Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FKBP10 Gene 0 62.13 23.18 464.41 55.01 28.65 23.38 36.05 47.39 23.64 96.93 0.64 0.34 0.32 5.56 0.61 0.18 0.43 142.74 283.71 138.50 1492.53 678.72 789.70 2 269598 Transcript 0 0.68 0.76 6.68 0.00 2.16 0.77 3.06 0.00 0.30 4.12 0.00 0.00 0.00 1.20 0.00 0.00 0.00 7.14 18.01 5.85 29.06 2.99 12.86 3 429461 Transcript 0 3.19 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 4 321562 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 489591 Transcript 0 12.09 3.03 111.01 15.02 7.66 5.09 12.54 4.56 3.28 21.79 0.00 0.00 0.40 2.33 0.21 0.00 0.34 37.41 54.48 39.11 107.52 103.76 134.16 6 414352 Transcript 0 27.63 10.00 227.90 27.84 12.90 10.79 23.36 38.94 18.66 80.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.39 192.19 99.20 1142.08 613.44 508.85 7 357255 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 487489 Transcript 0 13.43 7.50 98.87 21.88 5.86 3.08 9.27 11.00 9.65 32.60 0.87 2.13 1.17 1.77 2.10 2.23 1.48 61.87 98.33 42.78 103.91 106.80 117.50 9 455106 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 490938 Transcript 0 33.30 13.45 387.60 71.64 22.48 22.56 40.13 19.53 10.66 86.02 1.18 0.00 0.00 4.30 0.00 0.00 0.00 139.05 180.00 110.49 397.69 449.63 416.52 11 464180 Transcript 0 15.74 8.18 174.48 18.49 12.01 8.06 13.02 9.28 5.56 43.52 0.62 0.00 0.00 2.00 0.00 0.00 0.69 66.49 76.28 55.28 152.55 116.17 206.84 12 ER1a ExonRegion 0 1.10 2.28 6.97 0.00 2.61 2.31 9.17 0.00 0.90 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.23 26.78 8.80 45.05 2.03 18.02 13 E1_Ab KnownBoundary 0 7.04 2.83 10.50 0.00 12.73 0.00 24.07 0.00 1.42 10.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.23 40.75 8.69 38.67 3.12 22.02 14 ER1b ExonRegion 0 1.15 0.18 8.64 0.00 0.69 0.00 5.63 1.00 0.16 5.36 0.00 0.00 0.00 2.99 0.00 0.00 2.55 7.39 24.71 13.91 58.40 6.60 9.90 15 E1_Da KnownBoundary 0 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 4.78 0.00 0.00 0.00 2.41 0.00 0.00 0.00 1.82 18.73 2.36 31.51 2.94 7.60 16 E1a_E1f KnownJunction 0 3.19 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 17 E1_Ac KnownBoundary 0 0.00 0.00 8.19 0.00 7.89 0.00 2.21 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 17.88 6.52 12.91 6.25 21.60 18 ER1c ExonRegion 0 0.94 0.00 13.07 0.00 3.86 0.00 0.00 0.00 0.00 8.28 0.00 0.00 0.00 3.61 0.00 0.00 0.00 15.19 27.25 8.75 42.12 6.95 20.56 19 ER1d ExonRegion 0 17.95 2.84 22.67 2.40 10.38 5.60 6.03 2.53 1.26 15.33 0.00 0.00 0.00 1.76 0.00 0.00 0.00 18.03 48.55 29.38 137.85 80.36 186.98 20 E1_Ad KnownBoundary 0 69.42 9.93 10.11 3.76 21.65 28.28 17.49 2.42 1.79 10.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.55 135.82 55.35 334.22 242.42 680.51 21 E1_Ae KnownBoundary 0 24.97 12.50 63.51 14.05 15.96 7.72 20.58 4.89 7.75 28.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 40.94 34.71 190.27 136.98 218.79 22 ER1e ExonRegion 0 42.33 8.13 41.66 5.45 21.41 18.34 19.15 5.30 3.71 24.54 0.00 0.00 0.00 3.25 0.00 0.00 0.00 16.51 96.20 57.45 328.94 211.55 444.41 23 ER1f ExonRegion 0 30.98 8.69 157.98 10.75 14.02 16.76 18.02 20.93 8.83 59.81 0.00 0.00 0.00 3.61 0.00 0.00 0.00 56.04 203.68 82.87 992.99 333.66 810.00 24 E1_Af KnownBoundary 0 17.34 3.35 369.74 29.90 4.16 2.44 1.85 43.58 29.98 137.69 0.00 0.00 0.00 2.41 0.00 0.00 0.00 181.48 392.86 228.06 2242.15 836.76 890.85 25 ER1g ExonRegion 0 20.30 11.66 402.06 40.36 25.48 14.73 18.60 52.30 33.29 115.82 1.15 0.00 0.00 5.08 0.00 0.00 0.00 209.53 607.66 212.39 2006.76 981.58 2323.91 26 E1b_E2a KnownJunction 0 56.01 15.26 414.68 37.06 44.74 40.49 34.36 50.69 30.06 112.34 0.00 0.00 0.00 7.00 0.00 0.00 0.00 175.14 282.17 201.47 2240.23 655.50 1485.92 27 E1b_E3a KnownJunction 0 0.00 0.00 32.41 1.37 7.39 0.00 6.49 0.00 1.74 4.38 0.00 0.00 0.00 2.47 0.00 0.00 0.00 16.21 4.05 8.82 24.22 36.56 81.86 28 ER2a ExonRegion 0 37.17 19.19 450.05 41.10 30.72 38.72 50.95 59.43 40.59 119.94 0.00 0.00 0.00 6.27 1.81 0.00 0.00 204.05 364.53 244.81 2721.96 891.60 846.20 29 E2a_E3a KnownJunction 0 93.35 20.46 569.79 59.07 11.54 42.48 44.12 64.49 34.00 132.89 2.58 0.00 0.00 7.06 0.00 0.00 0.00 202.91 298.83 251.77 3177.89 1004.35 900.32 30 ER3a ExonRegion 0 66.93 13.85 511.48 53.02 24.25 34.15 38.31 64.17 33.58 126.30 0.00 0.00 0.00 15.02 1.54 0.00 0.00 164.16 322.72 265.42 3176.99 1050.68 823.27 31 E3_Da KnownBoundary 0 61.12 8.95 381.48 41.05 28.95 26.29 31.66 37.09 26.94 89.15 0.00 0.00 0.00 14.95 0.00 0.00 0.00 97.54 304.95 226.08 2489.38 833.76 644.32 32 E3_Db KnownBoundary 0 94.91 22.30 439.28 40.45 77.93 21.64 47.74 57.05 33.71 81.96 0.00 0.00 0.00 25.43 0.00 0.00 0.00 160.76 237.09 273.76 2736.18 831.55 717.65 33 E3b_E4b KnownJunction 0 27.63 10.00 227.90 27.84 12.90 10.79 23.36 38.94 18.66 80.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.39 192.19 99.20 1142.08 613.44 508.85 34 ER3b ExonRegion 0 79.31 18.94 546.26 58.82 52.81 25.77 45.36 63.68 41.99 123.08 0.00 0.00 0.00 27.78 0.00 0.00 0.00 191.19 330.94 317.69 3364.14 1049.11 866.93 35 ER3c ExonRegion 0 81.19 27.96 651.27 69.33 30.99 26.37 42.20 82.23 50.62 145.48 0.71 0.00 0.00 11.89 1.98 0.00 0.00 278.01 536.17 295.19 3390.05 1477.01 1424.80 36 E3c_E4a KnownJunction 0 58.83 35.98 819.99 84.54 39.30 62.75 69.47 94.76 48.26 157.17 0.00 0.00 0.00 9.54 4.45 0.00 0.00 274.38 478.04 373.08 3936.52 1321.05 1538.16 37 E3c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER4a ExonRegion 0 47.16 23.99 619.00 77.06 41.13 48.88 59.88 89.79 43.43 137.42 0.00 0.00 0.00 13.62 0.48 0.00 0.00 206.55 316.78 259.44 3507.20 1097.77 1117.69 39 E4_Ab KnownBoundary 0 86.09 42.69 587.24 88.93 48.13 64.11 66.60 89.05 42.91 157.30 0.00 0.00 0.00 2.12 0.00 0.00 0.00 223.77 446.88 259.70 3403.69 1431.03 1446.39 40 ER4b ExonRegion 0 65.08 31.61 646.37 72.23 25.03 39.72 64.85 94.53 44.54 184.82 0.00 0.00 0.00 12.25 0.00 0.00 0.00 286.67 729.45 295.96 3538.57 2172.16 2153.77 41 E4_Da NovelBoundary 0 17.34 0.00 216.85 24.71 8.32 8.46 19.87 5.87 5.73 40.75 0.00 0.00 0.00 2.35 0.00 0.00 0.00 45.06 70.97 104.25 160.87 71.34 86.73 42 E4a_E5b KnownJunction 0 116.02 39.73 774.10 85.77 45.84 48.21 53.53 115.91 61.46 197.49 0.00 0.00 0.00 4.77 0.00 0.00 0.00 298.17 867.98 270.82 4102.94 2666.35 2676.73 43 E5_Aa NovelBoundary 0 7.26 12.10 25.78 21.58 11.80 13.46 6.05 25.18 16.17 13.43 5.05 0.00 15.42 0.00 5.44 11.62 27.49 21.18 8.56 11.12 22.36 10.53 19.89 44 ER5a ExonRegion 0 13.43 7.50 98.87 21.88 5.86 3.08 9.27 11.00 9.65 32.60 0.87 2.13 1.17 1.77 2.10 2.23 1.48 61.87 98.33 42.78 103.91 106.80 117.50 45 E5_Ab KnownBoundary 0 20.67 11.12 195.59 29.27 18.17 8.46 30.12 5.46 6.28 53.70 0.00 0.00 0.00 2.18 0.00 0.00 0.00 98.04 271.91 88.40 187.56 157.49 330.53 46 ER5b ExonRegion 0 66.13 40.49 772.31 89.68 50.60 35.21 49.02 108.97 51.05 209.58 0.69 0.00 0.00 13.32 0.00 0.00 0.00 316.29 613.57 278.39 4407.76 1566.67 1715.20 47 E5_Ac KnownBoundary 0 77.20 48.35 745.63 83.94 72.75 39.13 69.47 113.86 51.30 187.47 2.42 0.00 0.00 17.01 0.00 0.00 0.00 272.51 446.79 277.46 4636.82 1062.89 1227.01 48 ER5c ExonRegion 0 54.31 38.95 521.02 56.25 23.77 30.35 47.66 72.15 39.79 138.94 1.15 0.00 0.00 7.26 0.00 0.00 0.00 185.92 356.96 210.76 3176.02 1177.10 1198.48 49 E5a_E6a KnownJunction 0 200.85 71.83 758.55 77.31 48.56 75.30 84.92 108.64 48.73 197.73 0.00 0.00 0.00 7.42 0.00 0.00 0.00 386.72 728.68 330.52 3942.32 1631.75 2292.68 50 ER6a ExonRegion 0 97.58 57.58 650.98 75.61 24.81 42.44 66.42 85.41 39.78 152.37 0.00 0.00 0.00 10.79 0.91 0.00 0.00 250.06 567.72 256.65 3139.05 1276.37 1665.50 51 E6_Da KnownBoundary 0 89.42 64.00 776.55 99.75 37.27 24.82 82.54 93.11 49.45 165.95 0.00 0.00 0.00 14.72 4.45 0.00 0.00 265.14 694.23 258.48 2820.07 1372.55 1716.40 52 ER6b ExonRegion 0 63.86 38.76 783.34 86.63 26.27 27.32 54.26 105.51 46.76 179.60 1.01 0.00 0.00 9.68 0.62 0.00 1.72 243.77 607.82 260.33 3330.57 1334.86 1304.53 53 E6_Db KnownBoundary 0 10.00 8.75 288.16 33.83 0.00 5.56 8.88 23.25 9.87 47.68 0.00 0.00 0.00 5.12 0.00 0.00 0.00 51.82 50.54 121.25 273.92 209.36 181.06 54 E6b_E6b KnownJunction 0 0.00 0.00 1.33 3.96 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 4.42 0.00 0.00 8.33 16.90 55 E6b_E6d KnownJunction 0 45.79 17.30 493.60 38.66 37.61 29.47 35.02 76.40 24.04 114.65 0.00 0.00 0.00 7.36 0.00 0.00 0.00 127.84 287.54 155.32 2997.01 904.97 997.38 56 ER6c ExonRegion 0 36.27 9.08 300.61 43.70 15.60 15.28 31.11 13.67 8.10 61.00 0.00 0.00 1.19 4.51 0.63 0.00 1.01 96.02 159.38 108.50 298.35 274.71 320.61 57 E6_Ab KnownBoundary 0 50.68 15.06 266.25 33.96 15.87 12.89 32.81 16.92 8.04 45.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.67 146.73 109.75 259.28 183.76 284.34 58 ER6d ExonRegion 0 45.48 20.34 238.55 41.67 12.26 10.24 24.89 12.18 12.71 56.44 0.00 0.00 0.00 4.02 0.64 0.00 0.00 83.87 130.88 108.79 294.25 302.08 343.84 59 E6_Ac KnownBoundary 0 44.08 21.71 285.21 36.33 11.80 2.16 22.66 9.82 6.63 43.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.06 106.17 100.73 303.70 195.33 202.23 60 E6_Dc NovelBoundary 0 24.67 9.80 120.01 31.66 4.16 0.00 24.02 7.23 8.51 31.83 0.00 0.00 0.00 2.47 0.00 0.00 0.00 57.29 133.18 64.62 194.17 141.57 162.19 61 E6c_E6d KnownJunction 0 0.00 0.00 29.57 3.50 4.33 0.00 0.00 0.00 1.24 5.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.96 4.14 6.52 14.46 13.84 33.55 62 ER6e ExonRegion 0 29.63 15.35 238.33 26.24 6.29 1.56 29.19 12.27 6.79 45.47 0.10 0.00 0.00 2.60 0.00 0.00 0.00 56.63 147.48 105.85 346.64 235.65 244.33 63 E6_Dd KnownBoundary 0 16.89 12.23 215.46 34.56 30.81 34.41 52.55 16.92 8.25 62.29 2.42 0.00 0.00 3.00 0.00 0.00 0.00 77.93 136.00 90.95 355.22 435.92 336.67 64 E6d_E6d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER6f ExonRegion 0 19.29 11.26 202.89 27.78 15.44 16.79 40.69 15.49 8.36 56.07 1.49 0.00 0.00 3.62 0.00 0.00 0.00 61.90 161.23 98.28 351.83 345.22 289.49 66 ER6g ExonRegion 0 33.30 13.45 387.60 71.64 22.48 22.56 40.13 19.53 10.66 86.02 1.18 0.00 0.00 4.30 0.00 0.00 0.00 139.05 180.00 110.49 397.69 449.63 416.52 67 E6_Ad KnownBoundary 0 56.82 14.67 314.83 63.10 11.88 5.51 35.95 16.31 11.92 85.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.96 144.47 85.39 342.18 316.09 376.88 68 ER6h ExonRegion 0 91.28 51.60 807.17 103.20 41.09 38.75 63.98 80.75 45.98 171.13 3.09 2.09 3.40 7.97 0.60 0.00 0.00 224.80 490.25 238.73 3394.16 1234.33 1325.30 69 E6_Ae NovelBoundary 0 86.68 42.16 437.86 49.98 37.35 46.34 48.05 37.87 20.60 79.91 4.63 0.00 0.00 12.01 0.00 0.00 0.00 161.46 276.06 163.12 2165.67 702.23 865.75 70 E6e_E6f KnownJunction 0 49.27 32.89 419.06 31.00 18.51 29.36 46.50 27.81 10.10 69.36 0.00 0.00 0.00 4.94 0.00 0.00 0.00 105.08 152.85 156.60 2017.46 601.68 822.99 71 ER6i ExonRegion 0 44.21 32.42 434.19 39.68 24.08 37.90 45.90 31.98 16.95 76.91 2.90 0.00 0.00 10.83 0.00 0.00 0.00 158.09 232.71 159.46 2283.90 675.64 888.01 72 ER6j ExonRegion 0 15.74 8.18 174.48 18.49 12.01 8.06 13.02 9.28 5.56 43.52 0.62 0.00 0.00 2.00 0.00 0.00 0.69 66.49 76.28 55.28 152.55 116.17 206.84 73 E6_Af KnownBoundary 0 35.04 9.08 171.90 23.61 23.94 13.17 17.40 8.79 2.37 63.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.70 84.52 51.77 153.89 125.71 164.67 74 ER6k ExonRegion 0 56.77 31.28 485.92 48.51 31.13 28.64 64.63 40.96 24.96 108.45 0.65 0.30 1.39 6.50 0.00 0.00 1.19 151.05 210.97 156.16 1990.01 708.13 855.97 75 E6f_E7a KnownJunction 0 66.97 44.33 582.15 53.77 22.75 36.97 43.81 46.09 23.12 112.04 0.00 6.15 0.00 7.83 0.00 0.00 0.00 209.88 232.38 149.76 1816.07 791.93 847.40 76 ER7a ExonRegion 0 101.62 42.18 777.12 76.38 30.04 24.53 44.55 73.98 39.61 149.48 0.60 0.84 0.00 8.19 1.54 0.00 1.03 225.19 283.11 193.19 2382.73 807.78 922.09 77 E7_Da NovelBoundary 0 13.48 0.00 103.16 13.62 0.00 4.77 10.07 4.93 4.86 22.08 2.68 0.00 0.00 0.00 0.00 0.00 0.00 41.37 30.49 26.33 109.28 60.07 86.39 78 E7a_E8a KnownJunction 0 215.15 43.02 1016.26 83.17 55.01 65.36 85.28 93.20 49.25 159.16 0.00 0.00 0.00 10.01 0.00 0.00 0.00 257.84 293.56 238.73 2268.03 801.73 1037.59 79 ER8a ExonRegion 0 215.74 32.08 951.56 91.87 44.73 51.53 76.98 105.02 41.26 176.12 0.00 0.00 0.00 8.44 0.00 0.00 0.00 266.28 360.84 207.67 2635.82 944.71 1032.46 80 E8_Da KnownBoundary 0 420.82 68.08 1110.72 118.70 55.77 54.91 104.44 126.38 53.65 203.96 0.00 0.00 0.00 4.83 0.00 0.00 0.00 274.30 423.35 248.96 3405.48 1233.18 1284.97 81 ER8b ExonRegion 0 183.48 51.07 926.59 95.12 60.06 45.96 58.67 90.45 40.74 153.11 0.74 0.74 0.00 6.95 1.09 0.00 0.00 234.14 416.37 202.95 2167.25 1023.29 1093.58 82 E8_Db KnownBoundary 0 64.16 71.96 1601.42 181.26 135.99 73.37 86.82 164.95 63.22 225.34 2.05 0.00 0.00 17.13 0.00 0.00 0.00 440.15 892.54 186.89 1953.52 1733.09 2223.45 83 ER8c ExonRegion 0 106.06 30.19 731.51 91.59 58.50 32.87 42.01 72.22 26.25 114.60 0.61 0.00 0.00 5.05 0.49 0.00 0.00 147.02 409.16 110.91 1504.45 932.62 1114.75 84 ER8d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 1.04 0.00