Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STXBP4 Gene 0 6.16 25.62 10.93 22.78 21.31 25.37 49.44 18.39 33.82 29.66 9.78 20.24 20.25 17.41 11.86 10.97 11.64 10.51 12.00 33.16 13.13 16.57 12.80 2 461444 Transcript 0 1.14 5.06 1.77 0.21 3.22 4.02 8.91 0.24 0.82 1.02 1.73 0.00 2.35 0.40 1.36 0.30 1.17 0.26 1.40 1.29 2.03 1.66 2.13 3 299341 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 412943 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 434978 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.45 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 2.49 0.00 2.33 3.67 6 376352 Transcript 0 4.41 19.26 11.07 15.49 26.56 27.20 63.10 12.78 28.90 26.80 12.14 34.30 21.44 30.07 9.97 14.39 17.20 19.33 14.06 42.09 27.39 18.49 23.10 7 405898 Transcript 0 0.00 0.00 1.27 0.00 0.00 0.00 2.25 0.00 1.79 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 464340 Transcript 0 0.27 0.76 1.51 0.95 2.74 0.29 4.05 1.37 1.84 1.39 1.14 2.27 2.24 0.08 2.65 2.51 0.41 0.00 0.40 0.47 0.07 0.00 0.09 9 398391 Transcript 0 0.00 0.00 0.00 1.53 8.32 7.84 0.00 6.37 4.28 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 463234 Transcript 0 7.26 0.00 3.43 1.93 20.88 5.45 15.24 1.68 10.79 4.22 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 3.20 0.00 6.98 4.35 11 468837 Transcript 0 0.01 1.12 0.30 4.18 4.35 0.95 8.95 1.84 2.24 1.26 0.17 1.32 2.35 0.44 0.67 0.65 0.98 0.07 1.36 2.52 0.51 0.06 0.12 12 ER1a ExonRegion 0 2.28 10.12 0.38 0.42 6.45 8.04 11.85 0.49 1.55 2.00 3.47 0.00 4.69 0.79 1.04 0.61 0.00 0.52 0.33 0.87 4.07 3.31 2.56 13 E1_Ab KnownBoundary 0 6.96 13.29 0.00 0.00 20.54 16.69 8.44 0.00 3.18 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 2.84 0.00 4.35 14 E1_Ac KnownBoundary 0 3.70 34.40 1.54 1.73 0.00 19.59 63.33 3.74 1.65 12.57 12.00 0.00 0.00 9.36 4.45 14.27 0.00 2.11 4.14 8.69 10.63 17.15 3.59 15 ER1b ExonRegion 0 4.23 31.11 2.08 3.13 11.51 31.17 48.72 4.67 4.08 15.25 13.34 0.00 1.41 8.61 6.67 15.46 2.97 2.40 7.01 11.70 13.88 17.71 5.87 16 ER1c ExonRegion 0 6.23 40.31 5.91 7.38 19.83 53.72 78.43 8.74 12.35 22.74 17.96 0.00 1.66 18.15 11.26 30.77 14.95 7.50 15.36 28.29 14.65 25.49 10.19 17 E1a_E2a KnownJunction 0 37.12 51.31 18.60 22.51 118.76 130.72 337.01 40.50 51.19 56.95 31.80 6.00 8.28 55.92 34.74 79.98 64.98 33.91 60.61 112.49 14.95 47.82 67.18 18 E1a_E3a KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 2.25 0.00 1.79 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1d ExonRegion 0 14.82 48.81 8.58 9.99 41.03 63.57 144.75 19.59 24.70 30.58 27.70 0.00 4.69 27.61 18.37 47.55 29.71 19.09 31.85 42.55 19.10 42.36 30.35 20 ER1e ExonRegion 1 18.73 46.26 12.99 15.26 74.12 93.98 215.54 29.12 39.21 41.23 29.86 1.95 5.39 41.66 24.52 66.13 45.06 25.96 43.32 75.96 18.95 45.52 44.49 21 ER2a ExonRegion 0 12.35 16.97 10.27 18.15 50.63 44.60 115.46 25.35 38.76 37.24 13.93 9.55 7.28 16.82 7.96 20.80 18.66 16.51 18.66 44.19 7.94 20.43 16.98 22 E2a_E3a KnownJunction 0 0.00 11.18 5.38 6.53 8.57 2.16 20.40 12.32 21.30 33.87 13.95 6.00 12.66 7.89 8.90 0.00 3.74 4.02 0.00 23.71 8.71 5.33 4.35 23 ER3a ExonRegion 0 3.35 10.69 17.66 19.27 9.74 12.37 26.00 34.85 53.71 47.64 29.16 28.57 48.55 40.85 18.34 27.15 26.99 19.97 24.03 75.90 18.26 35.99 26.64 24 E3a_E4a KnownJunction 0 0.00 25.00 12.30 24.01 25.21 46.22 68.05 28.26 48.67 27.16 19.64 69.02 40.42 32.32 4.45 24.10 21.13 21.85 11.20 71.84 17.24 20.51 27.49 25 E3a_E6a KnownJunction 0 0.00 0.00 0.00 1.53 8.32 7.84 0.00 6.37 4.28 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 0 3.12 38.47 15.48 24.81 41.24 52.34 145.52 28.32 45.63 35.01 27.74 49.35 42.67 33.08 18.15 18.88 26.43 9.25 9.44 68.05 24.84 22.06 14.77 27 E4a_E5a KnownJunction 0 0.00 0.00 1.83 0.00 4.24 0.00 0.00 0.00 1.13 0.00 2.05 0.00 0.00 0.00 4.45 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E4a_E6a KnownJunction 0 18.15 47.69 8.40 13.85 26.23 10.56 61.65 38.08 56.80 45.42 33.01 23.11 20.29 36.26 19.41 34.44 24.59 8.62 4.80 67.43 31.63 25.17 19.63 29 ER4b ExonRegion 0 0.00 0.00 3.16 0.00 0.00 0.00 5.98 0.00 0.08 0.04 0.00 0.00 0.00 0.00 1.68 0.00 2.34 0.00 2.47 1.72 0.00 0.00 1.71 30 ER5a ExonRegion 0 0.53 1.53 1.19 1.91 1.24 0.57 8.11 2.74 2.55 2.78 0.22 4.53 4.48 0.17 0.86 0.67 0.83 0.00 0.80 0.93 0.14 0.00 0.18 31 ER6a ExonRegion 0 11.65 37.04 17.03 24.32 30.83 24.88 61.66 29.85 57.52 49.52 33.09 50.46 47.95 36.69 20.72 30.64 21.87 15.92 22.74 84.45 23.97 26.97 19.02 32 E6a_E7a KnownJunction 0 0.00 0.00 40.48 0.00 7.39 0.00 12.10 0.00 0.00 0.00 23.37 50.57 0.00 21.25 15.95 8.46 25.99 0.00 0.00 28.25 16.25 0.00 4.35 33 E6a_E7b KnownJunction 0 6.74 42.89 0.00 40.22 0.00 23.85 63.24 30.85 78.96 61.14 24.43 20.26 12.82 16.89 20.89 7.18 3.65 24.46 13.37 61.23 8.40 47.64 12.21 34 ER7a ExonRegion 0 3.63 6.68 36.41 4.28 14.53 6.29 20.81 3.70 10.59 9.18 23.75 37.73 13.40 22.51 16.58 11.46 20.75 5.28 2.28 40.43 13.22 6.55 9.23 35 ER7b ExonRegion 0 9.57 37.51 27.28 22.79 45.59 24.85 77.68 22.77 58.69 50.55 31.93 44.87 43.03 35.44 23.68 29.66 33.87 15.96 24.83 80.21 15.89 30.77 23.40 36 E7a_E8a KnownJunction 0 14.22 45.06 18.04 12.09 67.83 45.83 125.11 35.36 60.50 44.19 21.22 36.91 40.91 40.03 18.54 17.43 20.76 12.39 4.61 51.33 11.74 8.76 16.99 37 ER7c ExonRegion 0 7.90 31.91 14.80 11.27 60.92 43.38 99.20 27.79 51.92 45.83 21.34 45.79 28.86 35.23 19.75 14.52 33.26 17.77 9.07 42.55 11.27 11.70 11.97 38 ER8a ExonRegion 1 3.20 30.58 19.19 21.43 34.54 29.97 84.63 28.29 43.18 30.79 16.86 54.80 70.60 37.65 13.55 25.85 31.75 11.65 12.83 64.14 10.47 21.88 10.20 39 E8a_E9a KnownJunction 1 2.89 24.54 20.22 25.80 25.13 14.08 53.26 18.69 23.29 27.67 9.53 76.83 32.95 9.83 4.45 14.70 30.86 19.52 17.04 99.07 13.04 20.33 12.55 40 E8a_E10b KnownJunction 0 7.26 0.00 3.43 1.93 20.88 5.45 15.24 1.68 10.79 4.22 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 3.20 0.00 6.98 4.35 41 E9_Aa NovelBoundary 0 3.41 6.18 10.70 16.22 8.15 2.90 8.21 15.28 12.90 13.38 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 6.46 0.00 0.00 0.00 42 ER9a ExonRegion 0 6.10 24.76 24.73 18.71 46.74 16.01 56.61 31.66 37.81 31.18 22.40 47.62 40.63 46.04 20.28 17.51 22.78 19.32 22.09 60.11 24.79 22.81 19.06 43 E9_Da NovelBoundary 0 5.78 2.57 11.53 19.38 0.00 0.00 32.15 29.24 4.75 5.18 0.00 0.00 0.00 0.00 8.90 0.00 0.00 0.00 0.00 18.34 0.00 0.00 0.00 44 E9a_E10b KnownJunction 0 11.11 32.95 32.88 15.82 43.38 33.28 50.04 24.11 49.28 39.25 22.06 54.62 28.08 24.43 43.39 12.05 38.52 12.85 13.84 86.03 26.44 41.27 4.35 45 ER10a ExonRegion 0 0.03 2.25 0.60 8.37 5.12 1.91 14.22 3.69 4.48 2.01 0.34 2.63 4.70 0.87 1.34 1.30 1.95 0.14 2.73 5.04 1.02 0.12 0.24 46 E10_Ab KnownBoundary 0 0.00 3.35 0.00 5.16 20.97 0.00 19.70 0.00 7.64 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 12.78 0.00 0.00 4.35 47 ER10b ExonRegion 0 3.22 23.07 26.41 23.82 45.38 39.71 92.51 24.76 52.53 36.29 24.38 60.75 40.06 53.19 16.77 23.13 29.05 27.02 15.16 70.97 30.39 22.77 22.33 48 E10a_E11a KnownJunction 0 2.82 20.79 36.87 20.51 44.99 27.94 96.19 41.28 40.83 36.40 19.64 45.91 45.61 67.04 26.45 8.03 28.33 38.18 9.51 82.07 34.29 11.14 8.54 49 ER11a ExonRegion 0 7.34 24.98 21.90 28.32 35.45 34.94 74.62 28.22 42.30 34.58 19.35 63.62 32.07 51.05 19.36 20.09 41.51 24.24 27.35 62.74 30.64 33.04 23.01 50 E11a_E12a KnownJunction 0 13.71 36.57 23.98 34.43 20.29 30.83 85.41 18.77 60.91 26.41 14.11 52.07 41.72 41.79 28.18 15.04 18.14 25.41 43.77 40.40 20.76 20.88 26.21 51 ER12a ExonRegion 0 10.63 36.08 18.15 26.44 41.62 23.27 84.53 19.03 52.25 39.10 21.37 34.54 28.45 47.79 22.28 22.49 39.35 29.50 25.84 51.99 25.34 28.50 26.92 52 E12_Da KnownBoundary 0 7.26 2.57 1.60 5.03 7.30 0.00 15.06 0.00 1.79 1.67 0.00 0.00 0.00 4.83 0.00 0.00 0.00 0.00 8.28 3.00 0.00 0.00 0.00 53 E12a_E13a KnownJunction 0 6.45 5.99 5.77 4.73 30.73 2.67 40.28 8.21 12.47 13.43 4.90 0.00 0.00 0.00 9.89 3.33 9.26 1.62 9.60 0.00 2.41 0.00 0.00 54 E12a_E14a KnownJunction 0 6.52 14.47 9.34 9.19 27.16 18.06 73.49 16.63 21.15 23.13 10.69 42.61 21.43 34.38 6.18 19.31 20.85 26.86 4.42 52.16 23.41 17.21 12.04 55 E12a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.45 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 2.49 0.00 2.33 3.67 56 ER12b ExonRegion 0 2.12 0.64 0.69 1.33 9.07 0.00 10.33 0.00 1.14 1.15 0.00 4.22 4.35 1.86 0.00 0.00 0.00 0.00 3.03 1.82 0.00 0.05 0.00 57 E12_Dc NovelBoundary 0 0.00 6.31 4.08 3.13 34.72 0.00 49.24 1.60 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 2.56 0.00 0.00 3.93 58 ER12c ExonRegion 0 0.00 0.00 0.00 0.00 3.57 0.00 3.68 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 I12 Intron 0 1.41 1.81 3.66 7.24 7.75 1.23 19.46 6.31 3.69 3.43 0.00 1.59 4.49 0.81 0.46 0.66 0.74 0.00 1.42 2.37 0.49 0.93 1.96 60 I12_SR1 SilentIntronRegion 0 1.42 1.82 3.68 7.27 7.78 1.23 19.54 6.34 3.71 3.44 0.00 1.60 4.50 0.81 0.46 0.66 0.74 0.00 1.43 2.38 0.49 0.93 1.97 61 E13_Aa NovelBoundary 0 3.78 16.51 7.66 3.43 12.22 0.00 9.89 6.45 8.62 5.59 0.00 0.00 6.82 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 62 ER13a ExonRegion 0 5.53 14.91 4.15 6.74 24.97 1.83 39.50 8.26 10.70 13.70 3.54 0.00 1.30 2.89 8.06 3.47 16.14 1.23 6.90 0.00 5.88 1.97 6.53 63 ER13b ExonRegion 0 6.18 11.58 5.88 6.00 16.96 5.82 32.43 11.64 7.39 6.54 2.24 8.19 11.73 6.44 11.71 3.23 5.73 3.39 4.42 4.54 1.74 2.19 2.12 64 E13_Db NovelBoundary 0 0.00 0.00 2.84 5.16 4.24 0.00 21.20 2.26 5.21 4.03 0.00 0.00 8.28 0.00 0.00 3.16 0.00 2.45 3.86 0.00 0.00 0.00 0.00 65 ER14a ExonRegion 0 4.46 16.18 10.95 10.24 18.65 35.34 68.26 11.78 28.45 24.52 15.84 34.77 25.58 35.73 10.55 14.32 26.41 25.11 14.72 48.13 38.00 19.79 26.96 66 E14a_E15a KnownJunction 0 3.41 28.55 11.06 20.21 41.09 41.11 88.28 6.82 36.23 33.39 18.32 52.67 26.78 44.62 9.64 23.16 18.98 24.13 27.77 55.29 47.20 21.00 47.97 67 I14_AR2 ActiveIntronRegion 0 0.00 4.97 2.45 0.00 0.00 1.83 17.06 5.38 6.18 4.97 0.00 4.33 4.69 0.00 0.00 2.97 3.30 0.00 2.12 4.02 1.71 0.00 0.00 68 ER15a ExonRegion 0 5.50 13.65 12.25 14.07 12.32 28.11 55.62 14.16 34.70 41.31 21.29 47.55 28.48 34.23 11.88 20.64 21.05 24.86 20.37 46.50 36.99 30.23 23.46 69 E15a_E16a KnownJunction 0 6.96 22.17 11.38 18.31 21.05 41.23 83.51 10.56 31.45 41.07 18.32 81.33 43.34 51.27 26.70 13.84 30.29 14.55 22.31 48.00 15.57 18.55 19.72 70 ER16a ExonRegion 1 5.25 19.03 12.88 13.93 19.07 29.73 94.52 14.06 35.88 34.97 14.51 67.09 18.84 34.47 17.06 12.80 18.48 15.56 19.87 39.95 7.01 24.98 17.54 71 E16a_E17a KnownJunction 0 0.00 17.76 7.84 17.05 21.22 37.65 111.91 18.85 40.74 25.04 9.95 49.22 12.99 25.96 13.35 11.88 9.35 13.97 16.66 55.29 8.90 43.72 11.69 72 ER17a ExonRegion 0 0.00 29.53 14.66 23.03 24.30 36.97 95.83 19.53 43.35 30.48 17.71 26.67 23.83 35.37 16.89 12.66 15.84 11.79 13.76 52.51 24.99 24.59 4.82 73 E17a_E18a KnownJunction 0 0.00 34.66 23.95 28.04 40.83 33.73 97.69 18.94 40.25 28.98 16.85 26.11 6.49 40.97 41.54 7.69 26.18 12.68 14.02 73.76 35.52 15.37 7.26 74 ER18a ExonRegion 1 4.83 17.38 14.13 20.34 18.11 24.41 40.80 17.34 41.87 34.32 15.17 57.96 11.06 40.48 23.51 24.24 16.04 16.97 20.59 57.32 38.10 30.72 27.55 75 E18a_E19a KnownJunction 0 0.00 16.12 7.81 28.40 7.05 37.02 44.96 7.56 47.34 32.31 12.00 18.46 19.80 31.20 13.23 12.30 23.47 13.97 15.81 49.98 61.41 22.84 23.05 76 I18_AR1 ActiveIntronRegion 0 1.08 5.46 5.59 4.93 3.42 2.31 26.49 4.00 5.15 4.42 1.01 1.96 9.34 2.51 0.59 0.76 1.57 2.02 0.41 5.89 1.07 0.00 0.00 77 ER19a ExonRegion 0 1.86 22.33 6.44 25.52 12.69 21.88 60.33 11.80 40.84 31.20 19.06 14.18 7.60 36.51 23.61 6.41 15.99 12.84 6.15 48.46 53.08 20.91 26.13 78 E19a_E20a KnownJunction 0 0.00 28.61 6.12 19.44 3.82 25.38 66.86 16.39 28.33 32.10 19.43 18.61 0.00 25.08 18.67 8.29 3.65 12.06 4.52 56.12 33.98 22.04 23.99 79 ER20a ExonRegion 0 7.97 36.99 12.63 34.20 24.22 36.39 55.77 23.35 46.15 40.79 9.73 19.30 22.81 17.69 12.58 12.04 10.99 12.77 14.28 40.07 15.88 21.24 16.37 80 E20_Da KnownBoundary 1 0.00 17.30 19.63 29.40 29.37 30.04 32.24 20.95 50.20 29.52 7.21 31.36 26.46 4.89 32.76 0.00 0.00 2.11 4.42 20.65 3.03 22.66 3.16 81 ER20b ExonRegion 0 3.26 17.84 12.91 22.32 19.33 14.28 22.37 15.88 29.78 26.18 3.73 7.14 11.98 5.54 13.49 0.77 2.56 1.21 9.33 12.79 0.94 15.95 5.43 82 IG9_SR1 SilentIntergenicRegion 0 1.58 4.56 2.66 5.43 7.79 7.07 11.57 3.85 14.99 9.73 1.29 2.70 4.77 3.46 2.56 1.87 1.69 2.39 4.13 3.34 4.25 5.91 6.82 83 IG9_AR2 ActiveIntergenicRegion 0 1.87 1.97 3.41 11.83 16.68 15.52 17.94 6.11 21.98 15.32 3.59 1.87 14.23 3.27 2.76 3.42 4.38 1.63 4.37 5.25 2.73 12.49 6.45 84 IG9_AR3 ActiveIntergenicRegion 0 2.22 13.06 7.42 16.51 18.24 12.26 15.45 7.09 21.24 23.08 2.53 7.15 5.06 3.46 4.63 3.12 2.16 0.24 4.59 3.35 1.73 11.47 3.85 85 IG9_AR4 ActiveIntergenicRegion 0 10.59 18.86 8.66 21.56 28.34 23.91 22.88 10.32 31.03 28.59 1.88 6.01 5.67 3.48 4.66 2.74 2.43 1.38 6.38 5.89 3.83 12.73 7.58