Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005829.2 Gene 0 56.25 47.32 135.25 97.98 115.75 102.84 157.73 129.27 66.04 131.84 19.39 40.00 44.52 32.34 51.04 80.30 84.29 93.61 61.34 79.27 22.17 8.85 26.80 2 434041 Transcript 0 5.74 6.11 6.08 6.02 3.84 1.95 5.39 6.29 3.77 8.74 2.16 2.70 2.05 0.49 1.92 1.36 1.72 1.99 1.03 1.44 0.54 0.49 0.12 3 450673 Transcript 0 1.67 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 433919 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 448026 Transcript 0 42.94 33.54 106.68 77.69 93.56 83.67 128.68 104.64 52.61 102.64 14.71 31.87 36.02 26.08 41.83 66.35 69.28 74.88 48.11 64.22 17.37 6.95 21.37 6 IG44_SR42 SilentIntergenicRegion 0 3.81 7.31 21.34 18.00 33.34 36.02 60.38 14.89 16.08 26.35 1.49 6.25 3.97 9.08 10.06 21.00 18.23 37.66 32.33 16.40 11.32 1.07 23.77 7 IG44_AR52 ActiveIntergenicRegion 0 10.39 14.52 33.85 38.35 35.46 38.23 149.49 18.11 33.11 44.08 2.54 16.78 12.19 4.11 10.90 27.06 12.55 31.18 26.37 30.90 6.66 4.49 17.46 8 IG44_AR51 ActiveIntergenicRegion 0 25.14 25.28 29.08 39.95 66.04 50.65 180.65 20.46 28.82 57.24 3.87 10.17 14.40 7.94 14.39 31.47 36.94 29.21 29.59 45.77 5.24 7.54 23.26 9 IG44_SR41 SilentIntergenicRegion 0 13.96 7.12 67.09 65.07 37.10 37.59 108.63 38.14 58.40 88.58 3.20 6.01 12.29 6.31 12.35 19.81 21.23 43.80 29.29 30.59 11.38 4.24 14.33 10 IG44_AR48 ActiveIntergenicRegion 0 2.90 4.79 14.71 15.52 10.42 8.70 32.22 10.86 8.85 23.76 0.64 3.56 1.75 2.14 3.53 3.72 6.18 10.47 5.24 5.89 1.59 0.55 3.29 11 IG44_SR40 SilentIntergenicRegion 0 14.84 10.50 22.55 26.81 20.44 13.58 47.99 23.95 24.45 28.41 1.79 4.63 6.76 1.07 4.17 11.96 5.40 17.02 12.69 13.02 3.64 0.84 9.10 12 IG44_AR47 ActiveIntergenicRegion 0 2.24 4.30 7.45 16.27 9.27 2.49 25.58 16.37 15.32 13.70 0.87 1.18 1.88 0.49 3.28 1.34 1.50 3.59 0.48 3.84 0.66 0.00 0.00 13 IG44_AR46 ActiveIntergenicRegion 0 6.15 1.96 11.26 15.76 28.78 10.62 20.06 6.10 9.81 9.31 0.00 0.00 0.00 0.00 0.00 14.52 9.65 13.88 6.25 4.18 6.49 0.00 2.88 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 2.35 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 0.36 1.11 0.59 3.12 0.00 1.33 2.57 1.02 0.04 0.47 0.28 0.10 0.00 0.06 0.58 2.11 0.00 2.03 0.41 1.08 0.07 0.00 1.82 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 1.04 0.00 13.85 13.80 0.00 3.11 3.43 5.93 2.62 13.15 5.44 9.63 0.00 3.28 0.18 8.37 3.30 8.33 17.62 2.17 3.28 0.00 0.00 20 E3_Ab KnownBoundary 0 0.00 6.05 93.70 17.08 66.64 39.24 14.79 54.92 11.95 105.89 28.90 20.11 6.49 7.18 5.93 12.05 46.00 127.51 16.38 12.27 10.26 2.57 4.27 21 ER3b ExonRegion 0 1.71 1.64 15.36 4.07 0.00 0.06 0.30 6.27 2.83 24.42 4.49 7.40 0.00 1.02 1.68 0.00 5.54 7.36 3.29 0.65 6.29 0.00 0.00 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I3_SR1 SilentIntronRegion 0 4.05 5.32 57.13 19.21 21.56 10.90 30.26 52.34 12.22 43.67 2.53 15.64 16.45 1.62 10.95 11.37 18.26 6.86 5.13 10.49 0.00 0.21 1.77 25 I3_SR3 SilentIntronRegion 0 7.82 6.57 17.66 13.11 17.35 8.22 22.56 25.67 19.44 36.85 1.93 14.40 7.80 8.86 8.64 19.05 12.13 12.53 12.00 19.28 2.34 2.00 1.36 26 I3_SR4 SilentIntronRegion 0 0.64 7.03 58.57 12.33 54.41 18.89 29.19 71.76 21.51 11.96 1.75 22.83 17.31 0.81 0.00 73.77 44.29 39.91 17.41 0.94 4.00 0.00 4.46 27 I3_AR5 ActiveIntronRegion 0 0.71 4.32 20.99 3.42 7.43 4.85 11.68 24.38 10.69 9.48 0.33 3.04 6.05 0.82 0.00 19.01 8.69 21.33 6.97 0.20 1.48 0.00 1.98 28 ER4a ExonRegion 0 0.53 0.75 2.45 0.08 2.90 4.20 0.26 2.99 0.03 4.09 1.11 0.68 0.00 1.87 1.18 0.63 1.02 7.35 1.23 1.20 0.00 0.00 1.17 29 E4_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4b ExonRegion 0 1.67 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E4_Db NovelBoundary 1 205.67 271.33 552.05 460.68 669.44 326.23 759.64 748.25 364.26 740.40 152.09 214.87 230.50 313.26 112.00 335.64 544.18 284.25 199.25 374.17 91.74 63.74 56.17 33 Ix_AR3 ActiveIntronRegion 0 0.62 0.00 1.65 2.41 0.00 2.43 3.02 4.18 0.80 3.53 14.04 30.88 26.31 4.05 1.51 1.79 5.35 1.24 1.24 3.60 0.00 0.00 1.51 34 Ix_AR2 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 16.96 14.56 1.66 0.00 0.00 14.66 3.79 0.00 0.74 0.00 2.97 0.00 0.00 0.00 2.13 0.00 0.00 3.55 35 Ix Intron 0 11.03 10.97 56.48 21.04 29.29 49.42 65.40 34.31 22.98 69.04 17.28 35.37 23.30 11.65 9.27 69.65 80.41 48.87 26.13 27.03 8.22 3.66 12.59 36 Ix_AR1 ActiveIntronRegion 0 15.23 15.44 80.15 29.68 41.34 70.27 91.76 48.50 32.39 97.82 21.80 41.20 26.70 16.52 13.19 85.57 106.21 69.12 36.35 38.29 11.70 5.12 17.92 37 Ix_SR1 SilentIntronRegion 0 2.96 17.05 0.00 0.00 14.95 34.59 39.65 0.00 0.00 0.00 4.02 34.34 56.15 12.66 25.12 20.72 6.87 3.87 4.45 13.35 1.54 2.91 2.05 38 Ix_AR2 ActiveIntronRegion 0 0.57 4.75 1.24 0.00 23.65 54.49 80.51 0.56 0.00 1.94 1.33 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 1.47 0.00 0.00 0.00 39 ER5a ExonRegion 0 85.88 67.09 213.36 155.38 187.12 167.35 257.37 209.28 105.22 205.28 29.42 63.74 72.03 52.16 83.66 132.69 138.56 149.77 96.22 128.44 34.74 13.90 42.74 40 E5_Da NovelBoundary 1 68.60 116.95 71.38 174.90 160.36 87.28 332.59 147.50 106.86 199.40 11.37 31.21 86.68 30.08 47.35 96.30 8.60 79.76 54.12 111.47 5.00 5.63 39.35 41 Ix Intron 0 3.15 3.20 11.99 20.62 6.64 5.56 9.86 8.74 2.18 22.06 1.01 2.37 2.47 2.10 3.24 5.41 3.46 8.16 5.54 11.85 1.15 0.86 0.00 42 Ix_SR1 SilentIntronRegion 0 3.17 3.22 12.06 20.74 6.68 5.60 9.92 8.79 2.20 22.19 1.02 2.38 2.49 2.12 3.26 5.44 3.48 8.21 5.57 11.93 1.16 0.87 0.00 43 Ix_AR1 ActiveIntronRegion 0 8.16 11.66 15.27 17.35 10.78 5.12 42.99 25.94 6.15 10.46 2.77 3.81 8.79 0.98 5.60 6.51 9.65 2.62 1.85 9.49 2.36 0.74 3.14 44 ER6a ExonRegion 0 73.40 131.05 173.12 108.61 84.86 67.59 88.03 84.07 73.41 200.02 29.94 27.50 29.80 29.97 29.06 30.30 39.44 99.33 93.98 66.48 31.19 14.06 32.72 45 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER6b ExonRegion 0 0.40 3.10 10.27 11.42 0.00 0.00 2.65 8.72 7.23 21.79 3.87 2.47 0.67 1.16 5.11 1.56 0.94 7.04 1.52 0.51 0.00 1.29 0.00 47 ER7a ExonRegion 0 22.56 21.34 14.04 12.65 15.36 7.82 18.90 16.43 7.85 13.18 4.77 8.31 7.51 0.81 2.56 3.90 5.95 0.90 2.59 5.23 2.16 0.68 0.48