Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC003963.1 Gene 0 18.31 4.84 8.34 5.73 19.16 18.52 9.30 21.55 16.37 21.31 15.01 12.68 13.88 16.43 12.72 21.06 13.49 3.78 4.95 10.36 4.62 3.49 3.50 2 499431 Transcript 0 3.21 2.89 3.66 0.00 0.00 4.55 1.99 0.04 1.27 4.69 4.52 3.92 0.00 3.16 3.27 5.44 1.24 0.88 0.00 5.13 0.00 0.00 2.20 3 438044 Transcript 0 5.85 1.08 1.94 2.31 6.60 9.58 2.67 6.05 5.26 6.51 6.29 2.26 3.32 6.02 5.67 7.65 4.86 1.15 0.80 2.39 2.36 0.71 0.98 4 500316 Transcript 0 7.89 1.15 2.19 0.76 5.05 2.20 2.40 3.08 2.56 3.71 4.03 1.17 2.83 5.04 2.57 8.22 7.07 2.20 2.01 2.81 2.91 1.45 1.30 5 ER1a ExonRegion 0 6.41 2.48 2.78 0.00 0.00 6.88 3.97 0.08 0.74 3.04 6.88 2.29 0.00 6.33 2.09 10.88 2.48 0.05 0.00 7.63 0.00 0.00 4.40 6 E1a_E4a KnownJunction 0 0.00 3.29 4.55 0.00 0.00 2.21 0.00 0.00 1.79 6.34 2.16 5.55 0.00 0.00 4.45 0.00 0.00 1.70 0.00 2.62 0.00 0.00 0.00 7 Ix_SR2 SilentIntronRegion 0 1.94 0.69 4.60 3.79 1.43 2.07 1.10 6.77 1.48 8.22 5.76 1.26 0.00 9.74 6.03 7.52 0.61 0.53 1.48 3.64 0.90 1.24 2.27 8 Ix_AR4 ActiveIntronRegion 0 0.00 0.00 3.34 2.23 2.68 6.67 1.56 8.64 0.00 4.90 0.00 0.00 0.00 5.17 12.13 7.57 3.30 0.17 0.87 10.64 0.00 2.08 0.00 9 Ix_AR5 ActiveIntronRegion 0 1.01 0.00 5.42 3.10 5.42 4.31 3.11 7.30 0.71 7.63 1.88 0.00 3.28 8.61 10.66 13.45 1.07 2.63 3.19 11.65 0.00 1.56 0.00 10 Ix Intron 0 8.40 2.09 11.75 8.06 9.89 4.52 3.44 7.41 1.89 8.89 5.16 10.04 8.74 10.00 11.04 15.46 4.97 1.76 2.18 7.28 0.30 1.43 1.40 11 Ix_SR1 SilentIntronRegion 0 8.43 2.09 11.78 8.09 9.91 4.53 3.45 7.43 1.90 8.92 5.17 10.07 8.77 10.03 11.07 15.50 4.98 1.77 2.19 7.30 0.30 1.43 1.41 12 Ix Intron 0 8.58 2.60 3.90 5.63 15.99 5.48 5.09 4.95 4.32 7.29 4.95 0.92 0.00 11.21 10.05 8.88 5.63 0.59 0.68 4.54 1.88 0.89 0.63 13 Ix_SR1 SilentIntronRegion 0 8.64 2.63 3.93 5.68 16.12 5.52 5.13 4.99 4.35 7.35 4.99 0.93 0.00 11.30 10.14 8.95 5.68 0.59 0.69 4.58 1.90 0.90 0.63 14 Ix Intron 0 6.80 0.28 2.18 1.12 5.71 1.94 1.61 4.91 2.20 6.43 7.50 5.76 8.82 9.76 7.43 12.15 4.24 0.97 1.61 2.88 1.62 1.15 2.29 15 Ix_SR1 SilentIntronRegion 0 6.10 0.23 1.78 1.14 6.72 2.20 1.54 5.60 2.28 6.73 7.89 5.78 8.88 10.61 8.03 12.71 5.07 1.03 1.19 2.79 1.32 1.09 2.64 16 Ix_SR2 SilentIntronRegion 0 16.94 0.00 2.04 2.27 6.97 1.71 2.46 2.40 2.74 9.54 12.95 8.63 14.84 12.04 9.82 17.15 4.30 1.20 1.19 3.96 2.87 0.39 0.55 17 Ix_AR2 ActiveIntronRegion 0 6.35 0.76 3.42 0.76 10.03 2.06 1.49 2.90 3.45 1.92 2.90 10.70 14.79 12.36 8.64 10.03 4.95 0.00 5.97 3.19 0.83 0.78 3.30 18 E2_Aa NovelBoundary 0 0.00 0.00 1.30 1.56 0.00 0.00 0.00 2.55 1.79 5.72 15.32 0.00 8.28 0.00 0.00 11.96 0.00 2.03 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 1.56 1.25 0.45 0.34 0.69 3.16 0.48 1.04 1.80 2.42 3.24 2.11 1.47 3.48 1.56 3.14 2.51 0.00 0.02 1.52 1.35 0.00 0.36 20 E2_Ab KnownBoundary 0 0.00 0.00 1.36 4.93 3.82 0.00 0.00 4.03 0.00 5.32 4.84 6.15 5.68 2.47 9.27 4.36 3.65 0.00 0.00 2.56 0.00 0.00 0.00 21 ER2b ExonRegion 0 0.78 4.79 2.45 1.85 2.61 9.23 2.68 8.43 6.98 6.59 1.58 2.71 1.27 2.28 3.32 5.53 1.65 0.04 1.93 3.72 1.48 0.00 0.00 22 E2_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.99 1.53 0.00 0.00 6.01 2.35 8.90 0.00 4.58 0.00 0.00 5.56 0.00 0.00 0.00 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2c ExonRegion 0 2.16 0.59 2.04 0.30 2.60 1.52 1.68 5.64 2.21 4.08 3.95 2.55 1.15 4.11 3.73 6.80 3.11 0.72 0.49 3.01 2.14 0.51 1.00 25 E2_Db NovelBoundary 1 181.00 21.58 80.93 29.43 31.66 34.64 19.30 68.27 56.05 53.99 95.87 44.11 100.32 83.23 133.51 95.87 218.89 13.18 19.39 46.98 51.46 13.84 14.43 26 E2b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 Ix Intron 0 37.57 2.58 17.49 6.58 14.32 12.92 7.65 18.15 10.11 21.43 20.16 9.69 7.54 23.15 23.18 28.90 39.53 15.52 3.59 13.79 19.86 7.63 7.46 28 Ix_AR1 ActiveIntronRegion 0 37.78 2.60 17.59 6.62 14.40 12.99 7.69 18.25 10.17 21.55 20.27 9.74 7.58 23.28 23.31 29.06 39.75 15.60 3.61 13.87 19.97 7.67 7.50 29 Ix Intron 0 21.08 3.66 4.10 5.63 17.43 8.93 10.31 13.70 9.10 13.57 17.08 14.65 16.59 17.01 18.26 26.48 18.79 6.61 3.82 9.72 11.72 4.21 8.58 30 Ix_SR1 SilentIntronRegion 0 21.14 3.67 4.11 5.64 17.48 8.95 10.34 13.74 9.12 13.61 17.13 14.69 16.64 17.06 18.32 26.56 18.85 6.63 3.83 9.75 11.75 4.23 8.60 31 E3_Aa NovelBoundary 0 63.57 3.35 3.02 6.43 37.52 15.05 27.51 13.68 6.63 24.07 22.48 19.51 0.00 23.96 8.90 15.21 15.80 9.00 0.00 19.81 16.49 6.06 8.37 32 ER3a ExonRegion 0 23.68 3.46 6.58 2.28 11.76 6.61 7.21 9.23 7.68 9.99 12.10 3.52 8.49 15.11 7.70 24.67 21.20 6.59 6.04 8.42 8.73 4.35 3.90 33 E3_Da NovelBoundary 0 3.48 0.00 7.92 3.86 20.80 10.39 15.50 6.33 1.79 12.22 9.74 25.06 0.00 25.37 6.30 34.26 26.27 4.77 9.51 15.15 11.68 6.06 0.00 34 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 Ix Intron 0 7.37 0.76 3.41 1.77 6.99 6.62 3.62 5.45 4.81 8.93 6.49 1.43 2.40 8.92 7.20 20.71 13.55 4.45 1.58 6.09 1.92 1.30 3.65 36 Ix_SR1 SilentIntronRegion 0 7.41 0.76 3.42 1.78 7.02 6.65 3.64 5.47 4.83 8.97 6.52 1.43 2.41 8.96 7.23 20.81 13.62 4.47 1.59 6.12 1.93 1.30 3.67 37 E4_Aa NovelBoundary 1 32.15 2.89 66.56 21.94 18.85 25.50 17.27 76.40 48.64 53.86 66.23 12.15 6.49 56.68 57.73 49.56 195.14 19.11 22.21 40.40 36.26 18.92 3.93 38 ER4a ExonRegion 0 16.66 8.28 18.10 13.60 19.34 27.07 11.40 43.94 33.67 39.35 23.80 9.10 14.05 28.11 19.48 23.34 26.13 7.82 4.04 27.87 4.78 7.81 4.54 39 E4_Da NovelBoundary 0 29.34 5.46 7.18 5.06 4.33 18.11 6.18 13.02 5.93 17.68 8.79 6.30 27.11 7.24 19.16 36.57 12.06 9.95 0.00 6.26 6.05 0.00 8.02 40 E4a_E5a KnownJunction 0 2.82 0.00 0.00 5.29 8.66 30.10 0.00 5.87 7.58 10.26 14.79 0.00 0.00 7.12 8.90 4.27 3.74 0.00 0.00 0.00 2.53 0.00 0.00 41 E4a_E5b KnownJunction 0 3.78 14.87 19.84 2.90 20.71 30.38 10.78 40.66 34.90 30.03 15.16 6.30 0.00 9.42 4.45 3.93 11.97 3.81 4.71 17.39 0.00 2.27 4.10 42 E5_Aa NovelBoundary 1 29.93 5.26 46.57 11.29 36.08 35.21 22.96 37.54 27.52 37.02 44.54 17.71 42.21 45.97 37.83 44.26 100.14 11.77 15.81 20.33 37.19 14.21 14.77 43 ER5a ExonRegion 0 22.72 3.56 7.21 5.63 17.75 13.12 11.17 17.72 11.60 15.78 9.49 6.63 13.96 15.41 14.14 24.05 14.97 5.02 3.51 7.42 5.76 3.03 3.55 44 E5_Ab KnownBoundary 0 82.90 9.87 16.38 7.23 60.44 42.25 34.36 28.26 30.90 33.42 26.16 25.06 43.99 22.13 27.32 58.70 17.77 7.21 9.22 29.47 5.07 6.25 7.26 45 ER5b ExonRegion 0 50.58 20.86 31.74 14.86 87.44 68.36 31.99 68.62 46.84 75.47 57.72 28.31 35.64 46.38 28.61 75.67 31.36 4.77 30.32 32.13 12.21 13.83 13.80 46 E5_Da KnownBoundary 0 59.94 28.94 32.23 23.81 106.71 55.99 51.49 78.49 44.10 103.36 55.54 44.71 13.64 63.75 32.26 109.37 35.25 4.52 26.07 32.66 16.25 22.29 7.51 47 ER5c ExonRegion 0 56.92 14.84 24.13 19.26 68.59 68.40 28.36 68.90 57.15 72.28 48.44 53.44 51.77 48.05 38.05 55.14 33.45 9.37 17.20 27.81 9.04 10.36 9.64