Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GGA3 Gene 0 108.39 65.02 161.41 129.67 100.52 117.18 96.68 193.19 184.13 240.50 223.31 115.09 163.00 289.99 240.83 264.37 202.41 152.33 149.41 132.29 126.33 108.30 105.38 2 245541 Transcript 0 37.30 43.50 94.44 99.11 90.04 102.33 65.99 140.52 152.72 237.90 157.35 82.42 87.59 257.60 183.69 297.35 155.75 127.72 156.54 132.53 71.02 78.72 112.57 3 351904 Transcript 0 0.00 0.00 6.83 13.72 0.00 7.55 3.36 8.91 6.51 22.67 9.48 10.80 0.00 24.19 28.06 43.49 4.39 14.80 15.34 14.64 8.53 24.06 43.71 4 ER1a ExonRegion 1 127.16 53.16 16.28 23.22 75.14 116.39 90.60 45.54 41.72 90.42 166.39 0.09 17.13 134.47 129.49 227.76 146.18 84.17 134.89 73.38 102.00 53.53 133.89 5 E1a_E2a KnownJunction 1 254.34 81.56 52.84 54.17 120.80 173.42 156.87 106.01 109.17 199.61 257.17 0.00 34.09 158.40 59.95 350.25 219.26 167.31 251.58 97.35 164.76 89.40 197.96 6 I1_AR1 ActiveIntronRegion 0 11.45 9.92 14.25 17.04 13.70 6.19 20.32 17.50 14.75 17.93 3.36 14.85 18.01 4.33 8.62 14.58 9.57 4.95 16.52 18.40 3.24 9.74 13.70 7 ER2a ExonRegion 0 51.82 21.48 31.60 34.31 37.37 47.66 46.90 73.65 71.38 101.00 91.46 23.79 51.20 56.23 34.37 85.98 69.51 73.11 63.00 62.33 52.09 29.81 50.54 8 E2a_E3a KnownJunction 0 32.30 9.60 37.28 50.11 52.29 21.12 15.90 80.79 86.86 107.50 90.87 31.96 45.45 80.52 46.85 67.42 76.48 52.89 23.72 72.29 62.40 16.78 15.79 9 ER3a ExonRegion 1 15.26 13.33 73.46 74.96 26.09 33.83 27.44 107.16 114.38 184.56 214.07 44.55 61.46 183.33 132.20 170.47 166.78 80.55 90.20 141.60 140.81 45.67 66.73 10 E3a_E4a KnownJunction 1 21.26 33.09 95.83 99.39 25.81 24.64 37.05 128.48 140.39 243.91 114.61 73.52 81.49 293.78 279.25 436.04 99.21 152.05 247.07 142.28 49.05 108.75 152.80 11 E3a_E5a KnownJunction 1 0.00 0.00 6.83 13.72 0.00 7.55 3.36 8.91 6.51 22.67 9.48 10.80 0.00 24.19 28.06 43.49 4.39 14.80 15.34 14.64 8.53 24.06 43.71 12 ER4a ExonRegion 0 40.86 42.54 88.97 105.36 69.79 69.28 60.97 147.81 168.20 240.44 198.93 72.29 92.66 215.56 149.19 325.97 185.62 131.53 163.74 134.45 86.84 75.79 132.83 13 E4a_E5a KnownJunction 0 49.79 54.86 98.52 92.60 174.53 213.06 99.94 145.28 149.56 229.35 158.51 101.43 88.63 263.47 122.63 130.05 182.42 99.57 58.83 120.87 77.16 51.62 52.07 14 ER5a ExonRegion 0 68.36 59.58 124.37 127.86 101.64 170.40 135.71 168.01 195.38 265.66 291.34 140.78 155.11 290.57 175.83 271.42 252.04 178.08 130.73 170.40 135.10 83.21 96.96 15 E5a_E6a KnownJunction 0 145.21 78.08 83.65 146.27 80.39 89.61 45.05 129.14 174.27 258.28 224.95 143.75 173.04 255.75 243.77 271.30 259.56 139.53 184.76 130.33 138.44 76.54 111.91 16 E5a_E7a NovelJunction 0 6.67 2.89 4.67 14.38 17.15 0.00 20.62 31.79 23.09 15.15 7.58 0.00 0.00 2.47 5.19 11.02 13.37 10.78 14.31 3.26 11.61 5.94 3.67 17 ER6a ExonRegion 0 103.42 46.64 128.03 122.16 79.81 81.83 79.76 169.14 165.45 234.87 277.87 198.41 225.12 371.05 190.70 288.87 257.95 168.23 144.44 179.99 139.62 117.30 97.11 18 E6a_E7a KnownJunction 0 157.29 51.37 155.26 138.91 115.03 65.70 148.03 239.63 194.27 281.57 317.45 285.39 231.97 412.68 203.85 372.38 349.51 239.06 159.72 193.73 185.02 168.09 125.14 19 ER7a ExonRegion 0 101.54 56.94 122.16 118.37 103.10 101.67 107.71 218.89 169.71 268.21 309.65 241.54 275.21 412.21 241.41 314.72 253.92 202.50 158.09 176.57 170.28 124.88 100.82 20 E7a_E8a KnownJunction 0 109.35 57.69 101.53 112.24 114.35 114.82 105.06 198.35 175.20 229.19 294.23 196.41 244.79 355.94 265.41 293.85 273.12 163.24 152.57 174.30 118.18 110.89 85.79 21 ER8a ExonRegion 0 78.94 62.91 118.12 113.04 98.17 124.98 106.57 186.67 185.05 280.35 322.84 232.38 270.32 417.87 215.16 333.29 301.29 180.14 146.71 173.37 166.68 139.69 124.76 22 E8_Da NovelBoundary 0 20.52 12.23 43.58 26.90 29.29 23.74 32.46 40.87 57.09 77.31 18.43 0.00 0.00 27.08 22.99 34.18 22.63 39.67 41.88 25.89 34.78 19.29 22.96 23 E8a_E9a KnownJunction 0 57.57 61.77 107.86 88.30 116.89 163.14 96.98 177.69 151.47 229.75 353.41 221.17 326.76 449.82 211.01 335.81 348.67 136.96 136.85 160.30 173.84 128.53 125.74 24 I8 Intron 0 24.64 14.28 24.97 20.65 23.24 22.03 22.02 22.38 30.60 44.53 16.79 4.75 8.77 32.01 25.42 25.26 17.69 36.49 28.84 22.41 21.99 15.01 17.36 25 I8_AR1 ActiveIntronRegion 0 24.82 14.38 25.15 20.80 23.41 22.19 22.17 22.55 30.83 44.85 16.90 4.79 8.83 32.24 25.60 25.45 17.82 36.75 29.05 22.57 22.15 15.12 17.49 26 E9_Aa NovelBoundary 0 90.39 50.85 95.41 60.66 84.21 91.59 50.26 106.05 107.49 137.35 68.12 26.86 66.23 71.75 62.43 86.73 47.31 70.10 61.74 54.71 31.94 38.39 73.58 27 ER9a ExonRegion 0 82.98 67.23 146.15 125.20 97.47 134.07 122.56 198.20 195.36 259.56 356.62 312.83 386.76 459.61 286.59 402.54 326.63 183.72 173.76 189.91 165.33 168.87 158.26 28 E9_Da NovelBoundary 0 51.27 12.56 46.27 31.56 27.16 24.36 35.20 86.58 59.98 65.87 45.80 50.27 33.11 62.51 57.11 95.02 70.22 43.07 49.88 33.43 29.28 18.68 44.39 29 E9a_E10a KnownJunction 0 124.61 80.78 162.18 192.68 103.65 103.35 130.37 200.81 228.82 329.92 311.66 300.40 364.75 348.76 404.97 495.25 333.99 217.51 227.30 181.84 150.06 202.38 181.91 30 I9 Intron 0 16.52 10.58 13.30 8.46 16.71 9.62 20.67 18.77 12.45 13.34 36.21 18.69 14.93 31.87 28.24 37.15 17.18 19.63 26.52 21.04 8.03 14.10 21.37 31 I9_AR1 ActiveIntronRegion 0 16.84 10.78 13.58 8.62 17.06 9.82 21.10 19.10 12.71 13.61 36.93 19.08 15.24 32.52 28.80 37.93 17.54 20.00 27.04 21.48 8.20 14.39 21.78 32 E10_Aa NovelBoundary 0 63.05 11.51 36.25 52.61 38.37 7.89 27.38 93.94 65.05 89.67 50.01 49.52 32.47 51.27 60.70 107.58 52.08 65.21 71.72 44.42 29.47 39.68 39.18 33 ER10a ExonRegion 0 128.42 62.61 207.04 150.90 115.86 146.48 131.73 247.82 257.86 372.89 440.44 310.09 406.59 456.41 326.30 455.04 385.50 228.22 276.55 197.71 208.99 205.25 156.77 34 E10a_E11a KnownJunction 0 89.79 84.46 199.02 132.35 72.84 107.10 110.01 240.61 266.52 380.69 326.19 216.52 357.93 407.50 218.56 289.75 316.22 183.47 108.05 188.62 156.17 167.35 135.98 35 ER11a ExonRegion 0 86.41 59.33 155.85 111.06 71.89 117.17 88.82 219.13 191.40 308.54 263.49 229.64 286.15 390.40 280.37 332.55 258.44 207.25 191.26 158.76 164.13 133.72 129.70 36 E11_Da NovelBoundary 0 65.57 19.01 58.60 45.91 37.95 12.15 18.24 59.23 41.12 70.03 49.33 13.95 41.56 74.28 41.41 79.21 38.34 73.12 28.99 50.43 51.28 34.78 68.29 37 E11a_E12a KnownJunction 0 85.20 48.68 83.56 49.88 39.05 100.91 57.37 178.43 115.13 209.79 163.99 104.28 151.29 293.37 202.11 243.44 197.85 124.73 142.97 115.43 87.41 97.61 96.20 38 I11 Intron 0 51.94 8.32 50.18 27.26 14.71 26.73 24.88 39.18 36.94 63.79 42.49 23.60 21.16 71.09 50.06 77.50 40.08 55.53 59.04 32.10 43.10 38.09 46.54 39 I11_AR1 ActiveIntronRegion 0 52.19 8.36 50.43 27.40 14.79 26.85 25.00 39.38 37.12 64.11 42.69 23.72 21.26 71.44 50.31 77.88 40.28 55.79 59.33 32.26 43.31 38.28 46.78 40 E12_Aa NovelBoundary 0 95.79 12.10 77.32 29.27 45.50 32.77 46.94 60.58 80.41 114.78 78.60 17.86 31.82 92.47 87.40 48.11 71.25 41.66 53.08 64.88 69.38 46.90 77.17 41 ER12a ExonRegion 0 113.22 56.77 95.53 43.44 36.25 54.01 51.21 133.48 123.63 197.01 156.10 82.63 115.80 254.28 157.24 165.77 186.38 96.86 117.50 103.18 88.24 75.68 71.10 42 E12_Da NovelBoundary 0 6.96 0.00 20.49 16.08 0.00 14.08 29.10 64.36 56.22 35.89 9.58 17.71 6.82 49.86 31.40 39.65 30.76 29.97 67.20 18.09 2.41 8.21 16.56 43 E12a_E13a KnownJunction 0 35.78 89.33 124.03 50.18 41.26 80.47 72.43 143.55 162.61 231.87 204.26 80.13 150.15 251.69 126.83 163.63 169.05 131.24 68.43 120.29 122.63 64.60 62.57 44 I12 Intron 0 12.51 3.56 13.19 8.00 9.96 10.03 7.24 25.93 27.80 23.19 13.54 7.86 11.05 21.60 29.85 26.02 14.45 14.27 29.98 14.44 16.40 12.31 16.07 45 I12_AR1 ActiveIntronRegion 0 12.62 3.58 13.29 8.07 10.04 10.12 7.31 26.16 28.02 23.39 13.66 7.93 11.15 21.77 30.09 26.25 14.58 14.40 30.23 14.56 16.53 12.42 16.21 46 ER13a ExonRegion 0 51.63 39.31 133.58 80.45 47.97 95.84 60.22 167.15 166.32 239.37 190.76 93.72 209.89 315.80 223.32 233.60 195.06 146.21 104.50 113.40 144.93 89.01 87.30 47 E13a_E14a KnownJunction 0 279.09 141.62 185.92 188.12 154.24 195.17 177.14 269.73 237.58 356.30 281.65 157.55 323.68 374.42 255.52 352.22 297.43 238.52 221.18 153.34 174.27 142.80 117.37 48 E13a_E15a NovelJunction 0 0.00 0.00 0.00 5.49 0.00 10.33 0.00 5.01 25.84 3.12 0.00 0.00 0.00 0.00 0.00 3.85 4.77 1.74 0.00 0.00 0.00 2.39 4.10 49 ER14a ExonRegion 0 85.38 61.42 108.68 73.51 79.58 115.91 77.58 113.95 124.70 174.28 175.82 67.27 174.79 253.69 211.38 210.63 178.80 131.45 115.17 93.11 110.12 72.57 97.13 50 E14a_E15a KnownJunction 1 44.23 46.57 165.04 117.60 49.41 71.78 65.80 199.13 164.44 211.19 117.40 69.17 82.79 293.01 302.00 482.61 137.35 238.15 235.40 93.89 72.90 125.28 211.44 51 ER15a ExonRegion 0 44.24 39.52 175.37 135.06 66.66 92.20 78.03 190.62 194.28 240.67 216.98 78.34 97.94 274.20 227.54 227.21 198.46 164.87 158.16 124.53 122.54 98.13 99.90 52 E15a_E16a KnownJunction 0 49.56 33.61 246.98 256.68 136.67 110.33 95.97 304.28 290.07 329.97 190.15 105.78 189.92 277.18 166.27 252.50 165.40 365.41 203.39 133.20 98.97 123.69 100.13 53 E16_Aa NovelBoundary 0 7.56 15.46 31.02 24.24 16.13 59.17 15.37 47.36 20.40 21.70 12.95 0.00 0.00 2.47 13.47 22.99 4.68 22.30 17.88 15.02 0.00 5.82 4.35 54 ER16a ExonRegion 0 83.48 77.62 195.31 174.90 158.40 141.67 108.76 203.62 214.30 260.38 286.07 96.42 175.22 427.83 307.72 445.69 243.26 269.39 289.21 145.18 164.27 143.33 188.79 55 E16_Da NovelBoundary 0 18.23 33.81 46.92 27.67 32.26 19.08 32.86 50.97 52.69 47.30 19.27 43.81 26.30 14.36 49.08 44.52 34.03 41.66 39.25 31.19 23.29 18.31 12.29 56 E16a_E17a KnownJunction 0 24.67 30.59 147.13 112.34 88.37 74.84 41.78 120.96 113.19 201.12 177.15 48.17 85.71 218.67 188.76 176.79 172.32 140.28 134.87 71.40 93.59 62.34 68.63 57 I16 Intron 0 18.13 15.04 25.59 9.49 20.31 33.91 25.77 32.09 33.32 24.29 19.19 8.33 5.91 34.96 21.33 24.85 16.06 33.61 37.20 19.47 12.01 10.54 10.86 58 I16_AR1 ActiveIntronRegion 0 18.27 15.16 25.78 9.56 20.47 34.14 25.97 32.33 33.58 24.47 19.34 8.39 5.95 35.23 21.49 25.05 16.19 33.87 37.49 19.62 12.10 10.63 10.94 59 E17_Aa NovelBoundary 0 16.60 21.64 49.14 29.13 15.62 23.23 24.60 50.52 38.11 32.05 37.22 0.00 5.68 44.68 20.89 27.60 30.01 29.64 18.17 24.48 13.59 8.57 7.34 60 ER17a ExonRegion 0 147.20 80.74 197.64 159.84 127.43 129.89 110.30 219.73 201.20 236.94 197.81 83.78 118.25 254.88 266.63 244.21 172.88 138.12 145.37 124.30 111.08 110.92 98.76 61 IG21 Intergenic 0 21.38 12.68 6.83 4.56 16.35 8.69 21.62 13.81 8.72 8.74 1.45 4.38 5.99 2.38 3.26 4.08 8.23 4.59 17.87 10.88 1.37 0.78 6.23 62 IG21_SR2 SilentIntergenicRegion 0 21.87 13.42 8.32 5.60 17.22 10.16 22.98 17.04 10.46 10.07 1.19 4.87 6.73 2.36 3.08 5.04 9.67 4.66 21.43 11.47 1.70 0.96 7.12 63 IG21_AR1 ActiveIntergenicRegion 0 11.99 4.07 0.00 0.00 7.58 1.22 15.67 0.00 1.24 3.44 0.00 0.00 0.00 1.08 0.00 0.00 3.30 1.85 0.00 4.61 0.00 0.00 0.00 64 IG21_SR1 SilentIntergenicRegion 0 22.61 11.07 0.00 0.00 14.31 2.85 17.82 0.00 1.24 3.44 3.13 2.89 3.13 2.99 4.97 0.00 2.31 4.84 2.53 9.79 0.00 0.00 2.38