Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM65 Gene 0 14.25 14.32 27.13 13.73 8.53 16.97 7.68 22.81 13.92 22.28 23.66 6.60 9.13 39.85 34.18 23.93 26.58 18.03 13.89 26.76 25.25 13.56 19.47 2 269383 Transcript 0 22.94 28.07 62.33 30.35 18.53 35.46 10.80 50.69 36.03 58.38 58.50 11.81 13.25 107.00 68.25 58.32 63.94 44.60 28.44 59.48 68.22 33.74 44.74 3 ER1a ExonRegion 0 2.02 5.42 13.40 5.92 1.73 11.83 2.29 15.79 7.62 20.32 25.59 2.15 4.05 36.65 38.32 21.93 27.12 22.37 14.37 20.33 28.01 6.60 20.76 4 E1_Da NovelBoundary 0 0.00 0.00 7.75 5.33 0.00 5.45 0.00 5.46 1.74 4.38 4.69 0.00 0.00 9.89 0.00 0.00 0.00 3.73 0.00 2.36 9.02 2.94 3.50 5 E1a_E2a KnownJunction 0 0.00 18.62 19.22 19.11 0.00 24.36 3.62 28.96 32.46 23.93 45.27 18.46 12.82 92.18 41.54 39.56 51.24 15.55 20.80 55.54 59.00 16.84 31.41 6 Ix Intron 0 11.04 7.72 45.05 14.90 14.23 19.54 13.05 19.72 13.14 17.39 13.29 6.41 8.23 30.87 23.00 20.80 17.62 24.78 13.12 22.03 14.09 7.08 22.02 7 Ix_SR3 SilentIntronRegion 0 8.20 6.19 29.05 10.21 8.64 14.54 9.77 13.66 9.85 13.32 10.96 5.81 7.13 27.64 20.68 17.95 12.48 20.67 10.72 17.27 10.87 6.73 20.45 8 Ix_AR1 ActiveIntronRegion 0 11.34 5.35 57.10 16.18 22.32 21.76 14.68 23.47 15.58 21.72 14.27 6.11 10.66 35.76 31.89 20.69 27.59 29.64 13.96 26.76 17.20 3.46 20.27 9 Ix_SR1 SilentIntronRegion 0 13.97 10.27 57.48 19.41 17.09 24.02 15.93 24.75 15.72 20.09 15.41 7.18 8.49 32.49 22.11 23.89 19.29 27.31 15.36 25.32 16.35 8.85 24.39 10 E2_Aa NovelBoundary 0 9.19 9.47 38.23 12.45 0.00 30.72 14.88 17.05 14.58 25.17 23.37 0.00 0.00 28.72 8.90 11.71 26.65 23.05 7.53 11.63 5.75 12.43 7.00 11 ER2a ExonRegion 0 22.58 13.58 44.08 17.14 12.57 21.39 12.84 47.05 41.63 46.40 54.52 9.97 9.53 101.37 62.10 43.31 76.33 34.30 12.44 59.84 73.94 23.55 35.36 12 E2_Da NovelBoundary 0 31.12 3.35 80.57 34.86 12.31 50.37 14.53 36.43 19.04 39.49 43.96 12.30 6.82 19.60 39.93 20.08 18.70 62.51 66.17 39.63 22.98 11.45 35.85 13 E2a_E3a KnownJunction 0 20.08 24.21 60.29 20.81 7.81 26.35 7.55 62.88 41.78 57.81 39.38 18.16 6.66 111.78 70.09 31.27 74.43 34.78 14.12 58.74 88.28 35.03 38.16 14 Ix Intron 0 8.07 7.35 39.96 11.83 4.84 8.47 4.52 15.00 12.19 19.22 15.91 3.60 3.10 26.16 23.40 16.71 15.91 35.40 16.63 19.22 14.62 5.86 13.56 15 Ix_AR1 ActiveIntronRegion 0 7.36 8.80 42.14 13.05 5.30 10.25 4.16 13.45 12.30 21.64 16.66 5.34 4.17 27.58 23.70 16.69 15.17 36.86 19.43 16.31 16.64 6.64 11.66 16 Ix_SR1 SilentIntronRegion 0 9.77 4.47 36.34 9.52 3.96 4.91 5.39 18.63 12.26 14.58 14.68 0.00 0.93 23.82 23.35 17.17 17.81 33.17 11.13 25.82 10.72 4.35 17.91 17 E3_Aa NovelBoundary 0 18.08 11.31 72.47 16.45 16.13 29.59 10.11 22.22 28.41 30.86 16.58 0.00 0.00 22.90 8.90 16.15 22.25 36.77 8.56 20.77 26.07 6.00 0.00 18 ER3a ExonRegion 0 21.30 28.67 106.71 40.84 25.49 50.34 18.68 64.45 54.15 63.16 71.30 9.86 14.29 135.23 104.05 72.89 83.09 66.01 37.26 95.40 95.92 43.74 64.49 19 E3_Da NovelBoundary 0 7.56 0.00 25.87 6.39 4.24 16.52 7.68 22.34 19.59 19.26 11.58 0.00 6.82 7.89 5.19 3.85 8.98 29.76 17.79 14.06 5.50 0.00 11.27 20 E3a_E4a KnownJunction 0 43.12 38.28 113.63 49.18 33.36 25.84 11.35 90.36 83.68 100.01 99.39 0.00 0.00 135.97 80.85 69.04 97.62 90.29 34.26 90.63 103.85 68.70 58.90 21 Ix Intron 0 0.00 1.28 1.15 3.84 6.74 5.77 3.33 1.62 1.16 0.00 8.52 4.97 0.00 4.27 5.37 5.61 2.08 2.90 0.00 2.68 4.16 1.31 0.00 22 Ix_SR1 SilentIntronRegion 0 0.00 1.31 1.18 3.93 6.91 5.92 3.42 1.66 1.19 0.00 8.73 5.10 0.00 4.38 5.51 5.76 2.13 2.97 0.00 2.75 4.27 1.35 0.00 23 E4_Aa NovelBoundary 0 10.74 11.71 34.83 20.48 0.00 24.02 10.29 24.40 17.79 10.10 17.37 0.00 26.62 13.77 27.94 4.27 8.23 18.61 0.00 0.00 13.34 8.08 10.50 24 ER4a ExonRegion 0 30.26 34.45 90.50 43.59 25.76 57.89 15.81 75.92 49.07 81.65 70.98 15.49 25.06 128.02 87.52 71.08 72.92 63.97 38.84 70.09 93.70 49.22 65.34 25 E4_Da NovelBoundary 0 6.82 11.18 31.40 15.82 15.20 26.41 8.44 19.55 8.68 11.28 14.79 0.00 6.82 22.37 20.03 4.02 3.46 10.28 0.00 19.56 16.12 8.45 15.62 26 E4a_E5a KnownJunction 0 35.27 33.48 37.46 25.67 11.12 50.65 13.03 55.29 30.06 70.65 42.80 18.61 27.11 108.72 68.98 63.40 47.69 39.75 12.99 59.76 72.77 29.82 31.16 27 E4a_E6a NovelJunction 0 3.48 23.75 37.28 18.58 8.40 10.79 6.32 21.03 27.75 19.99 15.53 0.00 0.00 12.24 38.94 24.78 11.78 13.76 11.86 14.89 30.70 17.02 28.00 28 Ix Intron 0 4.91 6.29 16.93 9.42 10.34 9.92 6.14 7.96 4.27 7.92 3.73 1.38 7.46 11.00 10.15 6.89 5.10 8.52 13.54 6.58 11.92 7.24 10.21 29 Ix_SR1 SilentIntronRegion 0 4.98 6.38 17.18 9.56 10.50 10.07 6.23 8.08 4.33 8.04 3.79 1.40 7.58 11.16 10.27 7.00 5.18 8.64 13.75 6.68 12.10 7.36 10.37 30 E5_Aa NovelBoundary 0 30.89 18.62 38.76 17.31 18.93 36.46 13.25 33.85 13.72 19.31 25.11 12.30 0.00 16.19 8.90 11.96 0.00 31.17 22.02 5.31 17.73 2.33 7.68 31 ER5a ExonRegion 0 26.07 32.54 68.66 35.15 23.60 53.01 12.40 39.96 22.16 66.42 78.08 12.14 18.40 133.03 80.66 82.68 62.72 47.90 36.15 58.12 68.35 33.90 53.35 32 E5_Da NovelBoundary 0 9.93 8.95 51.24 32.20 11.29 38.44 13.03 38.12 18.46 29.20 9.32 0.00 0.00 33.85 27.32 20.08 4.68 21.35 26.54 28.44 23.72 5.63 19.38 33 E5a_E6a KnownJunction 0 37.41 66.76 116.05 66.76 55.94 57.86 14.44 62.15 26.42 99.66 103.82 18.91 19.64 174.41 96.42 132.61 95.65 68.07 82.54 69.86 56.96 55.29 83.31 34 Ix Intron 0 6.35 11.26 27.81 16.40 6.79 9.73 6.11 13.08 11.47 13.02 5.35 2.47 2.67 11.93 14.22 7.54 6.09 13.57 5.15 17.18 8.65 3.37 7.45 35 Ix_SR2 SilentIntronRegion 0 8.25 14.64 36.16 21.33 8.83 12.65 7.55 17.00 14.91 16.92 6.96 3.21 3.48 15.10 16.03 9.81 7.92 17.64 6.69 21.70 11.24 4.38 9.69 36 E6_Aa NovelBoundary 0 21.19 46.44 56.27 42.52 8.57 37.82 7.64 40.58 23.73 18.78 15.48 0.00 0.00 27.02 25.09 8.12 4.77 38.22 23.34 35.47 14.83 0.00 15.37 37 ER6a ExonRegion 0 14.18 12.75 15.62 9.73 6.40 10.56 6.75 14.79 7.33 12.12 12.39 6.23 8.20 19.64 20.18 13.68 14.55 7.61 9.11 15.95 9.61 8.43 9.86