Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ASB16 Gene 0 12.87 6.69 24.43 17.63 13.97 11.46 16.64 28.07 17.77 32.23 12.86 6.21 6.98 26.30 32.56 31.46 20.38 27.31 17.54 21.00 11.03 5.46 14.77 2 293414 Transcript 0 4.63 3.19 10.69 8.93 4.82 3.58 5.90 15.77 11.87 15.28 4.48 2.54 2.06 7.74 9.93 9.01 7.59 10.37 5.55 7.88 3.94 2.19 4.64 3 IG44 Intergenic 0 6.59 5.19 24.08 24.32 12.47 4.45 9.51 27.75 18.01 34.70 1.51 1.17 1.66 1.65 4.08 4.46 2.42 11.64 7.78 12.43 4.82 1.53 4.83 4 IG44_SR1 SilentIntergenicRegion 0 6.48 5.26 24.35 25.45 13.26 4.61 9.71 28.18 18.49 34.80 1.42 1.28 1.67 1.54 4.00 4.63 2.41 12.20 8.03 12.60 4.76 1.59 4.71 5 IG44_AR1 ActiveIntergenicRegion 0 6.79 5.52 23.54 14.59 6.79 2.42 10.98 26.53 16.27 33.88 3.04 0.00 4.28 4.41 4.62 3.17 3.70 6.46 8.54 11.20 8.33 0.00 8.65 6 IG44_SR2 SilentIntergenicRegion 0 8.40 3.91 19.90 9.96 1.89 2.80 5.33 21.22 10.66 33.87 2.36 0.00 0.03 2.01 5.09 2.24 2.02 4.71 3.13 10.21 4.02 1.27 4.92 7 ER1a ExonRegion 0 1.40 3.77 18.21 13.22 3.91 2.17 7.15 16.76 13.21 27.18 2.76 0.47 0.00 2.02 4.47 4.33 3.20 6.71 8.44 10.13 7.01 1.53 6.22 8 E1_Da NovelBoundary 0 6.67 0.00 17.53 19.48 4.33 0.00 9.80 26.90 7.38 30.89 0.00 5.40 0.00 2.47 4.45 7.60 0.00 15.01 0.00 6.52 3.15 0.00 4.44 9 E1a_E2a KnownJunction 0 0.00 0.00 1.69 9.26 0.00 2.78 1.99 15.90 1.13 8.14 4.90 0.00 0.00 2.47 0.00 0.00 4.77 0.00 0.00 0.00 0.00 2.94 0.00 10 I1 Intron 0 4.87 3.40 11.25 12.95 10.35 4.02 6.50 20.73 10.77 26.26 1.62 0.75 0.40 1.81 3.89 4.04 3.45 7.40 3.33 4.22 2.99 1.09 2.15 11 I1_SR1 SilentIntronRegion 0 5.33 3.92 8.05 9.83 7.39 5.06 6.46 17.52 7.85 23.22 1.47 0.69 0.75 1.41 3.69 4.41 1.83 5.61 3.61 3.97 1.48 1.13 1.13 12 I1_AR1 ActiveIntronRegion 0 4.36 2.81 15.16 16.77 13.96 2.83 6.61 24.73 14.34 30.11 1.80 0.82 0.00 2.29 4.16 3.63 5.41 9.59 3.03 4.57 4.82 1.05 3.37 13 E2_Aa NovelBoundary 0 3.48 2.43 19.96 27.44 31.83 5.05 4.50 30.52 17.25 26.22 0.00 0.00 6.17 2.47 0.00 0.00 11.22 14.30 0.00 5.75 8.09 0.00 0.00 14 ER2a ExonRegion 0 8.06 4.64 17.48 23.08 10.16 0.37 6.61 31.20 15.13 26.08 2.65 2.04 2.21 2.96 10.89 2.83 9.23 13.33 3.64 10.94 4.61 3.73 3.35 15 E2_Da NovelBoundary 0 36.90 6.38 27.85 51.48 56.03 2.67 9.01 36.06 13.48 47.49 0.00 0.00 6.33 0.00 18.54 0.00 4.39 9.29 4.80 11.95 5.75 2.51 0.00 16 E2a_E3a KnownJunction 0 0.00 0.00 4.08 0.00 0.00 0.00 0.00 7.35 7.67 6.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 17 I2 Intron 0 15.44 7.06 12.59 12.63 27.79 5.94 17.44 18.83 8.40 19.87 0.80 3.53 6.45 2.25 6.73 9.87 2.74 6.57 9.00 9.15 4.02 0.69 6.83 18 I2_SR1 SilentIntronRegion 0 15.49 7.08 12.63 12.67 27.88 5.96 17.50 18.88 8.43 19.94 0.81 3.54 6.47 2.26 6.76 9.91 2.75 6.59 9.03 9.18 4.03 0.69 6.85 19 E3_Aa NovelBoundary 0 60.16 21.97 155.08 82.74 138.62 42.42 46.90 159.82 55.09 175.57 77.76 17.56 39.61 79.76 121.76 83.74 81.25 83.61 51.86 88.91 59.92 22.53 32.61 20 ER3a ExonRegion 0 0.21 0.36 1.46 0.85 0.00 0.19 0.16 1.13 2.74 1.00 0.20 0.37 0.00 0.01 0.23 0.31 0.80 1.51 0.00 0.46 1.35 0.01 0.00 21 E3_Da NovelBoundary 0 55.27 12.70 135.21 42.19 34.72 23.40 47.21 105.89 34.06 130.41 42.17 23.86 12.66 62.33 83.69 72.12 48.34 65.83 49.70 69.16 48.87 13.78 51.64 22 E3a_E4a KnownJunction 0 0.00 3.03 5.23 1.30 0.00 0.00 0.00 0.00 14.12 4.35 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 23 E4_Aa NovelBoundary 0 116.17 19.21 231.30 134.52 55.69 46.96 83.16 264.43 86.52 277.89 158.78 12.00 32.14 106.78 140.68 250.02 126.79 190.31 161.42 191.37 107.18 47.95 59.07 24 ER4a ExonRegion 0 0.41 0.66 3.19 1.26 0.09 0.00 2.23 4.88 9.76 3.67 0.78 0.27 0.00 0.01 0.00 0.00 1.01 3.08 0.00 3.47 0.99 0.00 0.00 25 E4_Da NovelBoundary 0 2.74 14.60 124.89 59.97 47.54 46.39 48.09 100.75 52.95 160.26 63.75 18.31 29.22 62.16 119.04 72.80 83.96 56.29 42.35 90.12 47.51 10.29 18.18 26 E4a_E5a KnownJunction 0 3.56 3.35 0.00 2.00 0.00 0.00 0.00 14.54 13.02 3.28 0.00 5.70 0.00 0.00 0.00 0.00 0.00 8.75 0.00 3.26 0.00 0.00 0.00 27 Ix Intron 1 47.29 16.31 90.00 42.45 28.49 18.80 30.80 92.10 34.60 105.59 45.22 27.15 16.72 75.15 85.42 83.21 64.21 79.09 48.99 60.69 32.15 19.99 33.20 28 Ix_SR1 SilentIntronRegion 0 60.94 17.89 89.03 46.33 31.04 24.42 32.85 87.64 37.45 113.82 48.87 28.87 17.98 73.44 82.57 95.11 65.53 92.67 48.97 58.92 34.90 20.24 36.95 29 Ix_AR1 ActiveIntronRegion 0 20.84 13.38 93.32 35.36 23.81 7.90 27.19 102.41 29.45 90.82 38.66 24.13 14.47 79.71 92.39 60.78 62.59 53.24 49.78 65.15 27.16 19.80 26.22 30 E5_Aa NovelBoundary 1 12.97 30.06 86.84 81.28 44.23 21.12 38.42 119.48 33.19 100.03 42.75 12.60 6.82 50.50 118.43 146.37 34.69 131.86 60.14 55.99 31.32 30.37 59.58 31 ER5a ExonRegion 0 28.07 12.93 44.90 29.43 29.17 26.71 34.96 50.18 30.05 57.55 29.06 14.05 16.32 62.20 73.82 73.63 44.80 58.22 37.88 42.63 21.47 11.48 32.20