Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMUB2 Gene 0 147.25 66.72 180.15 124.25 114.00 206.30 128.12 212.21 141.03 220.65 70.78 45.22 46.59 117.80 129.94 107.34 81.86 105.08 104.71 99.39 149.61 97.58 97.06 2 357984 Transcript 0 17.41 8.81 34.22 19.17 29.10 73.43 40.90 25.79 21.24 25.37 17.54 4.19 0.00 18.24 11.45 25.73 14.96 22.14 28.91 23.36 19.03 18.01 26.12 3 319511 Transcript 0 84.83 42.55 107.26 67.41 68.37 184.55 99.33 122.04 89.03 165.02 46.77 26.23 21.66 54.16 49.62 49.17 47.37 65.35 79.21 61.03 80.72 55.01 58.34 4 446571 Transcript 0 0.00 0.00 1.71 2.00 3.82 2.27 2.16 4.27 1.71 0.00 0.00 0.00 0.00 2.47 5.19 0.00 4.77 0.00 0.00 3.20 8.09 3.12 3.24 5 ER1a ExonRegion 1 34.82 17.61 35.24 20.59 58.20 146.85 73.77 36.92 29.26 35.13 35.07 2.83 0.00 34.19 22.91 47.10 29.92 32.92 53.02 40.97 38.07 36.02 44.81 6 E1_Da NovelBoundary 0 10.74 3.09 3.13 4.93 11.38 2.33 10.25 8.13 10.59 4.03 15.32 6.30 25.97 11.54 13.35 15.30 20.38 7.34 0.00 4.99 25.27 0.00 0.00 7 E1a_E3a NovelJunction 0 14.08 13.35 10.26 6.33 9.68 17.72 7.29 17.13 9.23 15.28 7.95 11.40 5.68 8.77 8.65 9.74 3.55 3.15 0.00 9.72 0.00 0.00 3.24 8 E1a_E3b KnownJunction 0 0.00 0.00 33.20 17.75 0.00 0.00 8.04 14.66 13.22 15.61 0.00 5.55 0.00 2.30 0.00 4.36 0.00 11.36 4.80 5.75 0.00 0.00 7.43 9 I1 Intron 1 1.50 0.00 0.00 0.00 1.90 2.60 4.69 0.00 0.00 1.21 15.06 0.00 0.00 0.00 6.41 2.11 4.68 0.00 2.26 0.00 9.37 0.00 2.08 10 I1_AR1 ActiveIntronRegion 1 1.52 0.00 0.00 0.00 1.92 2.63 4.76 0.00 0.00 1.21 15.27 0.00 0.00 0.00 6.50 2.13 4.74 0.00 2.29 0.00 9.50 0.00 2.11 11 ER2a ExonRegion 0 76.08 42.46 74.95 44.61 72.34 184.21 94.58 99.51 80.16 129.52 48.11 23.79 16.28 61.87 46.13 60.51 44.35 51.95 54.85 50.92 93.01 57.17 53.04 12 E2_Da NovelBoundary 0 58.16 15.39 6.95 24.31 0.00 7.44 24.42 70.69 33.04 55.90 17.32 17.41 20.45 19.48 14.46 24.44 0.00 6.30 16.66 8.88 2.41 11.82 4.35 13 E2a_E3a KnownJunction 0 57.27 33.55 106.18 71.62 47.62 165.98 82.19 98.29 68.08 153.89 23.74 12.15 6.17 29.14 18.30 12.39 27.02 55.55 35.39 57.14 41.33 29.88 28.26 14 E2a_E3b NovelJunction 0 16.97 2.89 10.82 3.96 16.47 10.11 6.05 17.87 6.02 14.88 10.37 6.30 6.01 19.90 37.09 11.71 16.92 13.06 7.91 9.40 14.02 25.84 19.63 15 I2 Intron 0 34.37 28.60 17.23 18.11 30.75 27.05 23.99 39.32 23.36 31.46 23.65 30.00 16.45 34.79 21.41 30.25 19.63 11.24 14.21 17.64 25.69 10.84 14.94 16 I2_AR1 ActiveIntronRegion 0 29.07 15.97 15.76 19.65 30.07 29.53 27.95 38.93 24.63 35.37 30.15 43.53 24.21 39.99 22.27 30.34 21.15 12.79 15.03 21.53 33.25 12.39 14.55 17 I2_SR2 SilentIntronRegion 1 42.65 43.12 20.52 19.50 33.23 29.06 23.64 44.46 24.29 31.68 19.52 21.28 11.71 33.48 22.21 31.47 19.17 9.93 13.47 16.73 22.20 11.29 15.38 18 I2_AR2 ActiveIntronRegion 1 21.69 17.15 9.50 5.55 26.87 7.63 10.04 19.76 16.34 16.17 18.54 15.44 6.32 22.46 16.99 29.76 18.80 13.42 17.73 5.89 11.34 2.17 18.13 19 ER3a ExonRegion 0 121.12 51.65 140.65 86.00 85.14 203.47 121.22 168.31 118.85 211.63 68.46 42.75 42.53 71.46 84.43 74.61 70.74 88.57 147.40 75.02 107.83 77.99 93.74 20 E3_Ab KnownBoundary 0 95.42 73.41 85.39 49.38 89.73 165.53 94.24 133.45 90.57 149.41 34.54 48.92 54.05 66.57 82.33 48.62 41.23 77.02 66.35 76.64 100.88 42.19 51.22 21 E3_Ac KnownBoundary 1 86.90 27.43 121.26 111.91 32.26 121.63 132.89 186.19 121.84 199.50 65.07 111.94 46.59 156.75 186.29 116.38 57.32 97.62 89.79 108.21 161.36 54.38 91.68 22 ER3b ExonRegion 1 74.67 45.47 139.94 93.55 54.26 148.39 123.82 189.78 128.45 214.56 56.13 87.46 49.53 118.37 126.15 90.95 64.83 108.87 89.57 90.72 143.33 56.51 77.53 23 ER3c ExonRegion 0 105.94 45.64 189.13 120.29 103.94 236.03 120.94 235.67 156.54 277.53 93.22 57.97 40.29 144.92 143.52 118.92 91.42 124.39 130.37 127.09 185.88 97.69 106.34 24 E3_Da KnownBoundary 0 104.24 70.45 170.07 112.44 94.91 256.44 157.66 188.16 128.33 224.11 43.43 18.91 41.39 105.25 117.07 104.67 65.73 104.50 143.35 106.36 125.10 31.66 79.13 25 E3a_E3d KnownJunction 0 0.00 0.00 1.71 2.00 3.82 2.27 2.16 4.27 1.71 0.00 0.00 0.00 0.00 2.47 5.19 0.00 4.77 0.00 0.00 3.20 8.09 3.12 3.24 26 E3a_E4a NovelJunction 0 3.78 3.03 21.76 9.02 24.02 34.75 10.38 32.65 9.72 46.23 0.00 0.00 0.00 12.71 4.45 3.33 0.00 4.81 3.58 3.26 23.66 5.63 29.02 27 ER3d ExonRegion 0 77.16 44.41 110.79 66.01 69.35 171.02 120.18 150.07 102.87 160.38 62.22 26.44 25.04 84.18 104.76 86.01 68.08 109.74 66.27 91.57 143.69 62.38 68.22 28 E3_Ad KnownBoundary 1 136.25 37.69 193.78 94.39 125.72 188.58 91.59 232.60 131.51 205.92 106.50 12.00 68.50 106.13 95.43 117.32 75.27 148.36 127.91 76.13 159.88 66.07 85.62 29 ER3e ExonRegion 0 79.48 28.72 205.23 111.70 68.65 151.01 74.75 227.40 159.55 210.61 73.85 39.04 53.34 137.91 183.66 146.34 115.98 148.20 138.18 116.32 179.32 119.95 112.75 30 E3b_E4a KnownJunction 0 106.09 18.29 162.97 78.41 76.66 190.34 80.95 130.08 127.40 168.48 78.18 25.66 47.24 114.31 97.53 112.02 117.34 76.94 56.75 100.73 156.54 84.93 63.34 31 I3 Intron 0 23.96 8.34 19.46 15.99 10.53 25.26 10.64 36.33 21.73 24.66 10.78 3.93 2.04 13.18 12.87 13.66 5.95 11.15 21.42 17.11 18.79 8.88 13.48 32 I3_AR2 ActiveIntronRegion 1 46.03 13.60 24.41 25.45 14.52 39.08 11.07 59.22 29.23 33.55 14.54 7.03 5.19 16.05 15.41 18.64 11.04 13.06 39.95 20.47 25.79 12.19 23.32 33 E4_Aa NovelBoundary 0 56.45 33.35 29.98 26.50 80.05 53.21 33.39 90.53 34.72 63.21 15.90 5.40 20.45 11.71 14.83 3.85 21.51 15.01 12.14 9.33 13.96 13.78 16.05 34 ER4a ExonRegion 0 200.89 72.15 232.78 159.72 146.25 247.26 157.31 273.66 183.93 286.06 86.71 53.40 67.01 173.62 175.06 135.25 107.67 119.43 137.19 135.80 199.47 123.32 128.36 35 E4_Da KnownBoundary 1 446.60 121.89 318.71 226.58 304.50 370.30 292.58 299.14 176.79 314.15 75.60 61.82 112.01 242.51 232.15 151.16 93.31 131.03 186.92 151.74 196.64 115.73 129.15 36 ER4b ExonRegion 0 224.69 105.48 250.54 189.68 156.95 220.48 159.33 284.72 176.07 270.73 77.88 60.18 67.07 138.09 171.44 128.55 95.40 128.92 116.20 114.78 168.35 123.80 117.46 37 IG46 Intergenic 0 2.88 1.38 0.00 0.00 5.46 1.25 7.20 0.00 0.00 0.00 1.31 0.00 0.00 2.73 1.39 2.02 0.00 0.00 0.00 5.79 8.99 1.42 3.99 38 IG46_AR1 ActiveIntergenicRegion 0 2.96 1.42 0.00 0.00 5.61 1.28 7.38 0.00 0.00 0.00 1.35 0.00 0.00 2.80 1.43 2.08 0.00 0.00 0.00 5.95 9.15 1.46 4.10