Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GRB2 Gene 0 130.87 262.39 169.56 115.07 248.44 230.13 206.54 237.65 303.30 285.36 270.72 219.39 215.46 366.67 401.70 284.44 328.36 149.18 186.66 187.22 144.10 147.22 98.53 2 316615 Transcript 1 13.52 15.23 0.88 0.69 11.64 39.60 25.85 1.46 1.82 3.40 38.52 0.00 0.00 54.22 93.96 28.21 19.81 0.78 14.64 19.86 31.16 7.35 14.63 3 316804 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 392562 Transcript 0 2.51 0.08 1.73 0.88 1.16 0.00 1.35 1.02 2.10 0.88 0.23 0.12 0.76 0.88 3.03 2.34 4.03 0.43 1.76 0.34 0.88 0.33 0.70 5 392564 Transcript 0 13.44 208.10 30.08 18.32 130.12 368.59 158.54 53.41 86.95 85.90 7.62 0.48 0.56 4.19 5.31 3.00 11.98 95.62 102.63 104.89 42.64 18.56 5.81 6 392563 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 462266 Transcript 0 3.80 3.64 1.38 0.55 2.18 0.94 3.04 1.98 0.05 0.44 0.49 1.82 0.00 1.22 3.37 2.35 2.53 1.47 3.25 2.67 0.00 0.00 0.00 8 ER1a ExonRegion 0 13.52 15.23 0.88 0.69 11.64 39.60 25.85 1.46 1.82 3.40 38.52 0.00 0.00 54.22 93.96 28.21 19.81 0.78 14.64 19.86 31.16 7.35 14.63 9 E1_Ab KnownBoundary 1 94.02 54.46 19.34 13.72 69.44 122.77 107.14 20.21 27.63 53.72 150.25 0.00 0.00 156.04 228.82 150.30 106.03 59.53 83.01 57.91 76.54 39.37 66.07 10 ER1b ExonRegion 1 14.03 11.62 16.36 5.74 10.41 13.05 16.42 13.22 20.79 35.06 94.48 14.55 24.77 68.15 147.01 36.59 91.62 8.68 17.13 27.35 43.38 12.37 9.83 11 E1a_E3b KnownJunction 1 14.74 35.78 58.28 35.83 38.71 27.26 27.47 52.66 92.42 138.26 414.47 47.42 65.58 303.61 423.64 149.02 439.36 64.87 99.20 125.66 159.32 45.62 33.12 12 ER2a ExonRegion 0 5.01 0.16 3.46 1.76 2.32 0.00 2.71 2.03 4.21 1.75 0.46 0.24 1.52 1.76 6.06 4.69 8.06 0.87 3.52 0.67 1.75 0.66 1.39 13 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 10.52 68.94 8.93 9.62 15.11 164.34 33.30 11.99 32.00 26.62 2.16 0.00 0.00 7.18 9.15 0.00 8.98 66.24 38.97 52.54 59.80 46.41 44.56 15 ER3a ExonRegion 0 13.44 208.10 30.08 18.32 130.12 368.59 158.54 53.41 86.95 85.90 7.62 0.48 0.56 4.19 5.31 3.00 11.98 95.62 102.63 104.89 42.64 18.56 5.81 16 E3_Ab KnownBoundary 0 10.30 262.91 54.61 37.56 171.14 424.07 169.81 114.80 189.15 148.09 12.16 0.00 0.00 2.12 0.00 0.00 11.97 148.15 76.33 130.20 51.89 8.51 4.18 17 ER3b ExonRegion 1 49.40 426.29 242.36 159.09 248.30 344.38 226.70 307.27 400.59 417.56 419.58 76.06 116.09 674.16 1066.81 564.79 504.07 415.54 342.06 389.20 237.90 165.23 161.43 18 E3_Ac KnownBoundary 0 38.15 341.85 380.77 254.61 185.48 153.95 126.26 410.41 495.97 532.86 432.11 226.72 307.77 652.31 814.51 501.41 475.17 395.96 264.48 429.97 262.12 194.48 214.35 19 ER3c ExonRegion 0 100.42 565.61 410.00 247.01 250.17 285.60 246.94 522.90 692.62 645.34 648.20 346.07 459.09 719.55 895.77 490.68 680.36 466.02 409.36 587.05 318.99 251.91 176.87 20 E3a_E4a KnownJunction 0 272.49 818.60 602.49 414.17 493.72 659.56 562.19 838.40 952.85 924.29 874.33 498.76 883.22 981.70 1064.22 637.35 924.26 547.18 631.92 767.07 348.49 353.50 228.69 21 I3 Intron 0 27.82 12.02 13.57 13.47 27.08 6.27 31.79 19.80 15.48 19.23 2.73 22.50 29.72 2.27 20.58 22.24 18.89 3.53 7.46 17.05 1.37 1.38 6.46 22 I3_SR1 SilentIntronRegion 1 23.54 15.44 12.71 12.33 29.13 8.95 38.23 14.76 12.98 20.84 3.67 34.10 44.78 3.36 20.26 21.04 24.29 3.44 6.98 20.32 1.15 1.54 5.88 23 I3_AR2 ActiveIntronRegion 0 21.44 10.20 13.25 12.39 41.77 9.68 42.78 12.81 11.28 13.99 2.15 23.37 38.56 1.28 14.98 17.39 15.95 1.41 6.21 19.48 1.23 1.16 3.68 24 I3_SR2 SilentIntronRegion 0 27.37 8.19 14.99 15.42 36.34 5.39 42.43 21.39 12.10 22.22 2.77 32.06 39.70 2.65 22.77 28.53 12.87 2.16 10.49 23.25 1.94 1.25 8.15 25 I3_AR3 ActiveIntronRegion 1 15.52 15.03 17.50 26.27 49.50 9.17 44.21 13.92 12.08 27.21 1.40 28.62 49.51 5.14 26.27 49.04 2.20 3.70 10.79 32.27 0.37 0.00 11.75 26 I3_AR4 ActiveIntronRegion 0 31.52 16.50 21.60 21.40 37.29 8.01 37.35 21.53 17.94 21.69 3.05 21.08 38.20 3.25 32.75 25.61 20.32 1.82 8.12 20.69 1.04 1.50 7.56 27 I3_SR3 SilentIntronRegion 0 32.59 12.54 15.42 14.99 28.74 7.34 27.74 17.92 14.55 18.09 3.21 21.87 20.99 2.47 22.18 35.86 24.57 5.29 8.77 17.92 2.92 1.44 7.52 28 I3_AR5 ActiveIntronRegion 0 54.49 29.41 18.07 22.43 37.02 13.72 39.92 26.85 19.12 21.74 2.19 15.18 19.65 2.54 29.03 42.64 24.44 8.60 16.94 24.70 2.14 1.80 15.50 29 I3_AR7 ActiveIntronRegion 0 29.81 10.14 13.65 12.55 27.90 4.86 31.96 25.85 20.05 22.53 2.75 23.18 25.77 1.33 21.34 18.94 12.78 3.34 6.16 19.42 0.00 0.62 6.80 30 I3_SR5 SilentIntronRegion 1 49.97 14.15 18.79 19.99 32.59 6.38 49.03 39.18 25.89 31.35 3.27 33.40 45.19 2.61 23.94 23.93 24.45 5.30 8.23 20.94 1.20 2.28 8.76 31 I3 Intron 0 32.64 15.23 16.86 12.49 27.01 5.33 27.81 23.91 17.26 20.54 3.32 20.95 20.79 3.85 21.18 22.54 19.12 6.62 9.29 14.31 2.41 1.74 5.92 32 I3_SR1 SilentIntronRegion 0 32.42 15.50 19.54 14.27 30.86 3.83 35.97 25.15 18.19 21.66 3.79 18.39 36.61 3.06 26.17 32.12 26.31 5.53 12.05 21.29 2.35 1.58 7.57 33 I3_AR1 ActiveIntronRegion 0 27.00 6.87 11.88 9.86 30.03 5.47 31.86 13.33 8.05 10.20 1.60 11.05 30.71 2.26 18.57 11.71 12.70 4.09 1.78 7.96 0.73 1.10 6.59 34 I3_SR3 SilentIntronRegion 0 26.80 15.38 15.96 11.66 25.06 4.76 25.68 22.71 15.90 19.05 3.05 18.06 16.60 3.68 20.66 20.63 18.26 6.23 8.38 13.95 2.25 1.61 5.51 35 I3_AR2 ActiveIntronRegion 1 101.30 20.45 27.51 24.77 54.49 17.49 49.34 44.51 35.11 45.25 7.21 50.61 42.62 7.11 33.27 58.67 32.71 12.55 20.64 20.41 4.84 3.36 9.94 36 I3_AR3 ActiveIntronRegion 1 66.55 20.96 19.92 12.70 43.29 6.65 34.60 38.64 35.02 30.93 4.26 40.28 43.70 4.11 15.12 13.84 12.27 2.81 8.50 14.59 1.41 1.31 6.64 37 I3_SR5 SilentIntronRegion 0 35.81 12.80 14.24 10.73 29.30 4.48 26.20 24.86 19.67 22.38 4.24 23.58 21.80 4.75 22.39 23.84 21.51 10.29 11.02 10.02 3.95 2.21 8.00 38 I3_AR4 ActiveIntronRegion 0 40.89 9.19 16.52 18.70 37.14 6.16 16.42 28.62 18.03 19.73 0.00 20.78 4.88 3.05 14.27 21.64 21.26 17.29 19.11 24.68 4.58 0.00 10.22 39 I3_AR5 ActiveIntronRegion 0 34.31 6.10 12.19 19.01 33.94 3.19 16.44 29.38 18.14 24.51 0.00 24.15 5.43 8.21 16.03 19.55 17.72 13.32 10.56 17.58 3.25 0.00 7.26 40 I3_AR6 ActiveIntronRegion 0 37.05 9.49 16.62 15.66 24.81 5.73 28.69 22.59 19.58 25.91 4.63 19.77 12.97 6.38 12.73 24.87 15.98 11.87 13.10 18.83 3.32 4.60 3.42 41 I3_AR7 ActiveIntronRegion 0 44.47 18.22 25.59 17.05 25.27 7.87 31.46 28.40 20.21 25.28 3.73 34.02 27.81 4.58 23.21 16.88 17.53 7.39 10.89 14.26 2.65 2.52 5.06 42 ER4a ExonRegion 0 328.12 679.28 599.46 447.11 716.66 966.43 633.00 777.68 984.39 949.68 910.22 709.10 761.27 1254.72 1548.71 975.74 1009.80 581.10 589.00 719.99 439.77 466.64 283.39 43 E4a_E6a KnownJunction 0 436.67 723.23 593.06 417.26 840.58 1173.81 759.82 849.00 1124.67 1121.16 1035.42 671.77 658.72 1240.10 1333.09 1055.28 1019.17 491.72 598.32 632.01 491.13 489.50 296.38 44 E4a_E7a KnownJunction 0 0.00 0.00 13.07 0.00 0.00 8.69 3.62 6.65 9.03 10.50 7.26 6.30 0.00 12.13 13.97 4.36 0.00 4.68 0.00 2.62 2.72 0.00 0.00 45 I4_SR3 SilentIntronRegion 0 30.61 21.17 25.64 12.06 20.56 4.48 18.41 20.15 14.79 11.46 1.89 8.26 14.56 2.63 9.11 14.95 11.07 6.67 6.68 8.47 4.15 1.60 2.46 46 ER5a ExonRegion 0 7.60 7.28 2.76 1.09 4.36 1.87 6.08 3.96 0.10 0.87 0.99 3.64 0.00 2.44 6.73 4.70 5.05 2.94 6.50 5.34 0.00 0.00 0.00 47 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER6a ExonRegion 0 287.85 788.24 447.20 341.33 453.62 494.05 398.63 722.72 938.10 934.79 801.46 878.49 922.07 1189.92 1286.60 832.03 1001.19 462.52 488.09 613.94 464.12 432.39 274.44 49 E6a_E7a KnownJunction 0 232.04 950.29 495.19 271.43 582.26 615.04 472.28 606.91 892.32 921.79 1005.10 1100.01 1109.34 1055.69 1083.88 862.42 955.59 530.77 443.97 604.27 477.17 368.81 210.85 50 I6 Intron 0 29.16 21.58 20.89 13.48 35.02 10.99 20.13 21.80 19.83 18.14 5.33 15.71 17.68 12.53 27.28 22.36 19.16 8.92 11.52 9.46 5.35 3.12 3.49 51 I6_AR1 ActiveIntronRegion 0 30.63 20.98 23.49 14.18 38.95 16.23 23.30 31.09 26.42 27.75 4.75 13.99 25.22 16.64 37.39 22.81 19.17 10.29 12.23 12.97 6.08 3.48 3.46 52 I6_SR3 SilentIntronRegion 0 38.52 34.14 25.39 17.92 52.88 11.31 23.99 23.33 25.01 17.75 6.19 26.28 25.15 11.93 29.31 24.84 26.29 8.53 16.17 12.13 7.40 4.39 4.59 53 I6_SR4 SilentIntronRegion 0 26.98 14.14 19.76 10.59 20.16 6.03 16.89 20.89 14.58 13.21 4.11 4.82 9.11 11.96 21.86 22.98 15.94 10.30 8.61 6.99 2.97 2.41 2.84 54 ER7a ExonRegion 0 201.02 675.87 458.89 300.24 549.40 518.47 475.63 661.37 919.10 910.60 929.95 827.65 795.47 1149.95 1282.82 926.32 1123.03 568.93 569.60 519.36 473.02 404.26 284.19 55 E7a_E8a KnownJunction 0 376.14 509.78 627.65 344.18 514.69 465.98 429.70 746.40 990.33 1034.32 862.96 521.12 477.73 910.30 1410.10 559.43 1186.07 426.97 509.29 453.30 552.10 328.15 160.65 56 I7 Intron 0 56.68 22.87 39.21 13.76 33.18 16.76 28.35 48.23 36.12 41.40 18.41 16.57 21.12 23.01 37.54 45.02 34.39 19.90 19.96 23.94 9.57 3.33 6.19 57 I7_SR1 SilentIntronRegion 0 56.96 22.98 39.41 13.83 33.34 16.84 28.49 48.47 36.29 41.60 18.50 16.65 21.23 23.12 37.72 45.22 34.55 20.00 20.03 24.05 9.62 3.35 6.22 58 E8_Aa NovelBoundary 0 30.01 22.17 58.57 22.34 30.22 7.78 33.12 75.12 50.29 58.56 20.27 5.85 0.00 22.01 48.46 16.75 38.34 19.36 8.38 23.84 13.84 2.63 4.27 59 ER8a ExonRegion 0 433.68 627.18 512.05 320.10 480.98 546.51 447.57 708.20 924.82 865.44 818.72 651.68 741.09 1137.58 1331.92 888.31 972.79 509.48 596.07 516.51 465.23 380.90 282.30 60 E8_Da KnownBoundary 0 612.85 1298.91 435.97 331.23 1423.35 1180.51 1380.70 685.16 842.41 758.23 867.54 589.99 410.36 1264.06 1110.21 894.38 823.00 256.76 584.49 540.04 424.41 414.18 295.44 61 ER8b ExonRegion 0 143.87 242.20 144.33 99.90 282.37 215.29 219.88 204.23 249.71 225.71 209.13 180.28 154.54 288.59 271.72 227.19 263.42 86.55 149.30 138.33 108.78 138.73 88.21