Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005829.3 Gene 0 0.24 0.68 5.11 0.68 11.67 11.69 230.11 9.79 74.52 6.12 3.46 3.79 2.59 0.15 0.32 5.65 5.91 65.09 49.52 1.19 23.16 0.00 73.57 2 451529 Transcript 0 0.09 0.34 1.88 0.26 4.59 4.57 88.32 3.59 29.54 2.71 1.27 1.60 0.96 0.06 0.12 2.22 2.33 25.60 19.44 0.44 9.20 0.00 29.31 3 IG43 Intergenic 0 0.08 0.18 7.25 0.58 6.58 7.05 109.18 6.92 57.00 5.36 1.55 2.36 3.85 0.17 0.26 5.61 4.17 78.33 36.48 0.64 15.38 0.04 51.87 4 IG43_SR1 SilentIntergenicRegion 0 0.08 0.18 7.26 0.58 6.58 7.06 109.26 6.93 57.03 5.36 1.55 2.36 3.85 0.17 0.26 5.62 4.18 78.39 36.50 0.65 15.39 0.04 51.91 5 ER1a ExonRegion 0 0.62 0.00 8.03 1.79 10.18 13.37 338.33 12.83 119.15 4.01 5.10 3.81 4.53 0.39 0.85 9.58 9.68 70.37 60.69 1.87 24.49 0.00 87.74 6 E1_Da NovelBoundary 0 0.00 0.00 12.54 0.00 33.02 13.69 539.62 13.31 223.41 9.24 0.00 6.15 0.00 0.00 0.00 3.42 8.98 106.66 86.50 0.00 31.32 0.00 137.61 7 I1 Intron 0 0.64 0.32 2.79 2.46 11.43 6.46 78.02 7.86 50.29 8.31 1.48 1.09 4.13 0.00 1.50 3.18 3.01 10.70 13.60 4.53 3.36 0.63 19.28 8 I1_AR1 ActiveIntronRegion 0 0.48 0.39 2.97 3.07 11.17 4.04 51.61 7.59 44.26 9.22 1.49 0.71 4.06 0.00 1.48 3.69 2.64 8.94 12.52 5.64 2.64 0.79 17.30 9 I1_SR1 SilentIntronRegion 0 1.32 0.00 2.11 0.00 12.88 16.82 190.86 9.24 77.08 4.77 1.48 2.71 4.47 0.00 1.63 1.11 4.69 18.39 18.56 0.00 6.51 0.00 28.17 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 1.61 2.20 2.65 0.00 4.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 1.76 0.00 2.94 12 I2 Intron 0 0.97 0.31 5.56 1.24 5.30 5.30 59.26 9.41 35.31 8.85 2.06 1.09 3.19 0.00 0.31 2.71 0.00 18.75 6.30 0.97 4.03 0.00 24.14 13 I2_SR1 SilentIntronRegion 0 0.97 0.31 5.59 1.24 5.32 5.34 59.61 9.46 35.50 8.90 2.07 1.09 3.21 0.00 0.31 2.73 0.00 18.85 6.32 0.98 4.04 0.00 24.23 14 E3_Aa NovelBoundary 0 0.00 8.88 8.60 1.33 16.72 13.23 328.22 23.74 214.12 20.74 2.58 17.56 6.82 0.00 0.00 7.18 17.48 228.70 63.25 0.00 62.77 0.00 128.39 15 ER3a ExonRegion 0 0.00 1.14 5.12 0.00 18.72 16.44 232.23 12.27 63.91 9.09 3.79 4.85 2.16 0.00 0.00 4.16 4.62 88.95 58.02 1.19 31.48 0.00 88.84 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.73 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.80 18 E5_Aa NovelBoundary 0 0.00 0.00 5.32 1.47 19.69 7.89 482.08 15.98 163.97 18.56 0.00 5.70 0.00 0.00 0.00 19.65 9.16 103.92 90.45 2.75 32.31 0.00 117.89 19 ER5a ExonRegion 0 0.00 1.23 0.00 0.00 1.62 0.00 45.01 0.00 18.94 5.11 0.00 2.11 0.00 0.00 0.00 1.80 2.00 14.54 17.41 0.00 6.69 0.00 24.86 20 IG42 Intergenic 0 0.78 1.89 5.67 2.39 10.09 6.38 54.62 6.26 21.52 6.84 1.52 2.28 2.21 0.64 0.64 3.12 2.29 21.42 15.51 2.29 5.27 0.47 15.64 21 IG42_SR6 SilentIntergenicRegion 0 1.69 5.28 10.36 7.14 9.32 7.19 135.27 9.43 70.95 12.97 2.68 3.54 2.89 2.57 1.60 6.89 2.59 94.49 57.13 8.76 24.10 1.83 69.50 22 IG42_AR5 ActiveIntergenicRegion 0 0.27 0.26 5.97 1.28 7.36 2.26 55.67 6.59 16.96 10.99 1.78 2.78 5.21 0.00 0.22 1.12 0.57 5.34 9.91 0.27 0.42 0.00 3.53 23 IG42_SR5 SilentIntergenicRegion 0 5.12 9.09 3.17 5.09 6.82 4.53 37.83 7.40 13.01 14.23 1.52 4.48 4.69 1.71 1.48 2.32 2.38 4.25 8.36 3.53 0.78 1.73 2.32 24 IG42_AR4 ActiveIntergenicRegion 0 1.33 1.28 3.56 0.44 20.81 12.44 30.79 5.60 13.98 3.05 7.65 6.73 0.77 0.58 1.73 4.23 10.43 7.50 13.49 2.67 3.02 1.31 8.05 25 IG42_AR3 ActiveIntergenicRegion 0 0.00 1.00 9.44 0.77 40.84 13.58 52.89 16.13 9.41 8.05 5.07 2.08 8.49 0.40 1.06 5.36 10.52 5.15 7.21 0.35 1.19 0.00 5.20 26 IG42_SR3 SilentIntergenicRegion 0 0.00 0.00 15.48 2.04 16.75 6.38 36.85 27.85 18.85 6.63 1.72 2.16 3.56 0.21 0.00 3.80 4.71 10.85 13.33 0.00 1.43 0.00 3.26 27 IG42_SR2 SilentIntergenicRegion 0 0.31 0.30 9.74 0.64 21.79 15.27 59.48 12.16 10.71 6.44 3.98 2.86 5.34 0.20 0.30 6.49 4.48 10.93 9.37 0.41 2.57 0.00 3.43 28 IG42_AR1 ActiveIntergenicRegion 0 0.00 0.00 8.16 0.29 22.10 18.41 62.57 6.08 13.20 4.27 3.33 3.96 1.63 0.00 0.00 4.68 6.15 8.24 6.94 0.83 3.22 0.00 3.61 29 IG42_SR1 SilentIntergenicRegion 0 0.25 0.71 3.72 1.34 6.19 4.23 33.21 3.77 11.14 4.26 0.23 1.24 0.88 0.13 0.32 1.65 0.83 7.11 6.41 0.87 1.48 0.05 5.54