Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NBR2 Gene 0 57.05 34.62 69.01 84.20 74.14 48.71 49.32 119.34 58.70 85.76 18.44 25.47 48.90 41.91 39.77 40.60 25.68 30.53 39.72 78.86 24.25 12.73 19.75 2 464237 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 393678 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 460115 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 356906 Transcript 0 39.07 25.01 32.45 18.54 50.89 20.21 27.83 39.51 17.24 30.12 10.13 19.83 31.24 28.71 26.92 15.75 18.49 7.35 18.60 41.19 12.47 7.08 7.52 6 467245 Transcript 0 11.43 14.42 17.73 16.73 17.49 12.11 16.49 30.33 17.55 25.54 5.41 13.67 19.53 9.27 12.20 15.57 9.10 9.48 15.69 23.48 5.91 3.57 7.21 7 ER1a ExonRegion 0 34.42 4.82 4.64 4.02 19.86 20.94 18.54 5.37 0.20 5.25 3.05 0.00 0.00 14.36 7.79 13.92 1.74 1.94 9.72 5.60 7.42 2.08 11.13 8 E1_Ac KnownBoundary 0 484.53 39.47 3.37 3.86 355.60 294.32 175.02 9.90 0.00 13.27 44.70 0.00 0.00 99.77 39.56 107.07 38.15 6.92 83.30 101.50 65.24 30.98 33.63 9 ER1b ExonRegion 1 380.34 47.31 50.08 32.66 272.03 227.88 141.75 58.48 28.53 62.77 43.81 0.00 6.25 108.27 59.77 108.28 45.55 22.67 92.16 92.48 60.75 37.02 44.64 10 E1_Ad KnownBoundary 0 364.36 67.49 58.40 40.25 130.14 137.53 117.78 65.47 67.51 100.87 33.17 27.46 36.04 18.01 21.51 87.50 25.71 27.77 58.26 80.41 20.70 15.06 35.68 11 ER1c ExonRegion 1 542.36 81.85 69.85 47.02 350.52 315.41 201.90 89.88 48.17 89.75 65.72 0.00 14.07 140.89 70.36 150.84 59.42 28.18 121.04 132.45 71.07 44.80 58.00 12 ER1d ExonRegion 0 216.76 46.92 62.72 78.42 129.71 127.04 113.00 161.05 79.91 123.57 44.58 19.76 25.39 48.70 41.56 64.42 46.40 36.59 81.40 109.41 38.70 18.22 30.42 13 E1_Da NovelBoundary 1 0.00 0.00 21.23 21.08 3.31 0.00 2.16 7.80 0.00 20.28 7.63 6.30 0.00 2.30 4.45 0.00 22.91 7.30 13.93 17.45 3.15 3.12 0.00 14 E1a_E2a KnownJunction 0 17.34 8.62 55.70 84.67 8.06 8.86 11.79 149.92 84.37 127.62 74.39 17.86 25.81 45.38 66.51 22.56 57.13 6.26 17.51 115.63 59.06 12.49 7.68 15 E1a_E6a NovelJunction 0 6.67 0.00 1.83 29.93 8.32 5.28 0.00 16.80 8.74 21.25 0.00 18.31 0.00 4.94 6.18 0.00 0.00 0.00 0.00 11.12 13.65 0.00 0.00 16 I1 Intron 0 8.74 10.09 39.01 23.72 12.25 11.53 29.54 22.32 9.41 15.43 6.32 11.81 24.36 7.90 8.44 18.63 11.09 21.15 28.21 23.49 3.67 3.07 12.06 17 I1_AR1 ActiveIntronRegion 0 5.15 7.43 18.20 14.33 10.12 8.50 16.03 14.77 5.08 13.81 6.46 7.09 14.50 6.46 5.76 19.31 12.25 23.11 32.53 21.17 5.18 3.37 14.17 18 I1_SR1 SilentIntronRegion 0 7.77 8.41 45.00 25.47 13.57 13.17 31.46 24.88 10.93 16.38 7.41 9.71 23.49 10.34 8.67 20.69 12.09 27.25 30.96 25.25 4.26 2.97 13.90 19 I1_AR3 ActiveIntronRegion 0 17.08 20.39 52.92 33.04 12.11 13.44 41.13 25.52 11.71 18.81 4.73 25.42 41.20 5.63 12.25 22.17 12.54 11.70 26.88 29.40 2.43 2.29 11.50 20 I1_SR2 SilentIntronRegion 0 6.35 6.48 24.97 17.14 10.03 6.19 25.57 18.35 6.21 8.65 3.62 8.45 18.98 2.67 5.98 2.79 2.46 4.66 10.75 10.37 0.41 4.30 1.10 21 E2_Aa NovelBoundary 1 0.00 21.90 33.85 32.56 11.12 20.05 55.42 24.89 7.58 13.86 2.47 0.00 41.56 4.71 8.90 12.30 0.00 2.45 0.00 24.54 0.00 2.39 4.35 22 ER2a ExonRegion 0 21.70 15.11 40.34 64.96 39.33 31.52 36.59 191.31 91.40 153.65 54.12 41.92 37.59 120.06 82.85 87.32 46.16 12.96 36.20 130.90 41.28 26.66 22.79 23 E2_Da NovelBoundary 1 8.74 15.79 76.37 46.55 14.52 13.63 37.45 19.88 18.75 23.53 0.00 45.31 47.89 4.30 0.00 17.17 0.00 4.39 42.54 10.99 0.00 8.39 16.05 24 E2a_E3a KnownJunction 0 6.52 5.92 3.19 18.48 16.55 10.68 0.00 71.84 45.72 69.01 23.37 42.91 6.82 14.77 18.79 15.89 0.00 0.00 13.27 32.28 11.31 5.33 0.00 25 E2a_E4a NovelJunction 0 6.82 0.00 16.56 6.33 11.63 0.00 0.00 24.11 19.36 7.90 10.21 6.30 13.64 20.90 8.90 26.66 4.58 2.45 4.80 24.16 3.15 6.25 8.71 26 E2a_E6a KnownJunction 0 32.60 11.77 24.69 55.37 56.45 61.56 31.18 176.00 60.16 111.72 18.16 24.31 6.33 80.58 82.82 69.55 26.18 21.89 18.17 104.95 38.05 24.00 19.63 27 I2 Intron 0 7.32 9.53 44.42 30.15 9.56 7.37 24.53 18.11 5.34 15.45 4.53 6.76 19.70 5.49 8.61 15.92 9.95 21.33 34.13 13.30 2.21 3.02 9.18 28 I2_SR1 SilentIntronRegion 0 7.34 9.55 44.51 30.21 9.58 7.38 24.58 18.15 5.35 15.48 4.54 6.78 19.75 5.50 8.63 15.96 9.97 21.38 34.20 13.33 2.22 3.03 9.20 29 ER3a ExonRegion 1 40.03 66.60 24.76 33.96 52.34 50.89 74.04 58.62 46.98 62.30 15.18 47.04 67.69 36.91 60.97 73.40 44.47 27.69 65.77 91.05 25.09 23.40 46.66 30 E3_Da NovelBoundary 0 13.85 45.52 27.29 29.00 122.33 205.90 50.08 109.75 35.10 54.56 17.48 37.66 71.42 52.74 72.32 48.11 13.09 53.77 106.83 60.34 11.80 14.70 32.95 31 E3a_E4a KnownJunction 0 0.00 0.00 0.00 17.35 4.33 5.11 0.00 15.94 13.60 15.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 32 E4_Aa NovelBoundary 0 44.16 67.82 71.46 86.14 66.98 49.01 135.36 106.14 72.16 61.22 24.80 25.96 42.04 33.67 19.53 35.63 20.66 69.89 50.54 86.48 18.04 21.06 55.66 33 ER4a ExonRegion 1 16.66 27.34 45.04 53.37 25.21 22.92 28.25 80.54 46.75 48.29 9.76 31.33 48.01 27.85 16.74 20.74 14.76 15.76 24.99 51.68 7.99 2.92 13.20 34 E4_Da NovelBoundary 1 16.97 55.06 97.63 87.37 44.40 40.77 41.51 67.98 33.80 51.79 12.32 43.06 112.01 12.42 16.07 23.93 25.43 14.38 40.00 48.19 8.83 0.00 15.96 35 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 1.77 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E4a_E6a NovelJunction 0 43.12 9.80 1.83 45.25 19.95 22.94 6.40 101.99 58.19 36.00 4.63 0.00 28.73 18.95 9.89 12.39 8.60 0.00 0.00 41.03 13.59 10.23 0.00 37 I4 Intron 0 14.95 17.16 57.92 48.78 22.43 26.40 40.72 54.28 25.54 55.96 15.30 20.02 51.06 15.03 15.64 28.30 15.78 48.35 50.61 36.94 6.35 6.45 12.22 38 I4_SR1 SilentIntronRegion 0 13.85 35.22 51.30 46.80 22.26 14.50 35.21 54.45 25.35 45.44 16.34 22.43 33.26 20.56 11.22 30.40 16.66 32.43 43.87 37.72 5.71 5.40 8.81 39 I4_AR1 ActiveIntronRegion 0 23.30 20.86 70.79 63.97 30.99 31.40 52.20 73.83 33.76 66.04 18.68 25.85 63.22 18.58 21.50 31.42 17.76 46.10 58.10 47.00 8.01 9.99 15.83 40 I4_SR2 SilentIntronRegion 0 22.43 24.96 89.62 89.58 45.46 58.03 86.87 77.32 42.97 93.96 25.39 46.33 106.92 20.82 22.35 41.71 18.71 82.13 88.91 54.70 7.56 11.12 21.24 41 I4_AR2 ActiveIntronRegion 0 10.51 8.56 53.78 37.46 13.42 19.51 26.83 46.64 20.96 53.75 13.63 11.51 44.37 12.27 13.89 27.47 17.77 55.02 45.42 33.17 7.28 4.66 9.56 42 I4_SR3 SilentIntronRegion 0 2.41 3.62 19.02 15.71 10.68 20.49 24.91 19.90 6.91 37.75 6.84 2.66 14.19 6.40 10.66 10.31 7.76 31.65 19.87 16.49 1.54 1.82 5.55 43 I4_AR3 ActiveIntronRegion 0 5.11 5.69 31.53 10.75 8.93 18.14 13.22 25.94 9.38 25.22 4.05 0.00 6.67 4.62 4.39 9.40 6.18 33.99 16.61 10.90 2.00 0.76 9.57 44 I4_SR4 SilentIntronRegion 0 6.07 6.48 24.45 18.13 4.26 14.03 14.79 9.85 5.26 9.81 1.85 8.28 24.45 4.20 8.92 16.11 3.16 16.69 33.51 11.53 0.70 1.33 6.55 45 E5_Aa NovelBoundary 1 343.39 590.55 769.28 790.38 303.06 582.34 536.75 862.35 691.60 896.28 119.93 41.26 44.48 36.02 127.70 452.45 292.57 920.27 519.26 511.85 250.26 295.33 474.11 46 ER5a ExonRegion 1 15.00 25.79 82.21 33.38 22.35 23.73 50.34 54.59 20.82 58.07 5.99 17.11 55.43 12.06 18.37 34.09 20.47 50.31 50.72 31.25 9.91 5.18 13.85 47 E5_Da NovelBoundary 1 24.82 18.88 97.31 59.40 16.04 7.95 33.48 43.74 18.63 56.22 8.00 0.00 53.89 7.89 4.45 27.09 17.30 49.62 33.79 29.40 15.69 8.57 45.07 48 E5a_E6a KnownJunction 0 3.78 0.00 0.00 0.00 7.81 0.00 0.00 6.37 1.71 1.61 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 I5 Intron 0 11.69 13.08 85.40 41.89 5.42 9.45 25.83 18.02 8.47 23.29 4.27 12.75 30.93 2.57 9.05 16.43 10.33 39.04 35.76 24.67 8.92 3.06 11.88 50 I5_SR1 SilentIntronRegion 0 11.73 13.12 85.71 42.03 5.44 9.49 25.93 18.09 8.50 23.37 4.29 12.80 31.05 2.58 9.08 16.49 10.37 39.18 35.89 24.76 8.94 3.07 11.93 51 E6_Aa NovelBoundary 0 14.67 12.50 94.17 63.20 4.07 35.32 48.14 41.69 14.32 26.84 4.74 18.76 27.43 4.71 8.90 12.05 8.23 43.24 57.23 41.48 8.15 9.12 4.01 52 ER6a ExonRegion 0 43.40 42.29 98.47 112.94 86.42 64.69 53.01 211.55 119.64 146.10 26.93 30.73 66.00 50.09 54.93 58.00 31.61 57.34 49.62 135.15 52.31 17.95 25.90 53 E6_Da NovelBoundary 0 178.40 41.51 71.26 70.25 38.96 26.06 15.81 125.40 72.40 63.05 11.48 0.00 6.82 14.13 5.56 41.87 12.81 36.52 29.46 65.13 22.73 15.92 7.68 54 E6a_E7a KnownJunction 0 0.00 3.35 0.00 42.22 17.15 0.00 0.00 25.34 15.94 14.21 2.63 0.00 0.00 4.36 4.45 3.50 4.77 2.11 0.00 2.68 3.03 2.51 0.00 55 E6a_E7b KnownJunction 0 0.00 0.00 21.26 17.45 0.00 2.90 16.52 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 3.93 0.00 10.36 3.67 0.00 0.00 2.45 0.00 56 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E7_Aa NovelBoundary 0 461.04 215.36 500.69 485.59 428.44 255.31 390.13 639.52 365.88 561.47 109.61 61.82 110.06 49.62 88.02 436.04 254.32 298.34 156.43 359.21 72.03 48.07 109.78 58 ER7a ExonRegion 0 85.61 50.19 70.53 140.23 126.40 83.93 73.10 198.23 96.75 113.28 21.39 30.70 89.26 62.09 65.90 39.39 22.02 17.74 29.58 111.02 26.32 16.43 14.39 59 E7_Ab KnownBoundary 0 96.02 51.57 109.66 183.93 246.10 108.46 66.77 279.96 132.84 150.99 25.11 43.06 78.57 66.04 122.50 30.08 21.60 34.61 26.64 150.72 27.74 17.94 4.35 60 ER7b ExonRegion 0 100.03 40.71 132.58 174.95 122.59 64.42 59.78 214.69 92.00 148.43 27.37 42.58 74.29 70.50 56.99 51.63 36.85 47.21 56.60 117.28 33.10 16.72 22.39 61 E7_Da KnownBoundary 0 186.26 111.49 423.46 293.64 225.04 100.68 221.52 528.83 376.56 461.97 63.81 74.12 20.94 56.74 57.85 196.70 74.24 241.55 95.44 121.25 85.62 86.77 127.36 62 E7a_E9a KnownJunction 0 0.00 8.81 24.57 23.77 16.21 15.56 6.14 29.37 7.41 15.15 4.69 0.00 6.49 11.83 4.82 0.00 12.53 6.01 31.15 0.00 11.61 0.00 4.10 63 ER7c ExonRegion 0 39.07 25.01 32.45 18.54 50.89 20.21 27.83 39.51 17.24 30.12 10.13 19.83 31.24 28.71 26.92 15.75 18.49 7.35 18.60 41.19 12.47 7.08 7.52 64 E7_Db NovelBoundary 0 60.46 28.61 185.86 159.65 244.57 93.98 120.48 211.78 108.88 242.67 7.16 12.60 33.28 26.43 9.64 35.97 17.48 171.33 29.55 85.46 13.28 17.51 15.96 65 I7 Intron 0 7.81 8.43 17.47 23.26 29.83 12.16 19.05 22.70 11.51 17.39 3.49 4.97 23.61 12.47 14.31 19.48 4.97 12.53 23.76 31.10 6.80 3.30 6.19 66 I7_SR1 SilentIntronRegion 0 7.82 8.44 17.50 23.29 29.87 12.17 19.08 22.73 11.53 17.41 3.50 4.98 23.64 12.49 14.33 19.50 4.98 12.55 23.79 31.14 6.81 3.30 6.20 67 E8_Aa NovelBoundary 0 0.00 5.20 42.75 51.91 31.66 38.84 29.15 62.31 41.87 53.64 6.74 6.30 19.64 24.49 27.81 23.67 0.00 14.09 25.98 48.64 2.59 3.12 3.93 68 ER8a ExonRegion 0 3.60 7.76 37.19 27.39 30.41 3.90 12.37 43.24 15.55 24.24 2.43 9.34 27.75 10.41 7.91 22.51 15.18 10.44 10.83 37.71 7.47 0.89 1.17 69 E8_Da NovelBoundary 0 32.97 54.07 195.56 216.62 150.25 152.41 109.92 177.19 103.64 205.66 60.23 33.76 80.03 45.62 57.85 90.06 59.37 84.48 59.77 164.59 52.82 29.27 45.67 70 E8a_E10a KnownJunction 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 I8 Intron 0 16.40 13.12 25.93 44.23 36.38 13.41 25.68 48.40 24.38 32.78 4.44 7.27 31.75 16.87 16.63 21.75 13.72 18.84 23.44 34.36 5.92 4.06 6.48 72 I8_SR1 SilentIntronRegion 0 16.42 13.13 25.95 44.26 36.41 13.43 25.70 48.44 24.40 32.81 4.44 7.27 31.77 16.89 16.65 21.76 13.73 18.86 23.46 34.39 5.92 4.06 6.49 73 E9_Aa NovelBoundary 0 57.27 6.18 26.67 30.27 52.21 29.30 27.73 34.46 14.90 30.38 2.26 12.60 50.32 24.49 10.14 15.21 8.51 12.10 12.80 25.95 0.00 2.57 3.84 74 ER9a ExonRegion 0 21.68 29.04 54.63 82.80 54.83 29.93 30.18 67.75 33.51 53.60 8.62 14.31 30.79 30.98 34.58 23.08 15.60 21.92 20.36 50.48 17.10 9.24 15.98 75 E9_Da KnownBoundary 1 937.35 1243.27 1200.82 1309.16 808.91 1354.84 1361.14 1253.42 719.35 1118.99 1184.46 202.27 95.61 354.00 496.32 769.71 998.32 548.51 503.64 864.16 540.43 588.09 282.89 76 ER9b ExonRegion 0 25.82 28.28 47.28 67.74 89.23 24.37 33.78 88.50 36.38 51.26 18.86 18.15 26.63 30.77 23.77 17.45 12.40 11.50 21.05 54.13 6.73 16.12 21.86 77 E9_Db NovelBoundary 1 1427.22 2804.96 1023.77 1312.19 1381.92 1106.86 1042.77 1193.53 672.59 1029.38 1533.60 1117.86 454.84 957.62 598.80 820.30 1036.18 561.86 867.41 645.50 427.62 725.98 361.85 78 I9 Intron 0 32.56 27.10 35.82 64.36 62.97 33.29 33.87 71.27 31.70 46.76 4.14 9.99 23.58 11.15 15.88 15.69 7.85 11.82 19.02 32.34 5.98 5.94 7.78 79 I9_AR1 ActiveIntronRegion 0 8.79 8.42 10.83 25.25 22.21 1.09 6.28 29.00 15.27 19.24 8.00 6.49 6.87 10.99 10.19 8.81 9.79 6.53 9.44 13.83 5.23 12.33 10.45 80 I9_AR2 ActiveIntronRegion 0 33.11 20.13 27.21 60.32 75.04 28.43 31.09 64.17 28.10 38.96 7.29 23.15 34.09 12.43 20.25 11.70 6.48 6.19 12.36 32.88 2.37 6.65 5.75 81 I9_SR2 SilentIntronRegion 1 27.27 6.48 8.86 17.24 38.89 17.95 11.98 26.33 25.10 25.02 7.64 0.30 23.01 10.69 28.74 13.13 7.52 8.34 27.48 19.40 3.95 9.74 10.24 82 I9_AR3 ActiveIntronRegion 0 41.37 58.44 25.53 57.31 81.05 22.79 45.77 62.35 26.92 46.90 2.50 6.10 18.25 12.50 12.88 18.85 11.54 12.96 25.98 36.35 9.41 6.74 5.32 83 I9_SR3 SilentIntronRegion 0 34.00 25.54 44.47 74.16 62.63 40.88 36.11 82.83 36.73 53.74 3.68 8.38 24.31 11.27 16.41 17.53 7.90 14.20 20.78 34.65 6.71 5.61 9.18 84 E10_Aa NovelBoundary 0 41.93 48.61 147.07 209.83 90.24 48.04 110.50 181.83 194.59 196.50 20.11 35.56 49.51 17.95 16.19 50.93 44.88 141.81 30.78 68.14 29.78 49.48 28.43 85 ER10a ExonRegion 1 40.09 25.22 1.24 0.10 33.41 16.03 16.42 0.59 0.11 0.59 0.06 2.60 9.11 0.00 11.40 4.59 5.23 0.08 6.96 11.09 3.24 1.52 4.45 86 IG15 Intergenic 0 7.23 14.95 18.59 16.52 21.20 29.72 21.70 16.97 10.25 17.71 7.08 6.91 7.98 9.50 6.67 8.37 7.40 9.37 14.76 15.00 6.04 4.75 6.81 87 IG15_AR3 ActiveIntergenicRegion 0 13.78 44.39 42.71 41.18 35.83 42.73 34.86 34.02 20.43 30.57 18.44 29.32 24.52 16.45 13.59 12.27 15.75 10.80 22.80 38.25 8.89 12.04 5.93 88 IG15_SR4 SilentIntergenicRegion 0 4.92 8.00 22.88 17.84 21.54 28.91 19.11 17.43 14.94 22.92 8.11 4.89 9.02 18.05 8.00 12.17 10.38 16.43 18.63 17.90 9.41 4.58 9.63 89 IG15_AR5 ActiveIntergenicRegion 0 11.66 17.59 27.22 14.84 26.53 75.81 43.24 18.88 14.39 25.52 13.20 4.94 3.56 16.23 11.68 17.10 12.03 22.35 34.95 24.88 15.18 7.40 16.82