Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC003665.1 Gene 0 11.24 17.35 18.66 20.00 27.19 30.46 27.02 15.29 5.67 28.68 7.61 16.32 20.71 9.52 11.56 12.89 14.70 12.56 11.00 30.36 9.12 5.11 10.48 2 451140 Transcript 0 4.68 9.87 7.44 8.70 9.33 13.88 13.82 6.12 2.86 10.88 5.37 8.32 11.70 4.44 7.60 5.67 4.59 3.69 4.43 12.42 4.48 2.83 3.68 3 433001 Transcript 0 8.07 6.26 8.73 9.53 26.87 32.83 12.39 4.55 2.58 14.06 4.07 2.83 4.71 5.57 5.73 5.51 12.33 5.09 5.13 15.25 5.29 2.08 9.56 4 411573 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 1.51 3.68 0.00 0.97 0.51 3.75 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 4.10 0.00 1.58 0.00 1.01 0.00 0.00 1.82 6 ER1b ExonRegion 0 13.93 20.01 2.96 6.68 54.72 72.52 24.51 0.61 0.84 10.14 7.79 0.00 0.00 4.87 10.39 22.82 13.63 6.97 16.54 35.96 4.83 4.17 10.70 7 E1_Da NovelBoundary 0 15.85 15.92 1.27 9.69 50.08 91.31 31.44 5.09 0.00 6.80 11.21 0.00 0.00 0.00 0.00 15.04 16.83 11.15 19.86 55.54 7.91 2.63 0.00 8 E1a_E2a KnownJunction 0 15.41 2.50 3.61 6.16 45.25 41.57 13.96 0.00 2.95 12.52 5.00 0.00 0.00 2.12 4.45 7.69 8.42 1.74 4.71 12.59 0.00 3.06 14.00 9 E1_Db NovelBoundary 0 0.00 2.83 8.04 7.56 15.96 19.08 13.69 9.61 0.00 5.96 2.05 0.00 6.17 2.30 4.45 11.45 9.26 15.88 23.91 14.57 0.00 0.00 0.00 10 E1b_E2a KnownJunction 0 19.19 6.71 14.43 6.89 45.25 82.74 14.00 2.55 6.60 19.64 6.95 0.00 6.66 9.42 18.05 14.78 4.77 6.30 4.80 35.79 2.53 0.00 4.27 11 ER1c ExonRegion 0 21.34 22.37 10.52 9.09 87.85 131.12 35.31 2.45 5.66 21.03 14.01 0.00 0.00 12.18 15.47 29.23 19.81 10.78 25.75 62.41 6.61 6.60 14.68 12 ER1d ExonRegion 0 19.82 12.57 10.58 6.81 56.68 93.86 26.96 1.73 4.94 15.22 12.83 0.00 5.12 8.12 6.59 21.89 13.80 10.25 21.43 56.29 6.61 3.60 3.74 13 I1_AR2 ActiveIntronRegion 1 1.78 0.00 8.00 3.16 0.14 0.00 0.98 3.55 1.82 2.54 0.00 4.33 0.00 0.00 11.15 5.16 1.22 1.94 0.00 13.21 2.20 0.00 1.85 14 I1_AR4 ActiveIntronRegion 0 10.38 6.12 10.20 6.92 13.93 5.43 11.58 17.31 4.64 10.12 5.07 6.83 8.23 6.96 6.67 13.56 4.50 6.10 6.26 12.97 3.61 0.99 3.40 15 I1_AR5 ActiveIntronRegion 0 12.59 4.13 11.41 11.70 25.25 9.53 20.44 33.08 8.38 17.77 11.14 4.30 5.16 10.62 9.58 17.48 13.01 10.16 8.43 15.03 2.74 2.26 4.54 16 Ix Intron 0 18.27 8.17 16.13 16.31 13.97 4.79 11.43 28.44 6.65 18.87 14.36 5.62 4.82 14.02 15.63 15.52 11.93 21.77 7.67 12.82 9.29 9.62 8.84 17 Ix_SR1 SilentIntronRegion 0 18.42 8.23 16.26 16.44 14.06 4.82 11.52 28.66 6.70 19.02 14.47 5.67 4.86 14.13 15.75 15.64 12.02 21.95 7.72 12.92 9.37 9.70 8.91 18 Ix_AR1 ActiveIntronRegion 0 23.31 20.94 6.12 7.79 16.02 3.95 19.65 12.33 1.76 11.04 1.39 13.84 21.14 1.28 4.21 2.85 8.69 2.20 2.29 9.67 1.58 1.50 4.92 19 E2_Aa NovelBoundary 0 10.52 31.70 7.54 5.39 3.65 0.00 7.68 15.98 4.43 15.69 4.74 7.35 8.28 2.47 0.00 0.00 11.69 2.24 0.00 25.95 6.30 0.00 0.00 20 ER2a ExonRegion 0 16.56 21.66 17.47 14.29 35.23 40.92 20.55 9.46 6.06 26.45 12.58 14.94 17.27 7.70 8.87 16.32 13.92 7.28 3.37 25.04 10.93 5.47 8.59 21 E2_Da NovelBoundary 0 20.45 26.77 19.01 43.25 28.44 18.40 34.67 24.23 8.77 36.51 7.05 6.30 19.64 4.71 0.00 11.62 16.36 12.56 0.00 51.45 5.68 6.12 0.00 22 E2a_E3a KnownJunction 0 0.00 0.00 8.37 7.13 3.57 5.34 2.25 4.44 3.10 14.48 4.90 0.00 6.82 0.00 0.00 11.62 21.04 0.00 0.00 6.52 5.75 0.00 11.35 23 E2a_E4a KnownJunction 0 0.00 3.03 4.76 3.03 0.00 10.79 6.67 0.00 2.58 0.00 7.84 0.00 6.82 4.59 10.01 0.00 0.00 0.00 0.00 2.88 5.75 3.00 0.00 24 Ix_AR2 ActiveIntronRegion 0 15.63 12.20 9.80 6.50 28.20 3.67 11.41 13.16 5.13 11.56 1.93 11.66 6.13 2.37 12.50 2.29 5.33 1.85 6.62 19.97 2.88 1.44 0.23 25 Ix_AR1 ActiveIntronRegion 0 13.76 11.33 8.23 8.18 21.02 3.41 8.61 12.35 4.15 8.27 1.93 21.34 22.11 4.18 7.25 2.97 8.25 3.17 9.56 24.32 3.94 0.15 0.00 26 Ix_AR1 ActiveIntronRegion 0 8.58 5.05 8.18 14.66 10.64 9.50 14.93 8.50 3.36 10.71 0.92 5.31 1.83 3.35 2.23 4.27 5.98 8.92 3.75 20.71 1.73 1.61 5.80 27 Ix_SR5 SilentIntronRegion 0 12.22 2.58 6.83 1.81 10.35 5.33 13.32 2.80 1.05 4.71 0.00 4.52 7.19 2.05 5.99 9.16 5.13 4.53 3.79 8.00 1.83 0.27 5.12 28 Ix_AR4 ActiveIntronRegion 0 9.46 11.29 12.19 6.42 19.22 3.98 8.96 7.94 2.82 13.62 2.94 7.19 8.72 5.90 14.44 11.56 5.97 14.21 1.87 17.27 6.85 3.63 3.15 29 Ix_AR3 ActiveIntronRegion 0 17.97 8.95 12.35 12.69 25.00 3.56 35.31 9.88 2.21 10.61 5.83 3.42 18.90 4.90 4.07 11.31 12.22 17.13 0.00 16.35 1.94 4.76 6.66 30 Ix_SR2 SilentIntronRegion 0 8.02 4.93 10.55 9.57 14.90 6.43 17.16 10.59 5.01 12.71 1.66 6.49 12.65 3.21 5.91 6.97 7.26 7.89 7.91 18.32 5.84 1.84 5.19 31 Ix_AR1 ActiveIntronRegion 0 7.15 8.26 14.24 13.56 12.33 6.43 16.03 8.36 3.21 14.58 1.90 5.33 8.05 3.01 6.47 6.18 8.26 12.28 3.53 13.61 6.58 1.79 6.77 32 E3_Aa NovelBoundary 0 23.71 6.25 9.34 18.95 39.39 13.12 69.07 13.02 6.86 12.68 5.32 5.70 19.80 30.08 8.90 20.51 23.09 24.50 21.08 21.80 14.15 8.63 11.52 33 ER3a ExonRegion 0 10.42 10.81 23.07 21.44 26.85 30.04 23.48 15.24 6.28 28.68 6.70 9.00 15.80 11.59 12.53 13.46 16.27 19.31 10.10 29.46 11.00 5.58 13.94 34 E3_Da KnownBoundary 0 3.56 14.41 21.41 16.81 26.40 36.63 18.90 17.66 1.24 23.34 2.42 0.00 12.66 14.66 17.80 8.46 26.46 19.98 16.85 23.46 8.77 2.27 6.40 35 ER3b ExonRegion 0 0.74 10.02 13.85 12.90 8.49 24.09 10.83 9.09 2.22 15.61 3.13 5.67 9.42 9.02 7.00 3.33 16.24 8.43 5.56 17.90 10.58 1.11 5.13 36 E3_Db NovelBoundary 1 11.11 0.00 23.00 21.28 20.88 41.23 26.72 24.07 3.41 25.71 2.11 0.00 18.83 12.18 42.65 11.45 13.74 18.99 21.74 24.67 5.50 2.82 12.55 37 Ix Intron 0 5.56 2.14 6.72 10.68 9.85 17.35 13.23 5.42 2.90 11.68 4.57 6.23 8.34 4.90 3.45 2.34 9.55 6.76 4.19 21.81 4.62 3.29 3.09 38 Ix_AR1 ActiveIntronRegion 0 5.62 2.16 6.79 10.79 9.95 17.53 13.36 5.47 2.93 11.80 4.62 6.29 8.43 4.95 3.48 2.37 9.63 6.83 4.23 22.04 4.67 3.32 3.12 39 E4_Aa NovelBoundary 0 27.19 33.88 28.77 26.04 8.32 33.05 28.44 21.24 5.35 25.52 9.79 18.46 6.82 2.47 13.35 4.36 9.54 20.52 13.46 21.28 9.14 5.14 12.63 40 ER4a ExonRegion 0 12.53 22.89 17.56 22.09 27.49 27.09 33.58 18.37 6.01 32.63 8.27 24.96 28.27 8.72 12.23 12.92 13.76 9.48 13.28 33.37 7.70 5.48 9.23