Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAPT Gene 0 39.87 374.49 434.72 421.89 351.89 1201.29 368.39 1228.67 990.91 816.61 0.25 0.76 0.14 0.40 0.53 0.56 1.13 579.28 130.49 613.70 7.45 3.12 9.61 2 344290 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.17 0.79 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 1.26 0.00 0.00 0.00 3 262410 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 351559 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 340799 Transcript 0 0.00 6.71 25.28 19.74 7.47 151.05 27.73 32.61 51.13 54.40 2.68 0.00 0.00 0.00 0.00 0.00 0.00 85.97 0.00 37.78 2.90 0.00 13.06 6 347967 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 354326 Transcript 0 0.00 0.00 0.00 0.45 0.00 0.15 0.11 0.14 0.21 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 8 420682 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 334239 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.00 1.24 1.12 0.98 0.28 1.65 2.37 6.78 3.96 3.73 0.00 0.00 0.00 0.00 0.80 0.00 0.00 7.38 1.07 7.38 0.00 0.00 0.89 11 E1_Ab KnownBoundary 0 0.00 8.55 1.83 1.40 3.57 5.17 10.82 13.72 5.87 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.23 0.00 29.34 0.00 0.00 3.16 12 ER1b ExonRegion 0 15.49 62.30 31.05 18.42 25.84 309.29 172.66 72.22 62.93 65.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 167.78 35.74 171.04 0.43 0.71 5.30 13 E1_Ac KnownBoundary 0 41.49 139.25 38.11 26.60 62.31 657.12 336.08 83.79 66.61 55.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 174.35 61.18 313.58 4.82 0.00 8.45 14 ER1c ExonRegion 0 52.30 183.93 150.64 69.27 114.47 1309.90 483.51 373.99 368.51 373.05 0.90 0.00 0.00 0.00 1.11 0.00 0.00 552.93 121.04 560.21 2.82 1.70 7.96 15 E1a_E2a KnownJunction 0 16.60 103.14 149.91 68.56 142.44 1041.28 155.41 293.19 236.75 282.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 193.75 32.75 354.23 6.12 0.00 3.50 16 ER2a ExonRegion 0 11.08 102.34 260.97 188.13 87.32 426.39 123.38 691.40 674.53 667.84 1.31 0.00 0.00 0.00 0.00 0.00 0.00 760.69 162.28 906.04 11.14 3.56 12.39 17 E2a_E3a KnownJunction 0 3.78 0.00 13.69 14.12 11.29 50.71 12.14 21.40 35.59 28.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 111.97 4.33 32.66 9.39 6.25 7.60 18 E2a_E6a KnownJunction 0 21.41 163.52 330.74 308.95 140.24 557.01 224.96 1131.22 1115.79 998.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1222.09 303.44 1213.47 0.00 0.00 0.00 19 I2_SR2 SilentIntronRegion 0 5.24 44.31 21.41 19.01 6.20 41.02 78.88 61.68 48.56 37.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.45 8.05 98.10 0.00 0.00 0.00 20 I2_AR3 ActiveIntronRegion 0 3.32 31.15 22.65 50.15 13.56 42.60 62.32 93.26 55.21 57.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.60 19.77 147.34 0.00 0.00 3.72 21 ER3a ExonRegion 0 4.23 4.70 20.73 15.73 8.67 90.38 24.91 27.64 46.15 44.68 0.67 0.00 0.00 0.00 0.00 0.00 0.00 113.90 11.97 63.56 14.39 2.37 11.27 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E5a KnownJunction 0 3.48 0.00 0.00 0.00 0.00 17.32 0.00 2.55 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.12 7.91 0.00 9.33 0.00 0.00 24 E3a_E6a KnownJunction 0 0.00 6.71 25.28 19.74 7.47 151.05 27.73 32.61 51.13 54.40 2.68 0.00 0.00 0.00 0.00 0.00 0.00 85.97 0.00 37.78 2.90 0.00 13.06 25 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.46 0.33 0.43 0.62 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 0.39 1.40 0.11 2.44 0.00 17.24 7.99 16.09 7.18 5.66 0.00 0.00 0.00 0.39 0.00 0.00 0.00 13.89 2.78 20.03 3.90 0.00 0.17 28 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 16.87 1.94 11.30 8.68 1.02 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.03 0.00 0.00 3.09 0.00 0.00 29 E6_Ab NovelBoundary 0 9.26 62.23 149.79 126.89 38.79 264.90 93.89 505.17 483.15 471.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 410.02 115.20 471.71 2.29 0.00 10.24 30 ER6a ExonRegion 0 17.54 146.71 344.68 292.63 122.32 611.44 202.19 1039.29 1094.66 957.34 1.93 0.00 0.00 1.62 0.00 0.00 0.00 1218.99 286.23 1198.48 5.67 0.00 16.78 31 ER6b ExonRegion 0 12.13 125.81 355.92 218.62 197.14 984.38 296.23 1044.75 1102.31 995.16 0.46 0.00 0.00 0.39 0.00 0.00 0.00 896.03 230.75 1049.94 8.89 1.70 12.54 32 E6_Da NovelBoundary 0 0.00 13.35 8.96 8.82 3.99 11.36 29.01 44.15 8.83 13.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.82 0.00 26.08 2.84 0.00 12.04 33 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E6a_E8a KnownJunction 0 7.48 150.57 420.33 185.59 411.12 2190.73 808.00 1074.17 1138.27 999.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 699.73 122.26 1030.73 0.00 0.00 0.00 35 I6_AR1 ActiveIntronRegion 0 6.47 47.81 20.72 37.05 34.58 28.93 86.13 74.56 34.37 45.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.28 5.45 81.76 1.36 0.55 4.26 36 I6_AR4 ActiveIntronRegion 0 16.40 78.93 30.79 60.31 46.49 38.62 117.92 82.86 41.92 50.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.04 3.98 84.31 2.20 0.00 0.00 37 I6_AR5 ActiveIntronRegion 0 19.05 82.16 31.86 64.87 65.82 46.95 115.85 81.41 45.33 52.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.39 9.56 92.98 2.20 0.00 0.00 38 I6_AR6 ActiveIntronRegion 0 19.05 77.81 34.37 71.23 61.40 55.59 110.45 79.87 43.23 43.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.36 11.74 91.04 1.39 0.00 0.00 39 I6_AR7 ActiveIntronRegion 0 14.21 73.79 35.71 67.95 64.98 60.25 88.89 73.83 38.64 38.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.74 12.74 85.41 0.00 0.00 0.00 40 E7_Aa NovelBoundary 0 0.00 8.62 25.90 15.85 0.00 4.54 9.63 52.41 22.83 34.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.46 0.00 52.41 10.07 2.63 12.29 41 ER7a ExonRegion 0 3.58 10.74 18.17 14.44 9.42 13.44 15.43 31.90 17.19 30.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.14 5.61 33.57 3.55 0.85 5.25 42 E7a_E8a KnownJunction 0 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 7.97 0.00 4.10 43 ER8a ExonRegion 0 16.93 174.13 345.69 233.83 262.03 1828.46 669.45 1060.53 1088.60 963.15 2.14 0.00 0.00 0.00 0.00 0.00 0.00 710.79 117.69 896.65 6.06 7.96 4.56 44 E8a_E9a KnownJunction 0 2.89 0.00 4.97 1.76 0.00 4.43 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 5.56 3.12 0.00 45 E8a_E10a KnownJunction 0 31.56 286.92 321.57 344.68 261.71 2571.87 747.32 1176.77 1130.60 1047.51 5.21 0.00 0.00 0.00 0.00 0.00 0.00 733.39 205.94 1077.39 0.00 0.00 0.00 46 I8_SR1 SilentIntronRegion 0 4.91 43.61 27.16 34.92 38.77 43.93 81.84 67.67 48.71 50.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.35 16.00 83.44 1.28 0.00 5.11 47 I8_AR1 ActiveIntronRegion 0 10.33 143.43 17.36 28.66 27.34 26.14 57.42 50.80 37.78 38.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.81 6.06 65.40 0.80 0.26 1.57 48 E9_Aa NovelBoundary 0 13.04 167.67 71.97 83.11 59.93 65.98 192.95 139.86 74.94 78.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.18 11.01 105.66 0.00 0.00 4.35 49 ER9a ExonRegion 0 21.19 90.68 32.27 34.23 86.03 83.37 124.36 52.81 45.82 44.40 0.00 0.00 0.83 0.34 0.00 0.00 0.00 48.86 20.46 79.83 6.52 4.20 11.89 50 E9a_E10a KnownJunction 0 0.00 5.92 6.68 1.96 0.00 5.79 4.11 10.93 14.35 9.13 0.00 0.00 6.17 0.00 0.00 0.00 0.00 12.23 0.00 9.40 11.98 0.00 3.07 51 ER10a ExonRegion 0 42.80 205.66 363.86 243.80 118.34 915.79 307.56 1249.70 1222.94 1153.97 0.61 4.91 2.59 0.00 0.00 0.00 2.21 793.86 231.80 999.58 12.68 0.84 15.54 52 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E10a_E12a KnownJunction 0 25.56 147.74 247.95 162.08 102.04 488.41 253.94 903.63 788.82 785.79 0.00 6.00 6.82 0.00 0.00 0.00 4.49 606.30 108.61 600.57 3.09 0.00 0.00 54 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 6.52 2.38 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 3.78 0.00 0.00 0.00 55 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER12a ExonRegion 0 24.05 201.52 207.12 156.31 152.12 688.45 255.13 633.96 594.98 612.76 0.00 0.00 0.37 0.18 0.00 0.00 0.84 422.83 104.66 560.28 9.00 1.36 5.21 57 E12a_E13a KnownJunction 0 3.63 5.79 17.77 25.30 3.74 154.40 8.35 28.55 61.60 35.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.11 0.00 27.10 2.97 0.00 0.00 58 E12a_E14a KnownJunction 0 31.19 165.04 356.26 397.22 147.71 528.73 238.17 1202.73 1097.27 1009.26 0.00 0.00 0.00 2.47 0.00 0.00 0.00 724.61 185.89 770.97 7.41 2.94 3.76 59 ER13a ExonRegion 0 8.33 13.97 25.15 53.28 27.05 149.37 42.68 38.23 88.46 56.52 0.00 0.00 0.00 0.00 0.00 1.63 0.00 89.35 18.77 86.73 2.51 2.22 0.00 60 E13a_E14a KnownJunction 0 9.48 3.35 17.98 53.17 10.95 141.28 13.87 22.22 80.21 48.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.65 19.67 60.02 2.72 0.00 0.00 61 ER14a ExonRegion 0 37.92 208.27 358.66 362.61 209.56 649.41 246.60 1212.47 1239.14 1046.33 0.00 0.00 0.00 0.24 0.00 0.00 0.00 840.75 209.96 989.05 12.44 2.64 5.30 62 E14a_E15a KnownJunction 0 19.71 322.25 373.82 305.72 212.65 649.40 303.75 1278.27 1225.45 990.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 716.98 184.38 912.29 18.66 3.06 8.37 63 ER15a ExonRegion 0 20.88 318.28 477.12 527.34 421.92 1578.69 641.80 1509.19 1487.91 1202.52 0.00 3.22 0.00 0.60 0.00 1.34 1.49 1108.93 244.68 1178.79 13.36 4.13 14.45 64 E15a_E16a KnownJunction 0 23.19 369.21 475.56 531.93 673.60 1793.17 513.83 1530.17 1462.43 1164.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 999.86 328.01 1195.51 11.06 2.63 11.87 65 ER16a ExonRegion 0 24.54 349.31 319.25 349.90 369.84 1240.91 465.22 1084.62 1024.64 863.18 0.23 2.28 0.00 0.32 0.24 1.27 1.76 739.58 196.31 720.81 9.77 3.50 11.01 66 E16_Da KnownBoundary 0 19.41 220.22 246.68 261.90 592.95 1473.41 565.42 699.78 591.57 524.75 0.00 0.00 0.00 0.00 0.00 4.27 8.04 224.64 87.34 363.82 2.59 0.00 8.28 67 E16_Db KnownBoundary 0 16.45 335.01 325.89 521.41 650.26 1586.19 568.73 1605.50 1129.21 1060.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 345.68 253.09 561.96 2.72 5.51 8.54 68 ER16b ExonRegion 0 16.05 283.09 370.62 510.85 660.58 1771.14 615.64 1570.23 1176.55 1074.17 0.00 0.00 0.00 0.00 0.00 2.35 3.30 391.80 182.23 541.04 3.67 3.13 12.73 69 ER16c ExonRegion 0 57.52 555.34 639.47 627.70 515.42 1693.92 488.81 1772.94 1373.62 1104.38 0.25 0.82 0.10 0.58 0.84 0.73 1.59 730.90 159.42 761.34 7.97 3.91 11.09 70 IG38 Intergenic 0 3.66 12.22 5.28 7.17 4.82 3.99 8.95 5.52 4.35 5.91 0.29 0.92 0.58 0.36 0.95 1.00 1.86 2.90 4.66 18.70 0.66 0.23 1.87 71 IG38_SR1 SilentIntergenicRegion 0 0.85 10.96 4.40 8.04 6.21 7.61 11.54 2.83 4.21 9.20 0.00 0.00 0.00 0.00 0.00 1.32 3.33 2.55 3.96 20.68 0.00 0.00 4.93 72 IG38_SR2 SilentIntergenicRegion 0 3.94 12.41 5.39 7.15 4.71 3.70 8.75 5.82 4.41 5.65 0.32 1.02 0.64 0.39 1.06 0.99 1.73 2.96 4.78 18.64 0.73 0.26 1.58