Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLEKHM1 Gene 0 40.58 17.91 82.48 37.84 41.88 60.54 38.49 109.12 86.26 124.18 63.37 20.95 35.28 73.32 71.05 81.79 58.22 41.72 32.32 45.86 85.65 51.57 66.82 2 430334 Transcript 0 33.21 11.86 51.13 20.10 23.86 41.93 23.58 76.25 50.22 73.43 45.83 12.66 21.26 48.68 57.94 50.28 38.06 30.67 15.33 39.46 56.52 37.84 39.20 3 446609 Transcript 0 5.77 3.17 4.98 2.64 4.51 1.67 6.35 8.72 2.87 6.03 0.50 1.78 3.01 0.73 2.46 3.09 3.84 1.32 2.07 9.65 2.86 0.81 2.67 4 IG32_AR2 ActiveIntergenicRegion 0 1.76 2.71 15.95 9.95 11.53 4.55 9.24 30.97 8.36 24.67 0.40 2.04 0.64 1.16 1.31 1.98 0.55 3.97 3.19 13.34 0.40 0.20 0.00 5 IG32_SR1 SilentIntergenicRegion 0 0.68 1.30 9.81 3.70 3.92 3.18 2.19 12.25 6.17 16.83 0.57 0.00 0.00 0.29 0.47 0.92 0.17 2.43 1.48 5.03 0.10 0.47 0.15 6 ER1a ExonRegion 1 20.53 10.67 1.57 1.35 8.80 24.88 21.91 3.16 3.52 6.82 32.86 0.00 5.95 17.80 36.25 16.46 7.21 6.54 6.95 11.12 28.70 11.22 11.27 7 E1a_E3a KnownJunction 0 13.63 5.53 0.00 8.09 0.00 25.72 5.65 4.64 9.17 20.42 0.00 0.00 7.79 2.47 5.93 0.00 0.00 0.00 4.71 5.50 5.87 2.45 0.00 8 E2_Aa NovelBoundary 0 6.74 15.26 28.92 18.98 11.97 21.07 40.98 27.03 28.10 19.26 8.05 6.30 19.48 2.12 4.45 7.69 0.00 12.52 4.80 49.34 2.35 2.94 15.37 9 ER2a ExonRegion 0 17.30 9.50 14.93 7.92 13.54 5.00 19.06 26.15 8.60 18.09 1.51 5.35 9.02 2.18 7.37 9.26 11.52 3.95 6.20 28.94 8.58 2.43 8.00 10 E2_Da NovelBoundary 0 34.30 35.72 30.57 35.69 35.82 32.71 39.75 43.21 37.12 19.42 7.63 30.61 26.13 2.47 0.00 34.44 4.49 17.45 13.27 38.61 5.19 5.45 23.99 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 1 6.04 0.50 21.45 12.22 4.42 7.85 5.27 35.68 29.48 54.88 37.16 5.11 2.27 7.85 13.20 13.12 22.66 11.36 5.98 9.97 34.91 9.43 9.70 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER4a ExonRegion 0 14.79 11.77 56.20 29.95 29.48 60.58 32.79 90.25 73.61 121.53 83.50 23.04 30.81 59.04 58.42 85.02 72.45 62.75 30.30 73.06 65.45 51.98 45.59 16 E4_Da NovelBoundary 0 13.26 0.00 26.85 4.13 14.60 19.42 12.54 30.27 17.27 34.28 6.95 0.00 0.00 7.18 4.45 4.19 0.00 4.39 9.41 22.75 5.50 2.76 12.38 17 E4a_E5a KnownJunction 0 82.83 15.46 53.69 9.66 33.02 61.10 20.89 165.45 46.79 60.20 142.35 23.71 60.06 100.36 101.86 69.55 90.79 55.80 8.66 98.18 80.68 78.69 43.45 18 ER5a ExonRegion 0 36.92 19.92 81.36 47.93 37.85 67.68 50.57 109.58 95.43 156.86 98.61 36.26 54.96 104.20 78.94 124.88 83.36 72.56 48.90 61.62 109.74 67.01 91.02 19 E5_Da NovelBoundary 0 37.56 0.00 36.52 15.98 0.00 7.50 21.07 12.12 11.34 10.80 2.32 0.00 0.00 7.42 23.49 16.06 4.77 18.61 30.78 9.40 4.88 3.06 4.27 20 E5a_E6a KnownJunction 0 42.23 8.62 98.52 30.60 77.67 57.52 25.53 103.10 79.80 108.12 132.82 42.91 56.49 87.70 59.58 124.24 71.90 89.91 49.88 31.19 85.87 47.27 116.01 21 E5a_E7a NovelJunction 0 60.53 60.78 61.06 45.22 48.05 73.42 37.27 138.38 196.76 112.01 14.53 6.30 25.65 32.73 40.79 46.23 16.36 38.59 56.28 61.74 74.75 59.52 58.22 22 I5 Intron 0 13.65 8.65 17.91 22.65 14.10 18.15 15.84 21.54 18.15 16.15 5.18 7.25 6.58 11.14 15.00 17.45 12.61 9.23 6.81 13.96 10.20 4.26 11.84 23 I5_AR1 ActiveIntronRegion 0 16.20 13.49 16.96 26.30 16.05 18.05 18.21 19.55 16.97 11.71 6.73 7.17 8.80 12.89 13.08 14.50 20.39 16.33 6.14 16.17 12.10 4.34 16.41 24 I5_AR2 ActiveIntronRegion 0 15.79 12.71 29.31 23.82 31.83 40.04 19.36 20.99 27.56 9.58 11.23 9.83 9.97 17.26 10.88 28.48 11.76 18.63 5.64 17.91 6.89 5.86 16.89 25 I5_SR2 SilentIntronRegion 0 16.15 8.78 19.60 26.22 15.78 22.21 19.19 25.24 21.69 20.56 5.12 9.37 6.15 13.52 19.47 20.47 13.65 8.79 8.64 15.96 11.13 5.38 12.81 26 I5_AR3 ActiveIntronRegion 0 12.80 11.60 20.76 27.99 16.29 24.57 15.76 30.58 23.89 23.35 7.89 5.20 9.30 10.48 18.51 29.37 14.92 15.17 9.62 18.69 15.35 3.13 18.31 27 E6_Aa NovelBoundary 0 23.78 19.93 16.20 28.97 20.63 41.62 18.11 31.38 36.92 15.93 12.37 11.40 0.00 4.83 16.44 20.17 13.74 18.49 9.60 20.26 2.78 0.00 32.69 28 ER6a ExonRegion 0 35.87 16.24 83.87 36.29 48.94 70.33 45.33 112.57 69.17 120.62 125.46 45.84 82.07 95.20 75.98 117.67 91.16 59.24 40.02 54.74 101.20 51.62 86.00 29 E6_Da NovelBoundary 0 6.45 6.05 13.07 16.75 7.72 28.45 23.41 21.44 16.03 21.22 7.84 6.30 0.00 17.54 8.90 13.07 8.79 16.50 4.80 20.01 9.39 2.57 8.54 30 E6a_E7a KnownJunction 1 12.82 8.35 60.17 21.24 81.66 60.08 60.77 84.20 47.77 106.05 106.76 6.30 46.10 64.81 26.58 105.36 96.40 33.12 34.82 29.72 56.16 39.13 46.52 31 I6 Intron 0 10.07 6.70 7.65 10.47 9.96 16.54 14.12 13.09 8.17 6.67 6.71 4.48 10.71 5.07 8.39 9.79 8.51 6.18 3.88 8.22 7.89 1.79 8.41 32 I6_AR1 ActiveIntronRegion 0 3.35 6.94 9.09 14.96 9.75 17.65 17.30 14.07 14.74 11.52 17.18 4.59 12.14 8.12 13.11 18.15 9.00 13.84 9.94 13.08 9.65 1.26 10.70 33 I6_SR1 SilentIntronRegion 0 4.16 9.52 1.62 1.19 7.28 17.02 16.19 0.00 1.01 0.47 9.02 4.56 12.66 4.87 6.85 8.98 2.24 1.37 1.87 6.33 6.42 2.13 3.99 34 I6_AR2 ActiveIntronRegion 0 17.99 16.01 15.23 25.58 13.06 39.55 21.88 35.28 15.93 11.30 13.39 8.78 16.98 12.86 16.01 18.25 15.59 10.84 6.52 13.40 10.75 3.94 12.94 35 E7_Aa NovelBoundary 0 27.78 2.83 7.81 10.62 25.55 2.90 18.50 7.02 3.39 4.38 2.53 0.00 6.82 7.36 0.00 7.69 4.30 0.00 0.00 17.19 10.69 0.00 26.38 36 ER7a ExonRegion 0 75.70 47.04 138.61 76.70 98.33 116.44 85.55 200.70 264.95 206.19 105.10 29.95 68.67 133.54 88.66 137.62 91.66 72.67 95.31 90.17 147.14 105.12 136.15 37 E7_Da NovelBoundary 0 20.37 9.34 13.07 14.68 32.60 0.00 10.64 10.60 10.24 11.82 4.26 6.00 0.00 9.77 0.00 4.36 4.30 4.68 9.41 17.13 11.31 2.57 7.26 38 E7a_E8a KnownJunction 0 65.27 50.39 95.56 29.10 44.06 64.85 36.13 143.31 175.37 154.13 78.44 7.35 38.15 60.69 67.99 77.33 71.90 57.04 27.77 53.63 102.80 79.60 34.49 39 Ix Intron 0 13.74 8.80 16.29 14.37 18.08 9.10 18.88 20.27 14.77 13.99 4.29 4.55 5.97 4.33 6.21 9.10 5.23 4.12 5.22 5.95 11.28 3.85 10.08 40 Ix_AR3 ActiveIntronRegion 0 15.46 14.36 23.56 21.26 23.12 12.50 23.70 30.42 19.94 18.51 5.41 5.28 9.91 4.76 6.31 7.24 6.43 5.37 7.76 6.47 10.72 5.08 13.58 41 Ix_AR1 ActiveIntronRegion 0 13.28 4.86 11.46 9.71 15.20 6.94 16.22 13.34 11.55 11.24 3.66 4.26 3.16 4.27 6.54 11.25 4.60 3.39 3.49 5.93 12.50 3.11 7.90 42 Ix Intron 0 11.99 0.61 12.53 3.03 3.19 2.73 4.74 7.68 4.94 11.72 2.88 0.00 1.15 1.20 6.36 3.55 4.92 0.55 4.75 4.44 11.16 0.62 7.88 43 Ix_AR1 ActiveIntronRegion 0 12.06 0.61 12.59 3.05 3.21 2.75 4.77 7.72 4.97 11.79 2.90 0.00 1.16 1.19 6.40 3.55 4.95 0.55 4.78 4.47 11.23 0.63 7.91 44 E8_Aa NovelBoundary 0 6.52 0.00 28.53 14.65 0.00 2.90 6.05 17.62 12.73 11.44 5.16 0.00 6.82 4.77 0.00 4.36 4.77 3.52 4.80 0.00 8.65 8.88 8.28 45 ER8a ExonRegion 0 21.45 10.93 55.47 26.19 19.88 43.20 23.88 84.92 70.50 104.39 44.92 10.00 13.30 54.46 40.97 57.49 39.57 30.87 15.66 34.92 69.94 28.44 44.83 46 E8_Da NovelBoundary 0 39.34 9.93 24.66 13.92 21.22 2.84 14.75 29.08 24.36 20.04 15.64 12.60 6.82 18.78 39.31 25.04 3.83 15.79 13.65 11.19 17.42 11.88 7.77 47 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER9a ExonRegion 0 21.28 6.34 45.83 18.67 12.13 30.84 14.21 60.26 52.49 93.23 26.69 4.60 12.05 30.18 20.09 23.19 33.78 17.31 7.57 18.45 44.47 15.64 17.28 49 E9_Da NovelBoundary 0 3.11 2.89 4.32 1.53 23.94 0.00 8.35 2.46 5.79 6.47 0.00 0.00 0.00 7.06 4.94 4.02 9.54 1.95 0.00 0.00 8.77 0.00 3.84 50 E9a_E10a KnownJunction 0 3.41 5.46 51.57 22.34 3.82 21.29 22.61 92.66 56.63 91.41 26.16 0.00 6.82 29.73 10.14 29.65 33.66 28.81 8.19 11.57 42.56 14.70 33.29 51 E10_Aa NovelBoundary 0 21.78 12.23 28.12 3.50 24.87 18.06 19.87 27.15 19.59 17.30 2.58 0.00 8.28 7.24 18.17 19.82 14.31 14.92 8.47 11.89 19.65 6.06 23.47 52 ER10a ExonRegion 0 28.90 15.02 103.18 29.87 37.53 57.18 32.58 134.72 80.11 149.60 57.51 16.31 31.86 79.58 58.32 87.05 53.78 50.62 30.69 38.90 89.16 39.95 72.21 53 E10a_E11a KnownJunction 0 33.27 15.98 178.50 33.73 67.49 81.60 77.99 193.46 122.60 206.43 77.44 18.61 26.30 122.90 119.66 130.05 93.50 53.35 49.70 53.56 87.97 49.54 93.13 54 E11_Aa NovelBoundary 0 19.93 2.76 24.10 6.09 23.94 16.24 16.96 30.39 9.26 24.69 2.26 6.60 6.82 9.30 9.77 20.34 12.72 2.32 0.00 11.57 14.83 3.12 12.38 55 ER11a ExonRegion 1 43.92 16.94 158.61 35.61 62.00 103.24 60.67 187.43 134.36 203.11 113.23 38.63 18.69 123.94 103.31 124.13 93.82 65.48 43.05 66.82 152.33 75.30 87.00 56 E11_Da NovelBoundary 0 25.86 0.00 6.86 7.29 3.74 5.74 2.25 4.23 4.69 1.53 0.00 0.00 0.00 0.00 4.45 0.00 0.00 8.37 0.00 3.20 3.15 5.88 4.35 57 E11a_E12a KnownJunction 0 61.49 9.67 149.31 42.79 67.91 122.54 41.20 176.29 129.69 180.92 89.29 31.21 20.29 100.65 86.16 122.36 82.09 66.12 43.58 88.14 129.11 60.93 99.36 58 ER12a ExonRegion 0 63.40 13.59 136.85 46.09 69.20 92.19 47.24 173.24 122.89 169.01 85.49 39.36 47.11 106.45 94.55 121.45 75.62 56.94 47.93 74.56 134.73 80.03 96.91 59 ER12b ExonRegion 0 55.42 19.54 145.74 55.15 55.97 78.18 47.25 176.73 117.29 186.78 70.74 27.50 44.07 91.09 112.66 112.83 69.44 61.97 35.34 57.01 126.36 72.16 97.73 60 E12b_E13a KnownJunction 0 52.23 19.08 102.21 32.36 30.48 57.07 41.38 123.14 112.44 132.32 27.69 19.36 6.82 87.82 110.51 87.75 43.95 55.13 19.01 66.09 110.21 58.91 82.89 61 ER13a ExonRegion 0 59.45 21.96 100.72 44.34 54.30 69.86 42.34 122.27 88.72 130.52 52.10 20.37 35.81 78.46 92.93 80.95 58.72 33.83 33.02 44.14 91.45 61.02 71.90 62 E13_Ab KnownBoundary 0 42.67 9.41 112.06 55.50 64.35 40.43 8.13 142.40 80.87 131.30 48.75 0.00 14.45 60.27 113.60 74.42 45.63 32.21 21.55 35.54 68.88 63.50 42.85 63 ER13b ExonRegion 1 22.42 9.32 53.72 24.39 31.18 25.04 16.31 75.68 37.42 59.24 26.79 3.51 12.30 24.10 65.16 40.11 19.79 14.78 13.19 15.19 33.37 38.84 41.57 64 ER13c ExonRegion 0 0.00 2.71 0.00 0.00 2.68 0.00 0.00 0.58 0.41 2.29 3.22 0.00 0.00 1.08 2.90 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 65 IG31_SR2 SilentIntergenicRegion 0 4.50 1.81 9.93 3.41 12.30 6.71 4.65 15.79 10.73 8.28 0.19 0.74 0.65 0.33 0.91 2.50 1.79 3.27 3.78 5.57 3.48 0.72 2.18