.87 11.08 8.45 29 ER4a ExonRegion 0 7.20 5.64 1.92 9.35 4.87 17.70 4.30 8.33 11.71 7.50 2.05 7.71 3.17 6.91 1.48 9.52 6.31 2.72 10.11 2.70 4.20 6.85 6.86 30 E4_Da NovelBoundary 0 6.45 5.39 14.69 7.99 0.00 24.08 21.90 16.84 13.40 10.18 4.21 7.65 5.68 3.00 0.00 10.25 0.00 0.00 8.28 8.56 0.00 5.82 7.94 31 E4a_E5a KnownJunction 0 3.78 0.00 0.00 6.29 0.00 0.00 1.85 4.39 3.36 0.00 0.00 0.00 0.00 4.71 0.00 3.50 8.04 0.00 0.00 0.00 0.00 3.12 0.00 32 E5_Aa NovelBoundary 0 10.30 6.05 18.10 12.39 4.33 22.43 0.00 13.64 6.45 3.98 0.00 11.70 6.82 4.59 0.00 8.20 4.68 4.19 3.48 0.00 0.00 0.00 3.76 33 ER5a ExonRegion 0 20.87 6.77 4.19 11.59 6.45 13.81 13.12 7.01 9.52 7.88 0.92 0.00 4.08 14.78 10.79 6.69 6.23 5.25 5.09 7.10 3.15 13.10 11.14 34 E5_Da NovelBoundary 0 7.04 9.67 4.38 11.55 0.00 14.76 9.98 7.06 7.90 8.97 0.00 6.30 0.00 7.24 0.00 8.63 4.21 8.29 24.28 0.00 2.90 2.69 7.60 35 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5b ExonRegion 0 2.12 0.00 1.23 3.75 0.00 1.83 0.17 0.00 0.31 2.72 0.00 0.00 0.00 2.44 2.54 0.00 0.00 0.00 9.56 0.27 0.28 1.56 0.00 37 I5 Intron 0 11.10 7.54 2.81 6.59 5.02 8.51 2.71 4.51 6.75 3.33 1.25 3.79 2.51 5.55 2.91 5.03 4.42 2.55 4.18 1.89 3.26 5.14 7.37 38 I5_SR1 SilentIntronRegion 0 11.11 7.55 2.81 6.59 5.02 8.52 2.71 4.51 6.75 3.33 1.25 3.79 2.51 5.55 2.92 5.03 4.43 2.55 4.18 1.89 3.26 5.15 7.38 39 E6_Aa NovelBoundary 0 51.56 5.99 8.81 19.74 12.99 15.05 4.50 10.47 12.01 6.23 0.00 12.60 0.00 4.83 4.45 8.72 8.23 2.24 4.33 0.00 0.00 14.57 14.00 40 ER6a ExonRegion 0 23.82 4.35 5.31 6.50 14.74 17.35 3.87 3.60 8.31 7.14 2.73 4.97 1.61 8.92 2.93 1.58 3.33 1.88 4.15 1.76 3.05 11.37 8.38 41 E6_Ab KnownBoundary 0 16.15 8.55 5.62 7.72 16.89 18.23 4.11 3.53 7.78 8.76 6.74 17.41 0.00 4.71 0.00 3.42 4.77 2.49 9.60 0.00 7.72 21.43 26.80 42 ER6b ExonRegion 0 25.33 3.35 8.02 8.13 10.72 16.49 1.51 3.59 11.79 10.54 2.86 5.99 0.00 9.24 5.48 5.16 8.81 2.50 3.71 0.82 7.24 12.23 12.89 43 E6a_E7a KnownJunction 0 48.68 5.00 3.61 5.96 25.38 13.86 0.00 3.37 8.74 8.38 4.58 0.00 0.00 19.37 9.52 3.50 8.23 0.00 0.00 0.00 5.25 9.12 28.00 44 ER7a ExonRegion 0 34.35 10.87 10.28 4.94 8.37 21.90 0.67 8.73 16.63 9.35 3.27 5.40 1.95 8.75 7.96 5.21 6.01 0.00 2.59 0.63 10.25 15.06 19.28 45 E7a_E8a KnownJunction 0 28.00 2.83 3.90 3.50 7.30 29.59 0.00 4.48 12.50 2.77 5.21 0.00 0.00 0.00 4.45 7.69 0.00 0.00 4.80 3.26 5.68 11.08 14.77 46 ER8a ExonRegion 0 22.77 0.00 3.76 9.01 16.11 16.56 1.45 7.95 15.70 6.07 0.34 0.00 1.44 7.78 6.16 13.62 1.25 0.00 3.63 1.12 6.10 15.92 10.76 47 E8a_E9a KnownJunction 0 15.48 0.00 3.40 10.42 35.65 7.78 1.68 4.68 15.42 7.17 0.00 0.00 0.00 6.89 15.20 7.18 0.00 0.00 13.55 0.00 5.50 29.27 20.32 48 E9_Aa NovelBoundary 0 9.33 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 4.45 15.89 4.02 0.00 0.00 0.00 0.00 0.00 0.00 49 ER9a ExonRegion 0 16.45 1.42 3.60 7.13 9.33 11.94 2.16 8.39 9.54 2.71 0.44 2.07 1.54 4.92 7.43 6.01 4.22 0.00 3.08 0.74 2.93 14.71 12.24 50 ER9b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00