Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACBD4 Gene 0 29.42 7.23 50.89 37.98 15.02 28.55 15.65 39.62 25.14 29.11 24.39 14.22 12.32 40.89 50.51 67.75 30.34 22.24 22.73 25.32 28.26 12.24 25.15 2 431281 Transcript 0 6.04 3.44 4.73 3.26 1.93 36.65 2.33 2.58 4.24 1.60 0.19 0.18 0.00 0.07 0.22 2.04 0.16 1.46 6.39 1.08 7.59 5.21 3.94 3 376955 Transcript 0 13.27 6.96 16.54 12.79 7.84 7.36 12.71 12.34 11.92 9.28 6.09 5.90 5.62 6.51 11.65 18.66 10.71 10.12 6.75 12.02 4.18 2.63 10.20 4 321854 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 398322 Transcript 0 3.89 1.60 30.32 25.36 6.46 12.65 11.07 28.82 17.55 24.70 9.95 8.35 7.93 13.36 14.64 24.93 13.80 24.40 13.01 10.53 15.72 5.82 11.24 6 428033 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 2.12 3.18 0.98 0.66 0.00 28.77 1.94 0.59 2.49 0.93 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.84 4.63 0.13 2.65 3.61 2.84 8 E1_Da NovelBoundary 0 3.63 0.00 8.60 1.90 0.00 7.15 0.00 2.42 1.33 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 6.72 8.75 0.00 2.84 2.45 11.78 9 E1a_E2a KnownJunction 0 16.67 9.34 6.56 2.06 3.99 94.55 6.49 2.18 6.71 2.98 0.00 0.00 0.00 0.00 0.00 3.93 0.00 2.49 13.84 0.00 8.71 12.31 8.37 10 ER2a ExonRegion 0 5.38 1.23 7.71 6.43 3.73 20.20 0.89 7.55 7.78 2.49 0.77 0.71 0.00 0.27 0.88 2.54 0.66 2.53 7.09 4.21 13.43 4.91 4.55 11 E2_Da NovelBoundary 0 14.08 0.00 5.09 7.96 8.57 14.65 0.00 17.99 14.90 1.26 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 3.93 12 E2a_E3b KnownJunction 0 0.00 0.00 3.67 3.90 0.00 3.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 13 E3_Aa NovelBoundary 0 3.33 0.00 5.85 2.06 3.82 10.73 0.00 4.72 3.36 3.22 0.00 6.15 0.00 0.00 0.00 0.00 0.00 4.35 0.00 14.32 14.21 0.00 0.00 14 ER3a ExonRegion 0 23.01 3.68 19.61 14.89 6.29 13.93 5.92 20.43 14.39 12.81 17.60 6.54 5.50 17.24 36.77 85.54 22.15 10.64 37.15 18.36 25.49 9.18 37.47 15 E3_Ab KnownBoundary 0 36.82 5.85 34.36 24.11 16.30 7.95 1.72 23.91 24.13 17.54 20.58 7.20 6.66 27.90 9.64 14.78 43.48 13.97 8.56 14.96 37.62 8.57 11.95 16 ER3b ExonRegion 0 31.86 8.46 47.84 40.70 14.97 43.10 5.40 49.19 28.46 35.16 41.41 11.82 9.51 56.10 96.92 174.87 46.78 42.38 68.53 41.08 51.50 25.27 67.86 17 E3_Da KnownBoundary 0 10.30 3.35 32.67 29.70 4.07 13.06 4.06 19.72 16.78 15.77 9.84 13.50 0.00 10.12 0.00 44.01 22.63 38.84 26.73 8.82 11.55 2.45 23.99 18 E3a_E3c KnownJunction 0 23.49 6.58 25.40 34.56 8.15 26.29 0.00 24.77 21.85 17.41 20.32 25.06 0.00 28.02 61.44 83.06 20.76 27.82 4.24 23.71 14.95 17.57 23.73 19 ER3c ExonRegion 0 3.89 1.60 30.32 25.36 6.46 12.65 11.07 28.82 17.55 24.70 9.95 8.35 7.93 13.36 14.64 24.93 13.80 24.40 13.01 10.53 15.72 5.82 11.24 20 E3_Ac KnownBoundary 0 9.48 2.50 38.23 18.61 8.66 23.34 10.38 39.97 17.27 34.95 13.64 20.26 15.10 12.60 33.87 23.24 17.39 29.43 35.58 11.76 17.92 3.12 6.32 21 ER3d ExonRegion 0 20.23 6.56 65.27 55.01 20.22 53.49 18.17 59.05 34.69 41.64 41.15 24.96 20.80 63.00 54.59 78.09 42.06 29.21 20.22 31.37 42.26 15.39 44.48 22 E3_Db NovelBoundary 1 3.78 5.53 14.69 14.95 12.22 15.67 7.07 14.87 12.85 9.67 7.63 0.00 0.00 2.24 31.65 0.00 4.21 11.11 17.51 0.00 2.53 5.39 15.96 23 E3b_E4a KnownJunction 0 46.82 2.96 68.57 67.22 16.72 40.66 18.90 52.41 31.42 39.19 24.06 19.51 32.47 73.87 42.28 74.85 38.52 15.21 12.05 31.38 33.05 13.10 18.10 24 I3 Intron 0 8.49 0.78 9.77 7.37 3.58 8.76 3.79 11.81 6.68 8.49 5.91 5.11 6.85 7.37 12.81 21.57 4.41 9.65 10.34 6.10 8.42 1.99 6.73 25 I3_AR1 ActiveIntronRegion 0 8.33 1.12 8.59 8.65 4.23 12.54 3.03 9.92 7.89 7.21 6.32 4.98 8.62 9.33 13.04 24.19 4.29 12.52 10.82 3.96 9.98 0.78 6.03 26 I3_SR1 SilentIntronRegion 0 8.74 0.59 10.64 6.84 3.31 6.83 4.30 13.12 6.18 9.35 5.81 5.30 6.04 6.48 12.99 20.58 4.58 8.31 10.31 7.37 7.76 2.70 7.27 27 E4_Aa NovelBoundary 0 10.22 0.00 9.52 12.62 0.00 23.11 15.94 8.21 7.29 8.92 8.79 0.00 12.82 4.41 0.00 35.80 17.58 1.70 20.24 12.53 2.78 2.51 6.66 28 ER4a ExonRegion 0 38.25 7.31 56.50 43.79 19.44 39.07 16.58 51.24 33.92 34.67 39.25 24.58 20.19 78.33 62.10 82.53 47.82 25.50 19.93 27.01 31.14 17.44 36.14 29 E4_Da NovelBoundary 0 6.96 2.83 25.43 26.80 11.71 10.51 7.91 22.47 15.94 19.99 7.32 12.60 6.33 24.31 26.70 36.57 8.98 21.80 30.68 8.56 10.87 5.88 31.16 30 E4a_E5a KnownJunction 0 29.49 6.12 47.63 54.44 29.97 34.75 6.14 34.63 24.83 22.21 37.33 5.40 6.82 80.64 35.73 88.78 52.36 15.38 28.05 14.00 38.92 4.90 60.86 31 I4 Intron 0 3.04 4.38 0.00 0.00 1.92 1.32 1.90 0.00 0.00 0.00 4.17 5.67 3.37 12.42 12.38 4.27 4.74 1.33 9.15 6.11 3.17 0.00 0.00 32 I4_AR1 ActiveIntronRegion 0 3.13 4.51 0.00 0.00 1.98 1.36 1.96 0.00 0.00 0.00 4.29 5.84 3.40 12.73 12.74 4.39 4.88 1.37 9.37 6.29 3.23 0.00 0.00 33 E5_Aa NovelBoundary 0 14.08 2.63 28.95 25.54 7.98 15.56 10.16 40.42 22.97 25.84 10.00 6.30 13.15 24.31 4.45 54.60 16.74 23.88 14.12 19.24 18.16 6.12 16.56 34 ER5a ExonRegion 0 34.74 6.70 67.64 58.03 24.99 36.96 11.51 57.14 31.01 32.96 43.80 26.18 24.33 99.21 81.51 115.88 61.44 29.09 32.08 35.84 63.23 14.36 44.53 35 E5a_E6a KnownJunction 0 42.82 15.98 81.43 65.56 4.24 36.12 16.03 49.25 21.79 27.75 42.80 23.41 32.95 67.16 95.56 124.67 55.91 49.00 44.24 41.61 27.37 16.90 39.18 36 E5a_E7a NovelJunction 0 6.89 0.00 34.92 15.08 7.72 12.44 4.28 39.14 19.30 20.42 5.11 0.00 0.00 6.95 8.78 16.75 0.00 4.39 14.31 12.66 8.03 2.94 8.11 37 ER6a ExonRegion 0 39.16 12.12 75.67 61.23 20.39 36.92 16.35 46.48 31.18 42.35 47.24 28.80 31.55 84.55 76.68 103.16 56.52 42.70 36.04 29.49 57.99 16.48 38.52 38 E6_Da NovelBoundary 0 3.33 0.00 9.61 4.59 0.00 5.28 1.94 10.15 2.60 9.54 2.68 6.00 0.00 2.41 14.96 3.42 13.84 4.06 0.00 0.00 0.00 0.00 21.51 39 E6a_E7a KnownJunction 0 54.01 15.79 57.12 60.00 16.64 26.06 26.06 50.85 40.71 38.31 43.17 31.81 46.59 98.71 116.82 129.54 58.06 41.66 25.60 35.86 26.26 14.02 28.17 40 ER7a ExonRegion 0 56.29 10.87 92.83 65.53 22.82 41.14 19.40 69.63 47.69 56.77 46.57 40.91 20.49 74.35 104.08 97.09 64.84 36.25 36.17 38.18 47.01 16.98 29.23 41 E7a_E8a KnownJunction 0 14.30 0.00 44.47 33.13 20.46 27.65 9.67 19.51 27.60 33.09 24.74 13.95 12.66 45.74 49.32 62.29 33.66 16.13 30.59 35.92 38.24 15.43 32.01 42 E7a_E8b KnownJunction 0 34.52 3.35 42.28 20.98 16.21 14.25 10.20 33.43 19.10 25.20 12.11 16.66 12.66 44.09 27.44 44.35 12.62 17.12 8.85 12.02 16.62 10.96 8.28 43 I7 Intron 0 4.04 0.00 4.53 5.04 2.04 2.10 1.26 4.92 5.27 5.88 1.85 2.87 5.16 1.53 6.98 13.61 3.78 5.27 3.65 4.88 0.84 0.00 2.80 44 I7_SR1 SilentIntronRegion 0 3.20 0.00 1.67 3.74 0.69 0.72 0.82 5.88 6.43 5.38 3.77 2.48 13.67 1.66 8.28 21.89 5.92 6.24 5.67 4.02 0.81 0.00 0.04 45 E8_Aa NovelBoundary 0 10.59 0.00 21.64 13.85 12.65 5.79 4.06 2.55 5.09 6.34 2.16 5.85 0.00 4.71 25.22 19.82 0.00 9.20 4.80 11.31 0.00 0.00 16.48 46 ER8a ExonRegion 0 7.43 0.73 42.07 28.41 14.96 27.37 13.78 25.93 23.66 28.88 25.97 11.55 7.34 46.47 37.12 52.58 20.82 27.29 12.17 25.15 27.46 15.17 28.46 47 E8_Ab KnownBoundary 0 3.63 2.83 38.82 28.90 15.37 21.86 19.87 34.46 23.03 28.04 29.59 24.16 19.48 44.26 31.15 32.47 30.48 31.42 4.80 11.95 16.37 10.41 24.41 48 ER8b ExonRegion 0 40.27 4.65 66.31 59.87 25.80 36.86 15.91 61.66 35.92 49.22 46.89 26.41 24.12 74.69 85.63 82.79 55.41 37.91 22.12 29.42 31.04 13.51 18.29 49 E8a_E9a KnownJunction 0 68.09 5.00 64.49 64.13 22.33 53.95 17.05 73.60 42.39 55.93 49.17 19.66 13.47 51.45 63.17 128.94 62.93 31.50 30.68 26.91 52.94 9.19 18.95 50 E8a_E9b KnownJunction 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 2.35 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E9_Ab NovelBoundary 0 23.49 2.76 31.10 40.72 10.36 27.88 3.71 35.28 24.57 24.66 19.58 5.25 12.82 20.95 14.09 55.03 23.09 16.37 19.11 23.01 17.79 7.65 17.84 52 ER9a ExonRegion 0 48.87 4.62 54.14 58.23 22.14 53.35 15.17 57.82 41.88 47.13 46.04 16.92 10.66 54.48 66.73 109.97 51.01 25.70 29.25 34.82 48.08 12.69 26.43 53 ER9b ExonRegion 0 39.99 10.51 49.35 42.75 17.58 48.02 18.84 45.34 26.47 30.54 40.00 12.52 22.80 72.19 61.02 91.36 33.77 32.86 25.48 35.84 33.23 12.63 26.11 54 E9_Da NovelBoundary 0 10.37 0.00 20.61 8.52 8.57 0.00 2.16 8.79 16.20 14.77 5.11 0.00 0.00 14.24 4.45 26.32 4.77 10.40 3.95 6.52 0.00 2.88 17.24 55 E9a_E10a KnownJunction 0 46.45 14.80 59.58 36.66 42.78 37.76 7.55 43.29 18.72 22.46 29.43 6.30 6.66 50.03 48.71 68.36 23.00 33.91 16.85 21.09 14.95 5.57 11.52 56 I9 Intron 0 3.78 0.52 4.89 4.66 3.07 4.22 2.70 2.30 10.09 5.23 1.48 2.73 1.09 3.53 6.72 15.90 3.79 2.11 4.87 2.71 3.37 1.06 4.11 57 I9_SR1 SilentIntronRegion 0 5.42 0.43 6.23 3.47 2.85 4.32 3.67 1.65 8.25 5.11 1.24 0.76 1.82 3.67 6.92 17.10 2.82 1.76 4.76 3.18 1.41 0.89 5.00 58 I9_SR3 SilentIntronRegion 0 1.36 0.65 2.93 6.52 3.43 4.12 1.27 3.30 12.99 5.48 1.86 5.72 0.00 3.37 6.51 14.30 5.29 2.65 5.11 2.05 6.36 1.34 2.83 59 E10_Aa NovelBoundary 0 3.41 0.00 2.99 13.68 4.07 0.00 1.94 4.19 16.64 7.12 0.00 0.00 6.82 4.89 0.00 28.37 11.97 1.66 4.33 0.00 5.56 2.45 3.76 60 ER10a ExonRegion 0 32.72 6.01 49.49 34.57 26.36 34.21 17.94 42.48 17.65 21.99 33.05 13.70 12.70 58.68 56.99 87.93 36.95 21.65 12.04 22.16 32.69 14.60 15.17 61 E10_Da NovelBoundary 0 27.49 13.02 19.72 24.24 28.95 24.59 5.83 27.81 26.19 28.37 10.84 0.00 12.66 57.80 35.35 66.31 17.02 19.48 37.18 16.36 16.80 2.57 16.73 62 E10a_E11a KnownJunction 0 0.00 0.00 12.06 1.70 0.00 0.00 2.25 1.68 3.50 2.87 4.05 0.00 0.00 4.18 5.56 0.00 0.00 4.60 0.00 3.13 0.00 0.00 0.00 63 E10a_E12a KnownJunction 0 20.23 0.00 21.02 21.18 12.05 10.62 1.81 32.78 7.81 11.39 7.26 0.00 24.02 27.14 17.80 47.59 13.65 11.52 3.67 8.18 16.31 6.25 12.63 64 I10 Intron 0 18.14 3.65 36.35 27.51 15.24 16.94 15.49 22.74 17.28 24.64 14.88 5.92 7.59 29.98 31.15 52.77 22.02 19.37 15.36 17.90 7.69 4.81 17.03 65 I10_SR1 SilentIntronRegion 1 18.15 3.66 36.39 27.54 15.25 16.95 15.50 22.76 17.30 24.67 14.89 5.93 7.59 30.01 31.18 52.82 22.04 19.39 15.38 17.92 7.70 4.82 17.04 66 E11_Aa NovelBoundary 0 23.93 26.25 24.66 15.78 51.27 28.68 29.06 15.94 17.82 5.32 6.63 31.21 19.15 6.65 22.99 28.03 11.69 4.15 14.97 18.92 7.66 2.88 7.00 67 ER11a ExonRegion 0 39.80 20.89 37.57 34.65 23.53 22.07 35.87 32.78 32.24 24.96 14.20 17.71 16.87 12.99 29.40 51.87 32.14 25.76 20.26 32.93 12.55 7.88 30.59 68 E11_Da NovelBoundary 0 79.94 17.37 108.48 85.10 34.55 49.69 23.32 70.98 49.68 50.90 13.00 7.50 61.03 14.89 34.49 89.81 42.17 48.96 29.84 37.07 8.59 16.29 38.67 69 I11 Intron 0 35.65 7.29 59.24 30.09 12.52 30.32 16.52 27.72 18.08 23.19 17.48 13.86 9.55 26.43 32.23 44.04 15.96 20.34 17.88 18.58 12.37 5.85 10.99 70 I11_SR1 SilentIntronRegion 0 35.76 7.32 59.41 30.18 12.56 30.41 16.57 27.80 18.14 23.27 17.54 13.90 9.58 26.51 32.33 44.17 16.01 20.40 17.94 18.63 12.40 5.87 11.03 71 E12_Aa NovelBoundary 1 27.41 2.57 97.16 38.09 18.85 34.47 16.34 30.52 23.00 25.65 14.00 0.00 6.82 7.18 67.12 36.74 8.60 26.82 45.27 25.31 5.25 2.76 20.91 72 ER12a ExonRegion 0 34.57 4.10 75.45 47.50 11.95 26.11 15.43 49.11 26.19 37.50 22.77 10.71 8.42 45.09 65.48 66.21 24.95 18.58 20.62 27.99 27.78 14.34 16.88