Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LSM12 Gene 0 153.00 142.75 123.00 68.71 99.71 91.91 122.93 134.14 53.64 139.95 114.41 144.47 142.91 119.65 144.58 115.99 87.70 64.25 67.31 77.37 70.46 120.99 72.07 2 411445 Transcript 0 1.48 0.51 1.90 1.86 2.94 0.00 1.32 4.97 1.11 2.64 7.73 7.25 3.90 3.74 5.95 3.86 9.41 1.39 1.43 6.92 8.96 2.71 2.06 3 293406 Transcript 1 2.82 2.43 38.02 1.30 4.07 2.27 0.00 18.48 18.75 51.98 135.72 19.66 23.86 74.28 50.56 28.03 165.87 13.76 26.92 57.46 133.19 19.41 29.71 4 ER1a ExonRegion 0 17.46 11.44 16.09 2.78 12.08 30.26 17.64 12.65 8.47 21.88 39.33 2.18 3.97 27.78 22.14 36.26 41.09 14.16 17.50 19.92 51.76 23.09 27.93 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.53 0.00 0.00 0.00 5.09 0.00 0.00 0.00 5.40 7.79 0.00 0.00 0.00 0.00 0.00 0.00 3.20 3.15 0.00 0.00 6 E1a_E2b KnownJunction 1 2.82 2.43 38.02 1.30 4.07 2.27 0.00 18.48 18.75 51.98 135.72 19.66 23.86 74.28 50.56 28.03 165.87 13.76 26.92 57.46 133.19 19.41 29.71 7 ER2a ExonRegion 0 2.96 1.02 3.80 2.18 5.89 0.00 2.65 4.84 2.22 5.28 15.46 9.09 0.00 7.47 11.90 7.73 18.82 2.77 2.87 10.64 14.76 5.42 4.11 8 ER2b ExonRegion 1 2.21 2.26 19.03 6.74 10.44 16.85 5.87 17.23 11.00 24.71 21.67 6.90 1.48 41.37 36.08 80.27 23.43 26.45 33.63 29.42 23.11 42.92 65.31 9 E2_Da NovelBoundary 0 6.96 5.26 13.99 12.32 11.12 4.43 13.47 19.72 11.52 14.40 5.32 0.00 6.82 0.00 13.35 3.76 13.09 7.59 9.60 32.15 3.15 3.12 13.06 10 E2a_E3a KnownJunction 0 2.82 12.63 13.33 10.45 42.87 93.41 42.93 11.17 12.41 10.85 13.85 10.50 25.16 5.89 0.00 11.54 13.84 21.64 13.37 2.68 13.71 7.78 3.67 11 I2 Intron 0 12.36 11.78 23.35 17.72 19.16 5.71 28.81 19.88 7.87 17.32 3.86 10.54 9.73 2.38 11.39 15.30 12.31 9.46 10.00 24.66 5.93 3.85 13.19 12 I2_AR1 ActiveIntronRegion 0 3.79 11.87 12.12 7.58 7.83 4.32 18.56 12.43 4.88 10.62 3.44 9.59 8.07 1.60 13.06 9.39 10.58 3.32 5.38 21.60 3.38 3.86 8.87 13 I2_SR1 SilentIntronRegion 0 6.86 13.17 15.84 15.77 18.28 6.08 30.86 14.82 8.49 15.25 4.55 12.68 10.65 1.97 11.41 13.63 10.32 4.79 6.49 30.51 5.48 2.10 11.34 14 I2_AR2 ActiveIntronRegion 0 8.92 12.60 27.70 26.48 28.20 5.63 31.70 26.24 14.07 20.83 6.70 10.34 13.50 2.67 18.24 18.80 14.80 6.73 14.85 30.08 4.54 5.64 15.73 15 I2_SR2 SilentIntronRegion 0 13.90 11.55 24.85 17.92 19.26 5.74 28.78 20.66 7.41 17.78 3.56 10.25 9.38 2.47 10.85 15.50 12.68 10.70 10.52 23.44 6.16 4.04 13.59 16 E3_Aa NovelBoundary 0 13.56 17.76 30.31 10.29 3.65 5.22 11.00 17.54 9.29 10.21 9.48 37.81 30.19 4.71 15.20 12.22 18.33 12.56 26.73 40.91 8.65 4.84 10.93 17 ER3a ExonRegion 0 2.92 12.85 2.11 1.86 6.59 46.80 34.13 0.00 1.13 1.14 4.20 5.31 1.79 1.52 0.84 1.38 1.05 2.18 0.00 1.33 2.08 1.61 0.00 18 E3_Da NovelBoundary 0 18.23 8.42 30.19 14.18 27.16 0.00 14.18 24.27 7.81 31.51 18.11 12.60 6.82 4.59 10.75 11.71 13.56 18.12 9.51 22.31 11.86 10.72 7.09 19 E3a_E4a KnownJunction 0 21.11 50.71 20.67 14.82 4.16 7.50 12.23 19.02 10.85 20.52 50.70 27.76 12.82 17.19 11.99 35.20 17.02 10.45 4.71 5.56 7.85 5.57 7.09 20 E3a_E5a NovelJunction 0 0.00 8.42 10.02 5.39 0.00 0.00 2.08 3.74 2.58 4.06 7.11 0.00 0.00 0.00 0.00 0.00 13.46 8.71 0.00 0.00 0.00 0.00 0.00 21 E4_Aa NovelBoundary 0 20.15 17.76 38.82 33.23 7.13 28.28 7.24 36.02 17.19 20.76 4.74 0.00 6.82 7.42 5.93 19.14 13.28 25.08 17.32 20.01 12.23 15.37 20.15 22 ER4a ExonRegion 0 31.48 11.19 2.61 0.71 2.17 1.47 3.38 0.00 0.22 1.37 0.00 1.23 0.00 0.66 0.91 1.22 0.42 0.01 0.00 0.55 1.01 2.56 0.00 23 E4_Da NovelBoundary 0 13.41 12.50 32.05 30.17 14.94 7.89 31.49 15.16 4.43 11.77 2.68 23.71 20.62 4.94 14.59 15.55 21.32 14.76 13.27 23.39 8.22 8.88 12.63 24 E4a_E5a KnownJunction 0 41.27 27.56 16.50 3.40 32.51 23.96 1.85 10.88 8.10 20.84 38.75 30.76 55.03 4.24 0.00 16.49 11.78 14.84 12.05 7.54 2.35 3.00 8.02 25 E5_Aa NovelBoundary 0 9.63 9.14 16.00 11.95 33.19 5.17 29.01 31.71 5.73 32.56 0.00 0.00 0.00 4.94 9.89 26.75 0.00 6.30 3.95 32.09 17.17 2.57 27.15 26 ER5a ExonRegion 0 207.27 194.89 166.65 94.44 135.32 118.41 165.18 183.20 72.28 188.99 150.68 199.63 197.99 158.47 194.49 148.85 113.24 84.83 88.11 101.87 87.45 160.83 90.49 27 IG39 Intergenic 0 6.49 9.36 19.67 14.62 17.65 8.15 21.58 42.94 12.77 22.00 2.69 7.74 5.46 3.93 6.53 9.23 8.19 13.53 14.13 26.12 6.06 4.24 12.84 28 IG39_AR1 ActiveIntergenicRegion 0 13.44 12.88 23.23 15.20 28.31 10.55 37.10 67.97 16.58 28.11 6.98 12.11 11.24 4.31 3.88 9.87 16.73 16.06 22.03 35.31 9.89 8.44 15.04 29 IG39_SR1 SilentIntergenicRegion 0 6.02 9.13 19.44 14.59 16.95 8.00 20.55 41.29 12.52 21.60 2.40 7.45 5.08 3.90 6.71 9.19 7.63 13.37 13.61 25.52 5.81 3.96 12.70