Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRKCA Gene 0 23.90 206.14 20.21 20.48 80.54 106.31 27.84 299.28 308.52 171.59 62.78 2.83 5.37 3.30 14.78 1.94 63.84 433.06 241.31 74.98 141.03 143.33 75.54 2 284384 Transcript 0 15.83 111.32 11.97 13.83 37.22 53.80 12.98 190.41 209.19 117.20 39.00 0.92 3.74 2.70 11.67 0.98 41.74 424.19 153.21 53.05 93.41 74.17 53.03 3 413366 Transcript 0 0.06 0.56 0.00 0.00 0.00 0.00 0.74 0.76 0.01 0.46 0.57 0.00 0.00 0.00 0.00 0.00 0.92 3.60 0.89 0.03 1.26 0.00 0.02 4 IG41_AR1 ActiveIntergenicRegion 0 12.52 1.20 8.37 3.60 7.12 4.88 2.35 11.41 5.99 6.32 0.29 0.00 0.57 0.00 1.21 0.00 2.93 1.63 2.35 0.63 2.93 2.46 0.87 5 ER1a ExonRegion 0 1.67 0.43 0.00 0.00 0.00 1.54 0.42 4.37 7.80 2.96 0.00 0.00 0.00 0.00 3.36 0.00 3.82 10.02 2.85 9.41 6.38 2.74 0.00 6 ER1b ExonRegion 0 4.84 22.79 6.21 7.10 5.65 17.00 4.45 91.79 118.99 62.22 39.86 0.00 4.05 1.44 9.23 0.00 48.66 348.50 116.17 55.45 87.24 60.74 42.60 7 ER2a ExonRegion 0 15.34 38.26 11.18 4.98 20.90 17.19 9.56 150.65 194.80 99.31 76.23 0.00 4.54 3.10 3.63 0.00 104.18 361.81 154.19 71.21 195.03 90.57 49.19 8 E2a_E3a KnownJunction 0 24.15 39.40 8.31 5.39 35.48 33.39 12.72 168.90 214.81 104.14 66.60 0.00 13.47 2.47 4.45 0.00 109.40 393.56 192.57 75.49 189.72 107.71 69.66 9 I2_AR4 ActiveIntronRegion 0 11.04 38.39 4.59 3.39 13.70 2.60 10.34 31.27 17.46 11.11 0.82 0.00 0.00 0.11 2.03 0.00 6.75 11.51 15.95 9.16 2.74 1.46 7.42 10 I2_AR1 ActiveIntronRegion 0 9.29 51.16 2.54 4.47 10.42 0.60 13.97 94.84 37.52 32.57 0.32 0.00 0.47 0.00 0.00 0.00 6.75 10.33 6.01 6.24 1.80 0.68 3.22 11 I2_AR3 ActiveIntronRegion 0 6.69 15.75 2.84 2.93 8.57 3.58 9.06 61.03 22.91 14.85 0.37 0.00 0.00 0.00 0.00 0.00 4.16 22.29 7.12 6.91 3.91 0.40 10.80 12 I2_AR4 ActiveIntronRegion 0 0.10 10.17 0.00 4.09 15.04 0.00 9.77 86.09 27.94 19.61 0.09 0.00 0.00 0.00 0.00 0.00 10.22 39.51 5.16 0.10 6.61 0.00 2.94 13 I2_AR10 ActiveIntronRegion 0 17.37 24.66 3.17 4.23 10.37 6.00 13.63 56.43 24.65 12.40 1.73 0.00 4.10 0.00 1.87 0.00 8.05 40.65 17.52 1.11 3.58 1.91 14.74 14 I2_AR11 ActiveIntronRegion 0 25.40 44.74 2.45 2.73 8.03 11.00 13.24 59.92 26.14 17.39 1.93 0.00 0.00 0.00 5.80 0.00 5.50 38.80 15.93 2.13 5.14 4.17 23.49 15 I2_AR12 ActiveIntronRegion 0 15.12 32.05 2.45 2.73 9.30 5.59 3.47 49.88 22.82 16.66 1.01 0.00 0.00 0.00 2.90 0.00 0.79 27.98 12.59 4.56 2.52 2.18 20.42 16 I2_AR13 ActiveIntronRegion 0 11.04 41.92 1.85 2.69 4.19 3.67 13.82 70.76 18.26 32.30 0.00 0.00 0.00 0.06 2.90 0.00 6.69 31.39 29.81 8.05 6.72 2.70 2.03 17 ER3a ExonRegion 0 24.91 49.91 9.35 8.00 21.66 43.35 17.75 179.90 242.93 130.58 71.24 2.19 9.78 4.05 13.21 0.00 96.88 609.27 207.59 91.03 195.12 125.81 91.57 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 19 E3a_E5a KnownJunction 0 16.82 64.53 10.56 15.98 11.12 34.70 7.91 213.71 297.45 164.50 65.86 0.00 6.33 4.94 17.80 0.00 78.82 878.44 238.60 85.59 147.09 82.79 91.59 20 I3_AR4 ActiveIntronRegion 0 13.36 11.18 0.37 3.21 6.73 1.50 6.67 16.82 10.24 8.41 1.52 0.00 0.00 0.00 0.24 0.00 4.87 25.52 14.97 6.83 7.89 0.00 5.72 21 I3_SR4 SilentIntronRegion 0 11.64 7.46 0.00 0.00 0.00 0.00 5.30 5.19 3.71 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.24 9.03 2.13 0.00 0.00 2.94 22 ER4a ExonRegion 0 0.17 1.67 0.00 0.00 0.00 0.00 2.21 0.57 0.04 0.00 1.71 0.00 0.00 0.00 0.00 0.00 2.76 3.39 2.66 0.10 3.79 0.00 0.05 23 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 0.00 0.00 0.00 0.00 24 I4_AR1 ActiveIntronRegion 0 17.50 11.52 7.43 4.09 5.17 2.81 13.59 69.02 16.14 11.47 0.00 0.00 0.00 0.00 0.00 0.00 3.30 5.30 22.93 7.94 3.23 0.00 14.10 25 I4_AR2 ActiveIntronRegion 0 10.48 9.93 4.41 1.12 5.13 0.83 12.51 34.61 8.56 4.79 0.00 0.00 0.00 0.00 0.00 0.00 3.34 3.59 2.77 3.90 0.47 0.00 6.61 26 I4_AR4 ActiveIntronRegion 0 11.35 14.52 0.54 2.88 13.61 1.65 5.29 43.42 14.36 16.01 0.68 0.00 1.59 0.00 1.53 0.00 3.33 11.59 4.48 4.16 3.60 2.41 5.05 27 I4_AR9 ActiveIntronRegion 0 10.58 9.15 0.00 0.00 0.00 2.75 7.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 8.33 0.00 28 ER5a ExonRegion 0 11.51 67.22 6.91 13.99 23.39 48.01 22.25 168.83 232.74 132.48 75.26 0.97 7.41 4.15 10.75 0.00 105.01 554.84 259.83 97.85 186.55 123.37 79.89 29 E5a_E6a KnownJunction 0 10.59 71.63 9.96 13.42 28.52 51.62 28.57 122.56 211.63 141.11 77.86 6.30 0.00 2.35 4.45 0.00 64.05 547.68 241.32 102.71 156.73 103.30 43.02 30 ER6a ExonRegion 0 6.37 74.72 16.13 12.58 33.48 65.36 24.36 156.04 247.81 134.76 87.18 1.98 3.93 7.99 13.47 0.00 116.02 598.48 267.42 101.83 172.74 119.88 87.53 31 E6a_E7a KnownJunction 0 23.41 94.00 6.33 5.53 42.61 129.19 21.46 205.78 277.40 161.36 97.02 0.00 8.28 4.94 13.35 0.00 119.96 519.62 316.24 130.26 132.39 157.43 100.22 32 ER7a ExonRegion 0 21.14 79.92 11.34 11.19 53.28 81.17 29.06 235.85 270.10 151.27 87.72 6.98 0.81 4.46 9.74 0.00 146.33 473.69 292.81 118.16 163.61 136.38 100.15 33 E7a_E8a KnownJunction 0 13.26 124.45 13.16 7.46 99.41 109.99 50.26 279.67 291.37 176.00 57.38 0.00 0.00 16.78 18.54 0.00 142.31 427.84 273.98 116.65 121.82 113.40 93.39 34 ER8a ExonRegion 0 16.01 95.61 10.97 9.55 42.81 60.11 27.83 202.65 255.91 140.81 71.26 6.73 4.69 3.24 6.73 0.00 116.66 431.24 226.37 94.09 166.22 122.31 71.09 35 E8a_E9a KnownJunction 0 6.82 83.87 8.34 7.13 15.11 86.88 22.39 138.91 244.15 142.37 71.28 0.00 0.00 0.00 10.75 0.00 77.89 415.78 131.58 99.71 147.59 137.78 81.69 36 ER9a ExonRegion 0 8.60 70.74 11.47 9.32 50.78 67.70 17.84 167.98 270.64 140.80 95.03 0.00 6.09 3.52 7.87 1.41 114.10 571.64 254.99 109.76 186.79 133.41 81.41 37 E9_Da NovelBoundary 0 17.86 5.85 8.93 3.00 16.30 17.38 6.67 56.64 37.70 22.46 5.11 0.00 0.00 2.47 4.45 0.00 13.37 107.86 51.86 9.08 22.12 14.76 7.94 38 E9a_E10a KnownJunction 0 0.00 41.77 3.99 8.42 40.32 57.52 12.37 148.98 314.44 115.67 74.49 5.85 0.00 0.00 5.81 0.00 140.44 650.94 237.94 85.52 191.32 156.82 72.81 39 I9_AR2 ActiveIntronRegion 0 8.34 26.76 8.08 5.25 6.83 10.29 4.11 64.13 35.68 23.94 8.38 0.00 2.85 0.54 4.71 0.00 9.76 123.99 39.70 17.05 12.42 11.87 19.58 40 I9_AR3 ActiveIntronRegion 0 20.87 15.31 6.19 3.33 3.20 9.63 7.13 74.85 41.24 22.87 4.78 0.00 0.00 0.00 1.85 0.00 24.67 118.15 40.61 18.14 10.59 12.62 16.40 41 I9_SR2 SilentIntronRegion 0 13.28 30.87 8.22 6.76 20.40 5.95 8.64 63.53 41.10 26.30 6.33 0.48 0.00 0.44 2.97 0.00 14.34 132.15 46.73 16.74 20.23 12.30 18.76 42 I9_AR4 ActiveIntronRegion 0 10.85 41.18 5.99 7.36 25.15 9.01 10.43 66.36 36.23 31.57 3.72 0.10 0.00 0.63 2.88 0.00 16.74 83.09 42.67 19.86 16.58 12.38 12.08 43 I9_SR3 SilentIntronRegion 0 30.89 63.11 10.94 10.81 29.26 11.81 12.31 92.89 50.71 27.58 5.13 0.61 0.68 0.22 2.80 0.00 14.19 95.89 44.14 15.74 11.91 12.97 11.81 44 I9_AR5 ActiveIntronRegion 0 20.67 108.11 8.32 11.38 29.42 12.23 15.11 95.12 49.64 30.53 7.71 0.00 1.34 0.35 1.77 0.00 9.72 63.67 32.77 12.03 10.49 13.21 14.14 45 I9_AR6 ActiveIntronRegion 0 41.67 90.61 11.00 13.09 29.43 15.68 14.01 114.04 69.38 39.03 8.26 0.75 0.00 0.39 5.30 0.00 16.19 139.86 64.04 18.93 19.28 23.65 16.66 46 I9_AR8 ActiveIntronRegion 0 8.07 11.92 2.43 4.71 11.90 4.68 8.25 25.62 25.31 10.04 2.32 0.46 0.49 0.72 0.63 0.00 12.61 89.25 36.32 11.37 10.42 8.31 7.55 47 I9_AR9 ActiveIntronRegion 0 11.80 17.64 4.46 4.12 9.62 5.39 6.47 30.57 20.44 10.25 3.82 0.43 0.47 0.00 0.35 0.00 12.00 107.79 39.70 12.62 17.92 8.97 16.72 48 I9_AR11 ActiveIntronRegion 0 10.88 23.64 6.73 6.96 7.71 5.03 6.69 33.31 29.72 17.08 0.43 0.00 3.39 0.00 2.33 0.00 5.74 68.32 35.28 9.53 12.44 5.22 12.54 49 ER10a ExonRegion 0 7.53 65.40 11.05 12.36 31.10 59.39 21.24 151.33 296.47 141.50 96.81 1.32 7.37 1.84 13.64 0.11 110.65 766.80 347.90 103.10 192.01 178.73 107.49 50 E10a_E11a KnownJunction 0 22.30 59.99 8.25 11.09 46.52 58.55 31.09 163.76 339.55 157.81 115.19 0.00 6.82 0.00 13.35 0.00 104.91 665.49 285.56 142.85 188.42 172.62 119.59 51 E11_Aa NovelBoundary 0 21.41 0.00 11.24 1.93 0.00 0.00 0.00 14.75 8.97 5.05 0.00 0.00 0.00 0.00 0.00 0.00 4.21 38.18 8.94 5.69 3.15 5.51 3.59 52 ER11a ExonRegion 0 8.82 76.81 9.56 15.12 35.08 51.83 25.32 187.69 297.21 146.98 87.26 1.05 8.54 3.25 13.91 0.00 122.66 668.17 317.88 99.79 184.42 153.37 96.67 53 E11a_E12a KnownJunction 0 2.89 39.34 6.86 2.00 22.16 41.34 10.07 131.15 265.16 152.90 54.75 0.00 0.00 2.47 8.90 0.00 70.13 428.92 158.12 87.06 152.71 99.93 73.58 54 ER12a ExonRegion 0 6.30 87.09 7.87 11.07 39.06 62.69 28.18 154.04 257.55 140.32 80.26 0.19 8.11 2.86 17.72 0.00 102.44 472.66 250.99 95.67 136.44 133.78 82.00 55 E12a_E13a KnownJunction 0 12.74 106.56 6.74 16.38 48.05 105.17 58.21 173.46 257.75 202.35 102.29 0.00 6.49 7.18 14.46 0.00 111.73 528.49 434.18 88.08 150.67 217.99 110.37 56 I12_AR8 ActiveIntronRegion 0 2.12 2.03 1.23 0.00 0.00 0.00 0.00 14.21 8.51 5.61 0.00 0.00 0.00 0.00 0.00 0.00 13.20 24.23 8.49 7.80 2.20 0.00 1.96 57 ER13a ExonRegion 0 13.27 84.67 8.56 11.75 44.98 101.15 34.53 186.89 269.82 176.59 110.70 2.61 6.92 4.92 8.98 0.00 107.99 447.27 295.08 79.33 175.70 153.75 109.35 58 E13a_E14a KnownJunction 0 16.23 107.68 5.62 11.89 38.12 99.66 32.64 215.97 296.12 162.60 112.45 0.00 0.00 2.47 9.64 0.00 122.30 373.37 234.64 99.07 171.31 143.23 138.03 59 ER14a ExonRegion 0 15.53 86.05 10.38 10.08 40.29 61.17 25.25 214.83 282.82 154.77 77.23 9.53 3.95 4.42 21.90 0.00 110.19 445.67 268.44 98.18 178.58 160.88 88.23 60 E14a_E15a KnownJunction 0 0.00 74.07 4.35 3.06 41.17 64.62 19.61 170.66 255.61 124.40 55.33 17.86 6.49 4.77 13.47 0.00 97.62 321.72 229.94 92.74 164.45 137.04 68.12 61 ER15a ExonRegion 0 8.20 99.42 8.21 8.26 48.89 74.46 21.09 187.68 281.65 120.76 73.31 12.29 2.95 4.35 15.51 0.00 95.97 466.55 213.46 92.51 181.22 142.97 90.64 62 E15_Da NovelBoundary 0 2.82 2.50 4.14 0.00 8.40 0.00 21.37 6.82 9.46 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.65 11.98 8.94 0.00 6.24 2.88 0.00 63 E15a_E16a KnownJunction 0 7.26 141.69 4.11 3.56 37.61 61.56 30.83 170.33 247.39 101.24 53.22 43.66 0.00 7.36 22.99 0.00 93.13 489.03 211.68 70.82 164.45 146.84 76.83 64 ER16a ExonRegion 0 9.72 121.98 10.06 6.41 52.75 111.98 33.52 187.46 250.66 141.37 82.90 9.66 4.04 4.42 16.66 0.00 91.87 493.97 222.27 94.21 218.43 141.10 75.07 65 E16a_E17a KnownJunction 0 2.96 93.86 10.17 11.82 34.55 75.70 46.06 129.10 228.61 145.03 65.17 0.00 0.00 5.47 5.19 0.00 75.18 385.39 181.93 81.37 151.79 155.29 52.67 66 ER17a ExonRegion 0 9.37 82.97 9.66 13.93 23.04 65.00 22.05 176.58 287.38 163.89 90.65 3.78 3.09 3.56 26.17 0.00 124.15 809.18 485.40 119.39 202.27 213.49 123.40 67 E17a_E18a KnownJunction 0 14.22 44.60 13.22 17.11 26.40 52.19 14.35 295.36 434.40 247.18 90.87 0.00 0.00 4.83 15.20 0.00 159.98 1083.67 671.08 117.22 260.64 291.84 126.34 68 ER18a ExonRegion 0 20.56 119.30 12.66 12.48 60.93 93.79 24.32 254.10 353.61 180.74 98.33 1.92 8.40 3.55 22.64 0.00 104.88 530.77 333.34 100.32 172.19 195.85 103.99 69 E18_Da KnownBoundary 0 3.19 98.86 9.52 11.89 90.24 103.24 24.51 183.85 248.67 125.12 34.27 0.00 0.00 2.47 38.57 0.00 36.00 193.55 191.91 73.70 136.22 126.94 76.66 70 ER18b ExonRegion 0 29.01 269.01 25.34 25.51 100.53 125.16 30.62 353.15 322.32 184.12 51.13 2.75 4.90 3.15 13.84 2.95 42.58 384.12 218.18 64.16 126.75 136.98 67.49