Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TLK2 Gene 0 64.90 147.56 124.12 135.64 136.05 112.95 130.83 131.22 119.83 186.18 85.55 77.47 73.46 93.12 61.17 72.16 70.42 69.98 68.69 89.13 46.34 62.58 47.52 2 343388 Transcript 0 20.37 37.36 47.96 70.22 57.39 37.99 75.12 56.52 60.44 84.21 30.11 57.32 53.08 54.62 42.28 41.01 67.04 94.85 44.52 88.97 22.36 42.56 80.92 3 326270 Transcript 0 0.55 2.08 0.01 0.00 3.29 3.68 6.32 3.30 0.00 4.62 1.18 0.94 3.88 4.30 0.00 0.80 0.90 0.48 0.84 0.60 1.14 1.43 4.16 4 346027 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG45_SR5 SilentIntergenicRegion 0 2.41 4.35 7.01 3.59 5.21 0.96 3.64 15.16 11.85 8.60 0.63 0.32 0.92 2.61 1.93 2.27 1.26 2.76 8.14 3.60 0.65 0.70 1.40 6 IG45_AR5 ActiveIntergenicRegion 0 3.92 10.67 16.25 18.72 18.36 8.70 10.98 30.84 25.01 21.12 2.25 2.33 2.21 6.04 2.42 6.34 3.03 10.81 20.18 13.36 4.33 2.50 2.10 7 IG45_SR6 SilentIntergenicRegion 0 5.36 9.91 18.63 17.30 15.69 15.50 12.65 36.79 26.24 23.74 2.18 1.94 3.83 6.04 1.87 6.78 1.75 12.79 20.04 19.05 5.48 4.47 2.40 8 IG45_SR7 SilentIntergenicRegion 0 3.52 21.61 5.33 9.31 24.51 22.90 16.81 5.92 14.95 5.35 4.84 10.28 5.57 15.28 7.18 3.09 5.50 0.57 15.25 19.93 3.21 3.04 4.28 9 IG45_AR7 ActiveIntergenicRegion 0 17.15 78.87 77.08 76.52 59.69 32.23 47.58 74.19 85.71 79.83 11.53 27.66 20.80 46.49 27.46 23.09 20.49 53.23 78.98 67.48 10.94 13.99 9.36 10 ER1a ExonRegion 0 4.69 10.87 6.92 4.73 8.46 14.58 20.89 7.38 8.59 22.13 19.42 5.49 11.81 46.42 24.96 49.03 26.08 42.37 91.13 33.51 30.46 15.42 72.90 11 E1a_E2a KnownJunction 0 6.37 10.72 25.40 15.62 13.33 19.87 16.91 31.54 15.51 37.69 17.21 0.00 19.64 28.90 18.17 18.20 47.87 39.84 9.13 16.68 43.00 2.76 11.87 12 I1_AR2 ActiveIntronRegion 0 13.55 10.07 12.25 35.03 22.61 8.44 27.21 10.98 3.40 10.72 2.32 5.41 4.22 0.00 7.54 12.19 6.60 3.70 12.26 7.87 1.54 3.33 11.89 13 I1_SR2 SilentIntronRegion 0 4.05 7.22 20.09 34.98 15.84 7.70 30.32 12.97 10.03 12.17 5.38 17.86 17.69 1.09 5.63 8.10 4.98 3.65 3.15 13.31 1.70 1.15 9.39 14 E2_Aa NovelBoundary 0 7.56 6.12 52.19 56.20 12.56 5.79 43.01 22.22 18.43 25.52 5.05 6.15 6.17 2.88 0.00 0.00 4.77 4.85 0.00 12.59 0.00 3.12 4.35 15 ER2a ExonRegion 1 26.41 72.88 52.41 66.31 52.83 67.79 91.38 67.47 86.64 153.25 62.06 18.07 50.01 116.67 50.60 93.35 94.65 106.05 81.08 109.60 108.01 39.68 65.08 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I2_AR2 ActiveIntronRegion 0 5.54 15.98 19.30 25.30 14.00 4.45 18.75 27.47 13.48 25.73 5.38 12.87 19.66 4.32 10.27 10.38 9.22 1.29 7.57 17.72 3.08 5.01 5.89 18 ER3a ExonRegion 1 16.26 76.71 64.38 70.57 30.47 50.94 65.44 99.58 101.76 177.05 56.05 73.48 103.77 96.75 54.52 70.34 76.79 76.60 44.51 83.01 83.83 55.56 52.61 19 E3_Da NovelBoundary 0 10.82 3.29 4.52 7.29 63.84 0.00 35.99 2.26 6.60 3.76 0.00 5.85 13.15 2.47 0.00 11.96 0.00 1.58 13.55 0.00 0.00 0.00 0.00 20 E3a_E4a KnownJunction 0 37.19 110.18 118.30 121.96 44.99 66.55 109.57 123.92 171.67 273.02 114.24 126.04 161.03 144.21 103.84 166.02 115.10 138.08 48.19 138.70 102.43 68.58 86.39 21 ER4a ExonRegion 0 12.61 67.57 95.74 142.09 45.41 69.55 106.47 158.87 169.58 319.87 147.34 132.48 136.81 190.28 96.53 169.37 184.33 158.85 107.35 166.81 104.77 104.62 105.93 22 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E4a_E7a NovelJunction 0 3.56 12.50 27.59 13.68 4.16 18.46 24.73 17.62 28.24 21.76 2.58 0.00 6.17 4.94 0.00 27.00 17.11 29.22 26.07 27.10 6.12 9.25 36.45 24 ER5a ExonRegion 0 25.73 50.42 103.54 153.23 60.57 84.23 121.17 176.42 159.86 293.22 111.84 79.70 131.64 163.96 66.20 139.35 163.62 184.52 84.63 167.02 132.17 92.81 119.53 25 E5a_E6a KnownJunction 0 11.34 18.09 14.55 50.44 39.13 77.68 59.49 84.74 64.87 121.47 71.65 43.21 69.31 61.51 20.77 40.16 49.28 36.77 27.95 33.49 51.95 32.27 16.22 26 E5a_E7a KnownJunction 0 20.37 37.36 47.96 70.22 57.39 37.99 75.12 56.52 60.44 84.21 30.11 57.32 53.08 54.62 42.28 41.01 67.04 94.85 44.52 88.97 22.36 42.56 80.92 27 ER6a ExonRegion 0 18.96 49.06 21.25 51.73 51.87 123.32 82.73 76.14 105.78 139.60 81.52 69.36 100.54 101.27 49.41 85.05 75.16 40.67 37.53 63.14 52.59 50.57 39.86 28 E6a_E7a KnownJunction 0 17.93 42.69 30.34 58.20 48.47 119.25 70.48 75.54 100.81 145.86 96.81 79.68 79.22 110.84 77.38 60.50 67.70 50.16 58.64 81.49 63.32 43.72 43.88 29 ER7a ExonRegion 0 46.56 121.22 110.40 136.69 96.82 125.43 127.27 150.03 172.00 257.45 184.05 153.88 168.51 210.71 92.13 159.93 173.61 182.45 106.75 184.27 116.17 84.36 98.62 30 E7a_E8a KnownJunction 0 16.15 54.33 74.07 79.01 42.28 31.63 46.42 122.65 131.77 128.27 98.02 27.01 28.24 49.39 14.34 69.13 92.10 118.68 60.05 68.71 44.60 30.25 54.63 31 E7a_E10a NovelJunction 0 0.00 6.12 4.41 9.56 15.96 8.18 6.14 4.56 11.57 10.91 0.00 0.00 0.00 6.71 0.00 0.00 4.68 15.84 4.71 7.93 2.41 0.00 4.10 32 I7 Intron 0 16.79 16.16 13.75 27.34 19.43 3.18 26.78 22.55 19.52 24.50 0.79 5.22 7.30 0.71 6.29 7.02 5.37 5.75 7.14 11.64 1.47 1.04 5.28 33 I7_SR1 SilentIntronRegion 0 6.51 14.10 4.51 10.93 14.84 2.78 33.54 16.77 11.51 18.19 0.06 2.49 1.09 0.51 1.47 5.61 4.29 3.14 9.39 12.00 0.84 1.59 2.96 34 I7_AR2 ActiveIntronRegion 0 8.72 11.05 8.30 26.09 14.05 2.11 28.38 27.93 23.60 22.83 1.59 3.36 10.52 1.82 5.26 8.19 8.50 11.00 7.28 13.92 1.95 3.71 8.82 35 I7_AR3 ActiveIntronRegion 0 10.39 10.71 9.18 21.88 10.57 1.54 21.71 20.37 24.02 20.05 0.69 3.38 4.59 0.00 5.07 5.69 1.98 5.83 1.14 14.26 1.06 1.25 2.11 36 I7_SR3 SilentIntronRegion 0 25.79 18.82 17.55 31.17 28.61 4.10 34.14 24.54 21.20 27.97 0.60 7.10 8.33 0.85 8.63 7.45 5.13 5.20 10.10 11.15 1.32 1.17 6.63 37 I7_AR6 ActiveIntronRegion 0 25.48 22.96 26.54 46.61 20.73 3.74 26.60 26.84 16.72 33.78 0.00 8.04 10.14 1.31 5.11 9.22 9.80 5.02 5.29 12.39 1.13 0.53 4.58 38 ER8a ExonRegion 0 28.09 100.07 104.67 89.75 56.80 129.47 119.32 142.15 176.79 240.17 132.58 66.43 84.66 132.01 63.25 127.65 151.84 196.77 99.31 141.69 85.88 54.19 86.02 39 E8a_E9a KnownJunction 0 27.26 92.55 76.22 74.65 118.34 232.76 149.89 121.66 145.95 172.96 86.34 79.23 133.43 174.11 54.39 81.00 93.13 108.48 28.05 94.60 90.81 48.93 68.03 40 I8 Intron 0 8.49 13.94 11.91 22.84 13.98 3.37 28.12 14.64 11.39 19.36 0.97 5.82 9.95 1.03 4.48 7.45 6.21 5.11 7.86 11.21 1.56 3.14 6.75 41 I8_SR1 SilentIntronRegion 0 7.26 14.51 11.24 21.77 12.77 3.53 27.40 14.75 10.99 18.68 0.97 5.97 8.16 0.98 4.86 6.55 5.64 3.79 6.75 10.49 1.57 3.40 6.79 42 I8_AR1 ActiveIntronRegion 1 14.23 11.46 15.09 27.95 19.68 2.69 31.68 14.28 13.29 22.69 0.96 5.18 18.27 1.28 2.78 11.66 8.87 11.21 13.02 14.61 1.55 1.95 6.65 43 E9_Aa NovelBoundary 0 15.04 8.02 10.23 28.43 22.67 5.34 46.50 6.20 19.85 21.84 2.32 7.65 6.66 2.12 8.90 7.52 25.43 4.68 0.00 10.99 2.72 0.00 7.26 44 ER9a ExonRegion 1 37.28 72.31 90.05 96.27 125.62 175.45 151.36 121.25 157.31 198.02 75.38 86.26 241.11 142.99 60.99 101.63 94.34 100.95 49.97 99.75 32.27 61.59 40.51 45 E9_Da NovelBoundary 0 30.15 15.13 6.86 31.86 8.32 2.21 34.23 11.21 19.04 17.49 2.42 5.70 12.50 0.00 4.45 19.23 4.39 2.57 0.00 6.01 2.97 3.00 7.85 46 E9a_E10a KnownJunction 1 27.49 109.52 117.91 151.03 101.27 139.64 112.08 136.69 188.89 247.26 51.28 25.21 154.70 59.16 25.34 82.63 100.61 64.50 70.78 94.53 25.39 72.81 19.21 47 ER10a ExonRegion 1 42.75 104.08 113.94 119.80 78.08 147.93 155.27 139.69 194.47 249.14 108.54 75.94 137.62 87.37 29.46 44.29 125.43 60.29 39.63 86.24 51.64 57.55 24.58 48 E10a_E11a KnownJunction 1 37.56 93.80 72.11 88.00 81.75 151.22 215.03 108.11 184.05 209.15 103.29 27.01 65.42 7.06 0.00 3.33 119.12 17.95 0.00 49.15 26.75 2.63 8.54 49 I10_AR1 ActiveIntronRegion 0 4.74 4.66 15.30 19.70 13.98 2.57 26.40 22.56 12.42 13.93 1.88 5.00 22.81 0.95 4.26 4.33 12.44 3.28 4.46 10.50 1.25 0.65 6.66 50 ER11a ExonRegion 1 79.89 199.68 162.80 173.77 199.22 185.94 207.19 184.43 214.95 296.17 148.28 197.45 317.42 161.51 66.98 125.55 162.30 112.86 81.24 146.28 77.92 93.44 51.44 51 E11_Da NovelBoundary 0 5.78 3.35 40.00 47.15 8.32 2.90 21.68 6.74 13.95 20.15 4.69 0.00 6.66 7.00 4.45 3.25 8.32 1.53 4.80 12.34 0.00 0.00 12.12 52 E11a_E12a KnownJunction 1 57.57 215.03 105.64 142.17 160.53 229.24 304.33 160.02 165.74 205.66 111.98 148.70 119.15 100.12 13.97 75.71 73.21 64.71 109.46 87.63 63.26 45.99 46.61 53 I11_AR2 ActiveIntronRegion 0 22.30 20.74 20.75 26.80 17.61 6.03 35.72 6.36 7.58 10.15 4.45 12.65 8.17 2.56 6.40 6.85 5.97 3.63 7.34 9.11 4.71 3.08 3.38 54 I11_AR3 ActiveIntronRegion 0 16.11 27.81 11.01 27.34 20.79 5.10 28.18 11.35 9.82 17.00 2.33 19.22 18.50 2.38 2.00 2.62 6.62 2.09 3.31 9.74 0.04 7.73 2.69 55 I11_AR4 ActiveIntronRegion 0 4.93 7.28 5.54 15.35 11.05 3.54 26.17 6.95 3.09 8.90 0.90 10.79 11.59 3.93 6.00 6.38 9.57 3.16 6.48 10.08 2.31 1.60 3.09 56 E12_Aa NovelBoundary 0 21.78 21.51 11.62 23.14 39.73 8.35 56.97 19.59 5.15 8.62 5.05 12.60 14.45 4.77 13.35 24.18 14.21 9.78 8.66 20.26 0.00 3.12 8.02 57 ER12a ExonRegion 0 29.59 187.59 138.73 157.64 156.03 159.66 216.52 151.14 172.62 250.60 144.88 180.08 168.81 145.23 47.44 114.65 113.24 82.01 81.45 130.84 91.03 70.87 67.52 58 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 3.31 2.38 4.46 2.55 0.00 5.64 2.53 0.00 0.00 9.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.66 59 E12a_E14a KnownJunction 0 72.90 327.90 156.00 214.33 209.17 227.48 328.92 208.82 215.48 278.02 189.57 217.72 251.77 195.36 96.55 128.94 106.40 75.61 152.66 243.33 104.59 130.24 43.45 60 ER13a ExonRegion 0 1.64 6.25 0.04 0.00 6.57 5.75 12.64 3.12 0.00 5.21 1.03 2.82 11.65 3.89 0.00 2.39 2.70 1.43 2.51 1.81 3.41 1.96 2.67 61 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 1.85 4.23 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.16 62 ER14a ExonRegion 0 46.94 202.69 140.28 206.45 148.16 155.60 179.47 192.99 187.72 289.23 134.67 187.33 125.02 95.73 39.06 82.11 100.31 82.65 72.84 153.54 67.72 109.24 48.78 63 E14a_E15a KnownJunction 0 46.60 179.31 160.79 264.90 108.49 141.45 156.12 229.85 200.58 345.36 109.87 68.57 52.59 38.55 27.07 48.11 104.07 98.29 24.85 143.05 41.21 59.27 36.54 64 ER15a ExonRegion 1 86.80 287.23 182.81 248.35 288.76 223.35 307.54 213.64 223.43 329.28 178.18 296.17 275.71 186.04 93.34 123.68 150.56 86.79 92.21 209.44 49.88 140.11 87.38 65 E15a_E16a KnownJunction 1 107.72 485.18 249.37 283.55 463.84 294.66 386.60 191.90 255.00 367.07 209.26 380.07 232.94 209.78 116.45 111.00 156.90 50.37 133.18 285.58 42.63 224.11 60.01 66 I15 Intron 0 3.72 3.30 4.85 8.32 7.47 3.22 26.82 6.49 7.87 7.77 0.70 9.97 12.15 1.32 2.69 4.55 6.24 2.73 3.73 6.61 1.98 2.63 4.49 67 I15_AR1 ActiveIntronRegion 0 5.02 3.62 3.25 7.23 7.93 0.54 33.37 3.82 5.45 5.57 0.00 12.08 6.22 0.79 3.49 4.41 5.87 2.73 3.78 5.05 0.00 2.47 5.22 68 ER16a ExonRegion 0 54.33 250.80 173.64 215.07 222.90 220.15 262.50 180.81 220.38 286.25 141.55 195.41 184.97 134.29 68.67 72.56 112.83 26.59 55.55 168.81 18.54 137.03 30.69 69 E16_Da NovelBoundary 0 6.67 8.95 6.27 25.90 32.68 2.61 70.88 8.46 12.30 8.78 2.21 14.40 6.66 0.00 5.81 8.72 4.58 0.00 0.00 5.62 3.15 2.39 7.60 70 E16a_E17a KnownJunction 1 53.12 272.12 157.62 166.65 192.70 146.62 207.26 159.70 217.97 272.94 131.56 108.34 108.11 87.88 70.21 39.14 102.38 17.74 31.25 122.59 17.79 72.32 32.35 71 I16_AR1 ActiveIntronRegion 0 2.97 9.99 3.80 9.86 3.89 1.26 26.88 4.87 5.21 5.02 2.51 6.67 4.63 1.84 1.92 0.68 3.57 0.64 4.63 3.11 1.43 1.04 1.19 72 ER17a ExonRegion 1 24.34 203.07 133.41 138.75 70.82 79.01 96.76 125.54 175.51 217.33 98.01 190.83 149.98 85.28 56.45 48.62 65.48 25.55 49.48 94.89 14.13 82.89 38.53 73 E17a_E18a KnownJunction 1 26.60 237.06 185.15 210.73 110.19 124.70 182.04 172.26 190.16 288.20 82.60 216.07 145.45 184.47 59.46 81.52 45.44 39.63 85.18 149.31 8.03 183.33 44.13 74 I17_SR2 SilentIntronRegion 0 6.78 13.68 7.71 9.04 12.74 7.19 28.74 7.70 11.40 3.85 3.37 6.22 4.93 2.67 4.91 4.32 5.76 2.23 7.98 11.35 3.15 0.91 0.28 75 ER18a ExonRegion 0 38.31 209.21 164.17 216.99 203.12 107.79 155.87 184.14 212.06 300.97 174.78 254.24 175.56 143.73 70.44 105.64 102.51 36.24 83.24 136.19 22.06 142.23 55.11 76 E18_Da NovelBoundary 1 3.04 12.17 4.11 15.55 7.98 2.84 13.73 13.60 12.50 10.10 7.74 25.36 34.25 0.00 0.00 7.09 13.65 0.00 0.00 14.76 0.00 3.12 4.35 77 E18a_E19a KnownJunction 1 36.30 81.37 138.35 138.18 130.31 102.04 145.30 110.86 141.95 217.53 18.58 117.79 40.42 23.13 41.54 42.30 13.00 11.86 29.74 27.93 10.69 19.72 22.71 78 I18_SR1 SilentIntronRegion 0 13.56 10.02 3.15 14.01 11.87 7.68 27.71 11.42 6.80 8.00 2.38 13.74 4.96 2.31 2.52 9.52 6.51 4.53 3.14 11.53 4.89 2.05 4.34 79 I18_AR2 ActiveIntronRegion 0 10.57 6.56 8.39 17.01 12.22 11.58 27.65 10.21 13.02 11.33 8.50 5.72 4.87 2.69 6.85 10.53 15.35 3.97 3.50 13.06 2.85 6.63 7.92 80 E19_Aa NovelBoundary 1 10.30 5.99 22.68 33.50 11.80 8.23 30.83 4.15 22.08 9.16 7.63 6.30 35.55 0.00 13.35 7.35 4.11 6.14 4.80 9.46 2.53 0.00 4.10 81 ER19a ExonRegion 1 91.88 143.95 192.53 216.13 163.69 137.04 177.52 190.66 170.07 288.18 108.24 181.86 113.08 99.46 56.05 79.44 62.12 39.54 56.83 86.45 19.43 87.99 39.89 82 E19a_E20a KnownJunction 0 180.03 295.87 233.29 291.30 354.41 270.01 305.69 208.62 188.22 361.35 182.20 214.42 127.75 138.80 87.03 93.05 92.19 56.46 89.98 158.51 35.40 103.36 38.16 83 ER20a ExonRegion 0 92.65 213.10 145.65 164.66 149.44 153.91 170.39 144.68 119.76 245.13 95.55 132.47 97.28 76.15 61.70 74.32 67.54 49.54 48.67 75.39 16.47 59.60 32.66 84 E20a_E21a KnownJunction 0 65.94 163.39 128.06 139.14 96.26 121.29 127.59 123.26 80.24 220.51 91.02 51.02 92.53 46.27 32.63 71.35 47.78 56.17 30.02 62.00 17.98 32.51 28.00 85 ER21a ExonRegion 1 66.86 139.99 147.46 186.72 74.61 163.04 178.13 144.26 131.37 210.22 83.29 111.91 47.07 104.47 62.87 88.18 53.37 108.06 90.27 94.66 37.92 76.09 39.96 86 E21a_E22a KnownJunction 1 119.87 140.83 171.34 205.30 151.44 145.20 190.74 171.61 170.51 171.73 83.65 108.49 66.23 45.50 53.16 167.56 47.22 203.74 128.10 98.82 40.65 50.95 80.24 87 ER22a ExonRegion 0 91.48 148.64 245.47 239.55 188.96 266.10 228.91 180.08 194.55 301.41 137.15 104.59 44.95 156.89 118.17 166.49 84.72 175.74 127.71 132.64 80.29 88.18 78.83 88 E22a_E23a KnownJunction 1 130.17 265.54 328.70 312.31 193.46 283.36 271.60 196.05 243.57 372.04 205.21 203.77 74.67 283.71 184.07 140.31 149.23 165.03 183.91 181.72 79.94 90.87 95.18 89 ER23a ExonRegion 0 79.91 160.46 129.91 134.91 154.36 101.14 119.69 130.15 99.21 159.07 67.80 40.14 31.44 72.75 62.68 54.16 49.36 56.95 64.02 71.83 38.66 54.21 38.93 90 IG46_SR4 SilentIntergenicRegion 0 2.15 2.27 6.65 7.26 9.30 4.87 15.89 14.17 13.23 18.32 1.00 2.99 0.00 0.97 2.22 4.26 1.10 2.29 5.81 12.23 2.70 0.75 0.00 91 IG46_AR6 ActiveIntergenicRegion 0 3.65 1.76 5.25 4.09 0.96 0.53 3.33 8.34 6.88 7.62 0.00 0.00 0.34 0.10 0.00 0.64 0.00 2.71 2.75 6.43 43.73 39.57 42.67