Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAP2K6 Gene 0 24.30 33.40 39.83 18.48 37.96 40.70 42.35 26.33 31.54 59.60 67.15 48.19 32.59 83.89 32.06 144.51 31.94 34.45 21.86 88.45 14.87 2.05 4.74 2 359094 Transcript 0 15.78 23.27 32.45 16.66 52.24 65.61 40.63 31.37 30.11 48.06 34.51 7.75 12.92 8.65 3.94 34.20 28.51 46.75 22.44 85.95 8.83 3.30 7.11 3 435374 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 16.89 31.35 23.87 11.88 27.07 36.22 29.42 27.38 25.52 46.43 38.59 3.19 4.57 9.94 3.44 49.77 29.72 52.39 21.82 85.61 8.77 0.36 5.69 5 E1a_E3a KnownJunction 0 14.67 15.19 41.04 21.44 77.42 95.00 51.85 35.36 34.69 49.69 30.43 12.30 21.26 7.36 4.45 18.63 27.30 41.12 23.06 86.29 8.90 6.25 8.54 6 I1_AR3 ActiveIntronRegion 0 10.48 15.50 7.54 10.16 5.45 2.03 10.43 4.39 5.45 11.84 0.18 0.38 0.32 1.24 1.21 5.78 1.75 3.04 0.21 9.33 1.47 0.00 0.00 7 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E3_Aa NovelBoundary 0 21.41 6.58 0.00 4.63 15.70 0.00 43.15 4.52 4.92 8.41 0.00 0.00 13.64 7.30 6.18 20.68 0.00 2.57 0.00 3.13 0.00 0.00 0.00 9 ER3a ExonRegion 0 13.93 46.95 36.54 21.46 76.44 121.30 90.23 30.57 29.90 51.76 53.86 24.68 12.04 50.30 14.33 57.18 41.43 29.87 25.25 92.54 26.64 2.58 5.22 10 E3_Da NovelBoundary 0 6.89 20.39 3.10 5.59 4.07 0.00 12.59 5.83 1.30 7.82 0.00 0.00 0.00 0.00 0.00 3.25 0.00 1.82 0.00 11.82 0.00 0.00 0.00 11 E3a_E4a KnownJunction 0 8.89 65.45 28.95 16.51 36.08 74.50 93.14 19.92 25.23 52.86 48.64 31.06 18.02 59.74 9.89 74.25 39.83 21.56 22.97 96.64 39.54 3.00 8.37 12 ER4a ExonRegion 0 15.33 60.38 39.94 16.16 25.99 51.61 49.07 23.00 31.13 64.91 39.76 32.07 19.72 67.45 18.89 106.69 35.23 40.54 28.41 80.59 25.90 0.77 8.75 13 E4a_E5a KnownJunction 0 34.38 60.38 49.20 17.95 47.03 57.64 53.53 30.27 41.75 70.38 49.28 37.06 48.86 57.10 32.88 115.87 34.22 47.17 45.74 86.74 20.02 0.00 6.40 14 ER5a ExonRegion 0 40.07 48.86 45.26 16.32 30.04 33.35 29.38 25.38 36.97 71.33 100.75 42.50 36.45 125.23 30.26 211.13 49.66 46.89 25.09 91.43 25.67 2.80 3.19 15 E5a_E6a KnownJunction 0 26.23 31.64 59.34 10.49 9.93 8.23 16.52 10.06 30.50 64.09 45.17 12.00 7.30 57.04 54.27 164.14 30.95 13.97 4.61 95.04 26.81 0.00 3.67 16 ER6a ExonRegion 0 29.90 44.67 41.53 12.06 37.79 29.49 38.14 24.05 26.37 74.13 81.42 21.97 21.22 98.22 37.23 133.00 47.31 35.69 14.47 99.66 18.95 2.95 1.37 17 E6a_E7a KnownJunction 1 34.01 47.62 41.96 16.68 31.66 48.32 48.67 26.21 30.38 76.48 77.23 0.00 32.95 87.47 17.80 141.33 50.58 50.20 26.92 105.72 20.63 8.39 3.84 18 E7_Aa NovelBoundary 0 16.97 9.14 3.46 10.09 4.07 0.00 12.45 0.00 9.23 7.12 0.00 0.00 6.17 2.41 0.00 7.43 0.00 2.36 0.00 9.27 0.00 0.00 0.00 19 ER7a ExonRegion 0 42.71 32.49 58.00 25.70 50.24 54.84 51.11 29.63 36.92 83.05 118.88 38.74 58.04 140.47 50.09 244.91 57.41 45.48 25.27 136.88 15.77 4.93 3.51 20 E7_Da NovelBoundary 0 18.08 0.00 1.57 25.14 0.00 0.00 14.31 6.61 5.01 8.57 4.69 0.00 0.00 0.00 0.00 4.19 0.00 2.57 0.00 2.56 0.00 0.00 0.00 21 E7a_E8a KnownJunction 0 67.57 48.54 53.43 30.60 42.02 31.57 39.04 35.00 37.79 79.51 139.25 41.86 34.58 198.31 63.17 354.01 45.91 25.37 21.08 152.25 17.11 2.33 0.00 22 E8_Aa NovelBoundary 0 13.48 6.51 8.63 9.52 0.00 2.50 18.68 7.23 6.34 7.31 5.26 6.30 6.33 0.00 5.19 7.52 0.00 2.20 0.00 9.14 2.84 0.00 0.00 23 ER8a ExonRegion 0 39.32 50.96 69.99 24.53 39.42 27.08 34.96 44.61 40.74 79.89 139.24 86.42 60.79 167.22 45.03 284.92 53.26 38.70 24.44 143.00 16.91 2.80 6.83 24 E8a_E9a KnownJunction 0 46.30 68.94 88.97 16.38 62.90 33.45 28.66 42.47 41.98 71.94 125.72 109.39 64.93 145.15 48.95 241.90 38.99 41.45 33.32 107.96 16.12 6.25 3.76 25 I8 Intron 0 10.54 7.52 2.90 4.90 6.13 1.29 6.35 4.01 2.47 5.54 0.35 1.73 2.05 0.98 0.89 5.54 0.61 1.71 0.78 3.12 0.34 0.00 0.09 26 I8_AR1 ActiveIntronRegion 0 14.47 7.15 3.21 7.54 5.75 0.72 6.47 7.55 3.96 6.51 1.13 3.21 0.75 1.26 1.23 5.23 0.97 1.53 0.31 4.37 0.43 0.00 0.00 27 E9_Aa NovelBoundary 0 10.00 28.15 1.66 3.53 0.00 0.00 6.09 8.87 4.98 4.62 0.00 0.00 0.00 4.59 0.00 0.00 0.00 9.41 0.00 9.08 0.00 0.00 0.00 28 ER9a ExonRegion 0 35.75 47.60 52.52 34.11 56.34 70.27 69.68 29.56 39.85 61.01 103.14 110.54 66.80 126.29 52.52 241.62 49.46 41.57 29.39 111.95 20.90 3.21 10.07 29 E9a_E10a KnownJunction 1 32.08 61.30 50.86 34.49 72.16 48.04 56.62 49.37 42.85 70.03 148.72 115.69 89.77 199.84 64.78 318.21 31.79 66.20 18.07 157.88 32.43 0.00 0.00 30 ER10a ExonRegion 1 23.96 38.95 80.61 31.24 54.99 38.72 42.55 43.68 42.37 81.64 114.81 169.85 94.28 216.20 77.52 416.55 40.92 79.81 45.94 144.95 25.68 0.77 13.37 31 E10a_E11a KnownJunction 0 38.45 23.22 103.78 42.45 44.82 27.88 48.05 45.63 58.74 84.78 136.25 118.24 73.86 163.58 83.07 407.33 51.52 77.10 75.67 164.71 27.49 5.51 6.91 32 ER11a ExonRegion 0 35.21 42.52 67.12 36.47 56.02 42.86 53.37 38.27 45.06 83.19 102.24 112.60 58.56 139.07 68.26 244.88 38.64 39.95 35.81 113.33 24.71 1.53 10.43 33 E11a_E12a KnownJunction 1 114.24 124.71 98.78 45.22 111.04 74.16 87.49 42.35 42.01 103.20 129.03 150.95 110.38 219.91 118.30 371.70 36.75 46.84 30.87 147.07 15.75 3.12 12.72 34 I11_AR1 ActiveIntronRegion 0 6.17 5.47 3.85 6.10 5.75 1.48 9.88 5.84 7.29 6.53 6.60 4.32 1.23 5.91 2.55 40.81 7.12 3.05 0.43 9.86 1.78 0.00 1.46 35 I11_AR2 ActiveIntronRegion 0 4.23 0.00 4.90 15.90 0.00 0.00 3.97 10.37 9.47 10.13 9.34 8.66 4.69 11.37 11.12 49.04 9.90 6.47 0.00 20.92 0.00 0.00 5.87 36 I11_AR3 ActiveIntronRegion 0 4.23 0.00 4.99 14.99 0.00 0.00 3.40 10.37 9.62 11.55 6.63 8.66 4.69 14.39 11.61 63.05 4.24 4.22 0.00 18.39 0.00 0.00 8.39 37 I11_AR4 ActiveIntronRegion 1 3.48 0.00 5.43 13.04 2.10 0.00 2.55 8.02 10.94 12.45 7.59 1.55 4.36 11.37 10.15 67.51 3.77 3.43 0.00 15.20 0.00 0.00 7.13 38 I11_AR5 ActiveIntronRegion 1 0.00 0.00 3.68 9.09 3.12 0.00 1.32 4.90 10.29 12.62 6.44 0.00 0.00 8.39 7.25 64.89 3.30 1.85 2.65 14.89 0.00 0.00 2.94 39 I11_AR6 ActiveIntronRegion 1 12.78 13.86 4.90 5.30 6.64 3.06 10.89 7.87 5.08 11.09 3.51 8.34 7.82 12.75 2.04 31.26 0.00 3.08 2.36 7.88 1.31 0.00 0.00 40 I11_AR8 ActiveIntronRegion 1 4.23 9.15 7.35 4.09 8.03 5.50 11.92 8.93 4.94 8.41 7.73 8.66 4.69 9.74 5.80 43.59 0.00 7.08 3.19 3.55 2.20 0.00 0.00 41 I11_AR9 ActiveIntronRegion 1 4.16 10.51 5.51 3.91 7.05 5.50 12.80 7.14 4.94 9.63 12.56 4.76 8.75 6.55 1.93 36.26 0.00 4.80 3.19 3.90 4.04 0.00 0.00 42 I11_AR11 ActiveIntronRegion 0 3.39 3.36 5.45 5.32 6.29 0.00 6.88 8.64 6.05 17.15 0.00 2.81 3.52 2.52 4.50 12.19 0.00 0.00 0.00 8.40 2.20 0.00 0.00 43 I11_AR13 ActiveIntronRegion 0 7.94 4.58 4.75 5.45 16.05 1.83 14.07 5.40 7.10 17.49 1.93 5.95 9.38 3.05 2.90 10.77 0.00 1.85 0.00 16.76 2.20 0.00 0.00 44 I11_AR14 ActiveIntronRegion 0 10.48 3.56 4.84 4.16 15.52 1.65 9.47 5.79 6.67 17.09 0.19 8.23 15.01 1.95 0.00 11.59 0.00 1.85 0.00 11.28 2.20 0.00 0.00 45 E12_Aa NovelBoundary 0 3.78 9.80 3.46 5.36 7.89 0.00 14.79 4.56 3.21 13.78 2.32 6.30 20.29 4.36 21.14 28.80 0.00 0.00 0.00 8.95 3.15 0.00 0.00 46 ER12a ExonRegion 0 55.03 57.34 69.50 31.41 54.21 54.02 75.70 38.36 42.18 78.69 99.92 79.62 59.75 164.18 94.16 311.43 38.25 36.87 35.80 133.86 20.79 4.21 6.38 47 E12a_E13a KnownJunction 0 29.86 43.61 38.73 26.40 37.01 66.67 68.19 31.22 37.01 62.45 88.50 18.91 38.31 129.67 91.72 349.22 37.49 38.05 51.86 133.59 27.37 5.69 4.01 48 I12_AR1 ActiveIntronRegion 1 0.00 2.03 3.68 0.00 2.68 0.00 2.65 0.00 1.24 2.50 0.53 4.33 26.01 0.00 0.00 5.94 0.00 0.00 0.00 4.06 2.20 0.00 0.00 49 ER13a ExonRegion 0 14.83 18.26 25.96 12.14 29.10 29.31 35.76 18.51 26.93 47.40 38.63 35.26 22.29 56.06 22.23 78.64 13.45 13.51 12.97 55.72 7.90 1.94 1.49 50 IG12_AR1 ActiveIntergenicRegion 0 3.87 17.27 3.43 9.76 8.57 18.35 26.50 5.34 22.98 24.36 4.86 18.43 9.03 13.27 1.04 20.91 4.36 13.26 5.43 54.68 4.09 0.87 2.30 51 IG12_SR1 SilentIntergenicRegion 0 4.62 10.62 4.08 10.49 11.30 29.68 34.43 10.78 29.17 23.22 10.09 12.59 13.82 17.48 2.81 24.13 4.16 15.53 11.91 66.79 6.48 0.03 3.92 52 IG12_AR2 ActiveIntergenicRegion 0 6.35 6.10 3.68 11.72 8.03 39.79 37.73 7.26 27.79 30.74 10.63 33.77 25.80 9.26 2.90 5.94 8.58 12.93 2.55 90.00 12.78 0.00 0.00 53 IG12_AR3 ActiveIntergenicRegion 0 7.56 6.10 3.68 10.90 4.20 37.46 43.88 3.46 28.41 30.31 10.49 30.31 25.46 6.50 2.90 5.94 6.60 15.57 4.55 88.75 8.81 0.00 0.00 54 IG12_AR4 ActiveIntergenicRegion 0 9.44 6.27 3.68 10.68 6.80 38.66 39.44 5.40 28.61 31.97 8.13 12.09 20.13 4.06 2.06 0.99 6.33 14.17 6.37 75.71 5.69 0.00 0.00 55 IG12_AR5 ActiveIntergenicRegion 0 11.02 3.81 4.29 9.88 10.37 21.78 33.60 4.97 28.66 23.08 4.03 1.08 8.79 7.31 2.78 3.10 0.96 10.86 5.84 60.90 2.39 0.00 5.87 56 IG12_AR6 ActiveIntergenicRegion 0 4.04 9.37 3.04 9.38 6.73 31.51 33.62 7.12 30.24 23.56 4.63 9.71 11.80 6.74 0.44 13.60 0.20 16.01 4.34 49.45 2.47 1.89 4.63 57 IG12_AR7 ActiveIntergenicRegion 0 6.26 19.49 6.28 10.39 0.67 46.61 49.70 7.56 33.04 36.41 10.87 11.36 13.48 8.93 2.90 23.78 13.07 20.09 13.01 61.26 6.79 2.26 0.00 58 IG12_AR8 ActiveIntergenicRegion 0 11.22 11.40 5.80 8.95 0.00 20.73 32.15 5.54 26.96 30.81 11.85 13.15 5.57 16.24 0.27 17.72 15.32 17.19 17.49 66.72 3.45 1.73 0.00 59 IG12_AR9 ActiveIntergenicRegion 0 10.39 20.23 7.57 12.56 19.42 29.66 37.85 14.69 33.16 41.73 4.50 26.61 14.63 13.19 0.84 23.12 3.57 9.38 8.46 65.57 3.34 1.52 1.84 60 IG12_SR2 SilentIntergenicRegion 0 11.43 30.58 8.01 15.32 23.60 31.15 36.53 13.98 26.81 35.12 3.43 16.65 12.07 9.30 0.61 11.32 3.88 12.50 9.04 46.92 5.44 1.06 0.38 61 IG12_AR10 ActiveIntergenicRegion 0 4.15 17.75 4.22 7.80 22.44 24.11 25.52 8.20 21.25 37.05 2.05 13.44 4.47 6.77 0.28 11.54 1.53 5.52 3.30 34.81 2.80 0.61 1.15 62 IG12_AR13 ActiveIntergenicRegion 0 6.60 32.89 10.03 18.55 33.99 64.12 45.00 20.60 45.56 59.57 4.64 18.66 13.99 12.89 1.16 19.11 3.43 16.61 11.04 62.46 6.66 0.45 1.58 63 IG12_SR3 SilentIntergenicRegion 0 4.35 62.88 8.82 18.61 35.66 69.17 42.35 19.41 43.06 57.47 1.78 22.20 8.03 8.17 1.67 14.03 1.82 10.81 6.09 38.72 2.05 0.85 0.80 64 IG12_AR14 ActiveIntergenicRegion 0 15.50 87.13 23.55 33.38 67.87 81.04 56.92 31.10 50.50 83.05 4.22 14.83 9.45 11.87 1.48 21.50 3.77 17.27 16.26 53.33 6.47 1.05 2.13 65 IG12_SR4 SilentIntergenicRegion 0 35.49 96.89 51.99 64.55 87.30 116.00 63.10 42.33 57.41 98.58 3.73 11.06 5.44 15.14 6.27 36.83 5.42 38.90 21.56 82.56 12.83 0.24 2.10 66 IG12_AR15 ActiveIntergenicRegion 0 41.24 121.88 53.43 66.74 107.79 120.60 56.38 56.70 61.10 100.16 3.61 12.87 3.57 9.87 2.16 16.55 2.35 15.06 15.72 46.40 5.65 1.43 1.07 67 IG12_SR5 SilentIntergenicRegion 0 23.13 6.70 3.43 10.62 4.86 3.91 4.86 12.28 6.00 11.04 2.15 3.03 1.25 0.00 0.67 5.17 1.07 0.00 1.74 10.00 0.00 0.00 0.00