Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC126544.3 Gene 0 55.98 165.79 282.60 225.35 203.09 150.73 228.51 175.62 130.37 305.64 66.54 38.39 28.53 61.96 61.33 47.56 51.86 144.97 146.36 184.59 46.54 18.34 80.73 2 376914 Transcript 1 148.47 347.82 83.64 85.31 304.24 323.63 624.91 96.86 61.85 164.26 63.21 0.00 0.00 37.17 57.17 67.59 72.74 123.73 127.77 170.76 33.46 18.91 136.93 3 455565 Transcript 0 23.15 64.60 140.01 118.19 88.21 57.20 76.89 90.29 81.06 156.38 29.27 20.75 12.66 31.65 30.45 33.52 20.43 82.40 82.98 88.27 20.13 8.34 36.80 4 ER1a ExonRegion 1 148.47 347.82 83.64 85.31 304.24 323.63 624.91 96.86 61.85 164.26 63.21 0.00 0.00 37.17 57.17 67.59 72.74 123.73 127.77 170.76 33.46 18.91 136.93 5 ER2a ExonRegion 0 4.70 6.98 13.03 10.32 7.36 7.71 9.20 15.36 21.61 36.74 5.06 0.71 0.76 9.85 4.73 8.82 3.42 25.76 30.37 17.95 8.04 1.50 6.95 6 E2a_E3a KnownJunction 1 10.08 20.59 44.11 66.69 35.57 10.11 15.24 57.87 79.86 95.23 7.32 12.15 0.00 16.30 18.05 39.22 0.00 65.70 67.67 53.18 8.46 3.12 16.82 7 ER3a ExonRegion 0 206.47 475.51 296.95 298.26 420.63 413.10 773.63 299.89 253.03 558.94 126.46 45.69 26.50 87.47 78.75 94.15 107.75 278.33 269.92 366.78 82.28 36.60 204.25 8 E3a_E4a KnownJunction 1 36.67 89.26 350.87 302.76 89.05 79.84 67.39 252.44 213.11 457.89 212.79 18.31 13.64 39.20 43.88 39.73 153.62 74.86 123.49 326.94 103.54 11.82 33.89 9 I3 Intron 0 4.86 6.77 17.99 17.18 14.82 6.10 47.47 12.05 9.68 20.57 0.81 6.82 7.86 1.21 4.72 5.06 4.75 4.48 6.76 19.55 1.47 0.39 5.63 10 I3_SR1 SilentIntronRegion 0 3.74 8.45 15.38 13.96 9.24 6.14 41.48 13.54 8.85 25.01 0.00 13.45 11.54 0.53 3.67 4.40 2.68 2.87 6.22 24.29 0.61 0.29 8.67 11 I3_AR1 ActiveIntronRegion 0 3.68 7.86 12.89 19.55 15.78 6.66 53.21 13.55 13.66 26.57 0.68 10.50 12.71 1.58 3.94 4.97 7.99 7.78 8.35 25.96 1.67 0.29 7.88 12 I3_SR2 SilentIntronRegion 0 5.27 6.30 19.44 17.15 15.41 5.98 47.14 11.53 8.97 18.69 0.96 5.11 6.32 1.24 5.03 5.17 4.36 4.01 6.50 17.53 1.55 0.43 4.72 13 ER4a ExonRegion 0 81.67 317.87 387.08 372.95 317.34 257.47 443.38 282.87 221.62 442.64 97.33 67.52 37.67 76.58 93.37 64.06 72.54 205.78 228.70 330.31 84.59 25.33 120.61 14 E4_Da NovelBoundary 0 52.53 96.89 180.77 145.80 43.55 10.85 75.96 117.47 58.59 104.44 19.74 24.76 25.32 13.13 22.75 11.79 12.16 80.30 61.08 100.03 17.73 0.00 68.89 15 E4a_E5a KnownJunction 0 218.48 417.69 316.16 294.50 337.18 247.93 284.54 177.85 174.97 393.61 77.39 57.02 42.53 84.41 93.08 33.75 56.19 187.20 219.11 321.70 64.43 24.37 47.80 16 I4 Intron 0 15.17 42.31 48.97 43.75 60.00 29.28 73.53 30.58 11.60 32.81 6.79 9.44 21.02 12.28 7.50 8.28 9.66 19.53 13.52 33.36 3.22 1.53 10.75 17 I4_SR1 SilentIntronRegion 0 15.22 42.42 49.10 43.88 60.14 29.35 73.71 30.67 11.63 32.91 6.81 9.47 21.08 12.31 7.52 8.30 9.68 19.59 13.56 33.46 3.23 1.53 10.78 18 Ix Intron 0 12.57 22.88 43.62 51.60 43.46 21.67 56.81 29.63 17.68 29.16 6.96 7.42 10.65 9.01 7.72 7.14 7.51 17.44 13.89 43.44 3.34 1.45 13.55 19 Ix_SR1 SilentIntronRegion 0 25.70 62.79 77.92 106.40 69.62 35.63 114.37 35.74 21.71 32.02 8.72 13.96 21.73 11.79 8.94 11.34 6.87 29.36 23.21 34.68 3.82 1.45 12.23 20 Ix_AR1 ActiveIntronRegion 0 11.05 18.77 43.09 54.99 49.76 23.05 57.65 39.52 21.16 33.29 10.45 6.25 8.89 12.61 12.80 11.04 11.76 18.37 16.17 65.68 5.30 1.69 18.75 21 Ix_SR2 SilentIntronRegion 0 11.58 11.67 42.40 36.14 36.47 20.41 41.36 25.86 18.39 34.76 4.36 7.43 10.85 5.95 3.18 2.56 5.61 15.36 10.59 34.98 1.95 1.77 13.46 22 ER5a ExonRegion 0 56.03 166.74 343.41 253.04 245.64 163.08 236.64 211.64 145.41 384.92 79.94 40.28 35.91 86.42 82.54 55.43 62.79 179.33 182.03 217.58 63.00 22.89 89.91 23 E5_Da KnownBoundary 0 63.72 174.18 27.79 29.47 571.82 169.05 320.67 27.40 9.64 35.59 35.90 47.87 46.91 78.70 104.46 37.26 44.60 20.73 108.61 47.04 7.48 5.08 63.85 24 ER5b ExonRegion 0 54.68 166.24 362.87 277.56 221.69 153.80 206.24 197.62 141.71 337.18 75.45 49.38 37.21 68.78 68.56 52.52 57.87 155.74 150.91 193.67 43.88 20.39 86.64 25 IG35 Intergenic 0 11.73 52.32 103.34 130.74 112.52 88.21 100.92 97.45 79.08 152.69 12.97 12.63 16.10 13.20 11.19 10.13 10.74 63.86 46.98 71.40 15.80 7.95 26.58 26 IG35_SR1 SilentIntergenicRegion 0 4.99 26.38 29.61 24.55 80.06 43.52 62.06 37.59 23.33 82.38 6.83 9.91 10.61 7.18 5.55 1.75 4.87 2.31 19.71 26.33 2.59 11.67 5.19 27 IG35_AR2 ActiveIntergenicRegion 0 4.85 17.37 54.78 62.75 47.61 40.19 74.64 60.57 46.01 58.64 6.93 1.98 2.15 10.22 14.63 7.55 6.46 26.72 23.23 58.78 9.46 3.91 23.74 28 IG35_AR3 ActiveIntergenicRegion 0 15.20 59.31 197.68 255.98 170.51 163.22 169.46 201.17 163.18 277.50 28.28 21.30 26.71 23.08 19.58 20.31 23.09 129.34 79.55 158.05 27.95 8.47 55.82 29 IG35_SR2 SilentIntergenicRegion 0 13.29 25.90 68.84 70.01 68.87 51.75 62.74 46.21 35.64 76.33 5.12 12.39 9.88 12.87 7.09 10.50 4.14 56.19 38.28 47.04 9.79 5.24 19.30 30 IG35_AR4 ActiveIntergenicRegion 0 17.21 93.41 138.04 193.54 131.13 103.47 113.01 113.65 102.19 181.12 12.23 10.13 18.36 13.15 12.90 12.36 11.34 93.89 60.49 69.25 25.51 4.52 32.94