Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC130686.3 Gene 0 29.12 34.47 144.30 65.82 25.82 27.64 40.95 37.23 26.86 100.78 4.90 7.62 10.11 13.72 15.59 10.83 8.37 84.44 97.39 123.05 125.17 91.78 109.53 2 355468 Transcript 0 1.81 0.48 5.20 0.85 1.46 0.30 3.04 1.66 1.16 4.17 0.00 0.00 0.00 0.25 0.00 0.00 0.00 4.86 8.58 13.33 5.26 3.08 4.78 3 393928 Transcript 0 0.82 0.04 5.35 0.02 1.41 0.00 1.86 0.06 0.11 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.20 3.63 7.28 6.07 4.17 5.15 4 467164 Transcript 0 2.37 5.53 32.49 12.98 4.47 8.10 9.19 8.29 4.21 17.54 0.00 0.00 1.08 1.92 1.15 0.00 0.00 14.70 14.32 27.11 16.85 8.01 19.04 5 484247 Transcript 0 11.81 9.23 51.16 24.45 8.67 16.97 19.84 12.99 6.58 27.63 0.32 0.00 0.64 0.76 0.44 0.00 0.28 27.08 22.19 29.76 23.57 12.75 12.47 6 465097 Transcript 0 128.99 216.94 441.20 350.11 192.53 141.28 306.31 243.32 257.87 396.27 58.33 25.51 26.78 23.43 31.65 128.77 135.11 403.47 193.79 310.89 270.89 161.72 284.60 7 ER1a ExonRegion 0 0.90 0.86 10.86 0.42 1.71 0.39 4.78 0.55 1.17 4.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 10.87 24.37 35.45 13.58 4.99 14.35 8 E1_Da NovelBoundary 0 0.00 3.29 27.26 0.00 0.00 0.00 10.02 0.00 5.12 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.87 18.54 22.18 10.63 5.69 17.24 9 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.32 0.00 2.76 0.00 10 ER2a ExonRegion 0 0.82 0.04 5.35 0.02 1.41 0.00 1.86 0.06 0.11 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.20 3.63 7.28 6.07 4.17 5.15 11 E2_Ab KnownBoundary 0 3.78 0.00 14.16 0.00 4.33 0.00 3.80 0.00 3.18 6.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 9.32 18.15 21.68 8.94 16.05 12 ER2b ExonRegion 0 1.50 1.98 34.92 6.28 2.82 3.47 3.79 7.67 4.78 28.53 0.81 0.00 0.00 2.66 0.40 0.32 0.36 26.61 28.35 37.68 51.74 28.80 47.38 13 E2_Ac KnownBoundary 0 0.00 5.46 63.42 20.78 3.65 2.90 8.04 15.90 7.47 78.41 2.05 0.00 0.00 5.47 4.45 0.00 0.00 108.77 43.48 87.25 39.66 53.82 108.33 14 ER2c ExonRegion 0 5.01 13.43 62.57 20.69 6.05 8.90 14.29 12.33 10.31 59.91 2.04 0.00 0.00 5.13 2.40 0.00 1.12 42.08 42.61 83.01 111.65 51.81 48.28 15 E2a_E3a KnownJunction 0 14.97 33.94 149.67 45.98 3.48 20.27 38.42 19.92 20.49 107.85 4.95 0.00 0.00 9.77 0.00 0.00 4.77 110.89 65.79 111.92 139.25 74.09 58.56 16 ER3a ExonRegion 0 16.93 20.31 163.48 50.93 18.19 24.29 32.87 32.82 27.11 120.84 1.48 0.00 0.00 11.25 2.84 0.00 1.73 109.50 113.38 170.94 176.73 107.57 116.01 17 E3a_E4a KnownJunction 0 15.04 37.89 255.52 97.39 22.58 53.04 42.71 41.07 41.61 204.96 2.58 0.00 0.00 18.84 4.45 0.00 0.00 226.75 168.19 217.00 205.90 143.29 220.07 18 ER4a ExonRegion 0 16.43 28.58 269.47 116.20 22.65 46.30 33.72 59.89 43.59 220.67 4.01 1.06 0.98 16.11 4.47 0.88 0.98 201.52 211.40 239.82 268.10 182.62 168.07 19 E4_Da KnownBoundary 0 3.70 2.83 27.67 15.12 6.71 16.87 8.26 10.84 1.24 14.08 0.00 0.00 0.00 2.24 0.00 0.00 0.00 11.28 12.52 46.53 30.15 11.14 34.49 20 E4a_E5a KnownJunction 0 23.56 44.66 364.15 197.38 29.37 40.94 38.64 84.12 59.35 273.13 9.53 0.00 0.00 19.37 0.00 0.00 0.00 259.42 217.14 155.96 253.66 159.39 181.06 21 E4a_E6a NovelJunction 0 0.00 0.00 18.36 0.00 0.00 2.67 5.87 1.60 0.00 4.30 2.68 0.00 0.00 2.30 0.00 0.00 0.00 17.29 8.75 19.62 5.68 4.65 7.17 22 E4a_E7b NovelJunction 0 0.00 0.00 16.47 0.00 0.00 0.00 4.50 0.00 1.62 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 6.52 0.00 6.25 0.00 23 ER4b ExonRegion 0 2.37 5.53 32.49 12.98 4.47 8.10 9.19 8.29 4.21 17.54 0.00 0.00 1.08 1.92 1.15 0.00 0.00 14.70 14.32 27.11 16.85 8.01 19.04 24 E4_Db NovelBoundary 0 3.78 9.74 47.96 17.71 0.00 15.45 5.92 14.99 4.31 16.39 0.00 0.00 0.00 0.00 0.00 0.00 4.49 19.81 12.52 18.47 11.00 5.39 19.29 25 E4b_E5a NovelJunction 0 0.00 3.29 15.55 8.99 4.24 0.00 2.21 0.00 0.00 22.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.62 0.00 0.00 11.86 3.06 16.39 26 E5_Aa NovelBoundary 0 0.00 11.97 94.97 37.52 0.00 13.91 27.29 4.48 9.55 16.04 0.00 0.00 0.00 2.47 0.00 0.00 0.00 28.93 26.17 35.09 6.18 2.76 8.71 27 ER5a ExonRegion 0 24.96 53.71 310.48 152.55 43.66 50.68 80.33 67.36 46.71 202.38 4.97 0.57 2.07 18.94 4.77 1.18 1.31 217.92 246.19 243.33 269.42 208.27 238.60 28 E5_Da NovelBoundary 0 0.00 9.14 53.90 17.68 15.53 10.45 11.48 7.15 5.96 15.02 0.00 0.00 0.00 2.47 0.00 0.00 0.00 35.40 16.94 39.63 14.09 0.00 3.24 29 E5a_E6a KnownJunction 0 47.34 39.20 289.88 190.49 58.06 40.83 55.87 82.31 50.17 187.15 2.05 6.30 5.84 7.00 0.00 0.00 0.00 172.65 140.71 197.06 192.44 114.87 211.27 30 E5a_E7b NovelJunction 0 3.78 0.00 7.24 2.00 0.00 16.13 6.76 0.00 1.45 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 9.60 2.43 0.00 3.12 4.18 31 E6_Aa NovelBoundary 0 7.19 14.80 73.77 56.70 3.65 24.13 37.63 11.91 12.21 67.18 0.00 0.00 0.00 10.07 0.00 0.00 0.00 51.32 68.14 23.20 32.43 31.11 23.05 32 ER6a ExonRegion 1 39.50 58.24 279.73 134.39 27.47 44.61 69.63 42.79 39.16 181.93 2.59 1.99 3.28 18.52 0.79 1.04 1.15 158.41 156.00 217.12 247.80 168.28 182.59 33 E6_Da NovelBoundary 0 0.00 6.25 27.67 18.08 0.00 0.00 10.02 6.28 4.72 17.19 0.00 0.00 0.00 0.00 6.30 0.00 0.00 26.45 21.37 11.70 8.96 20.21 4.35 34 E6a_E7b KnownJunction 0 20.74 32.63 267.91 145.94 40.92 58.21 86.34 41.61 36.34 139.79 0.00 0.00 0.00 18.60 13.23 0.00 0.00 82.87 140.43 162.92 189.29 153.02 154.34 35 ER7a ExonRegion 0 11.81 9.23 51.16 24.45 8.67 16.97 19.84 12.99 6.58 27.63 0.32 0.00 0.64 0.76 0.44 0.00 0.28 27.08 22.19 29.76 23.57 12.75 12.47 36 E7_Ab KnownBoundary 0 11.04 16.38 31.78 15.12 4.33 18.74 8.83 14.25 6.28 25.09 0.00 0.00 0.00 3.00 0.00 0.00 0.00 21.14 13.18 47.23 15.20 8.14 8.71 37 E7_Ac KnownBoundary 0 15.85 41.44 283.58 148.27 16.04 38.27 44.25 59.35 37.38 162.43 2.68 0.00 0.00 9.30 0.00 0.00 4.77 131.24 126.50 278.62 138.07 127.55 173.20 38 ER7b ExonRegion 0 19.39 33.39 247.13 131.06 26.41 47.97 58.38 46.28 33.51 154.35 1.81 0.00 0.00 16.66 10.01 0.00 3.30 126.00 124.85 240.42 168.19 139.60 162.56 39 ER7c ExonRegion 0 22.55 39.03 233.69 135.50 20.53 27.97 38.93 39.92 30.52 158.01 0.82 0.00 0.45 24.64 6.03 0.00 1.27 138.58 133.72 243.17 195.16 144.68 218.22 40 E7a_E8a KnownJunction 0 36.01 47.95 254.69 133.85 18.59 8.06 46.99 33.39 29.75 182.37 0.00 0.00 0.00 21.84 4.45 0.00 0.00 126.56 182.12 253.18 165.01 113.28 205.13 41 E7a_E9a NovelJunction 0 7.56 24.27 1.77 9.79 7.64 2.38 8.04 2.14 3.33 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.05 9.60 28.89 5.44 2.76 0.00 42 E8_Aa NovelBoundary 0 13.34 0.00 22.35 20.01 4.07 10.96 4.11 13.02 3.56 9.43 0.00 0.00 0.00 2.12 0.00 0.00 0.00 8.25 9.22 22.05 5.31 2.45 4.35 43 ER8a ExonRegion 0 44.13 43.84 253.66 91.82 28.46 25.51 38.32 33.34 26.97 161.10 5.45 0.00 2.56 16.63 6.00 0.00 3.48 121.01 149.08 197.64 217.76 138.66 175.71 44 E8_Da NovelBoundary 0 0.00 9.01 19.48 20.71 0.00 2.78 11.53 9.04 6.22 13.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.84 30.68 14.25 17.42 3.06 11.27 45 E8a_E9a KnownJunction 0 86.09 127.02 289.37 139.01 48.56 36.40 49.99 48.43 36.14 155.77 0.00 0.00 0.00 7.30 12.36 0.00 0.00 153.54 114.36 250.68 198.37 141.57 297.92 46 E9_Aa NovelBoundary 0 9.33 11.77 21.94 12.95 7.72 10.62 25.84 6.45 1.33 13.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.84 15.25 6.39 5.31 2.88 7.94 47 ER9a ExonRegion 0 120.00 142.79 304.58 143.75 96.36 86.75 141.55 81.69 54.16 196.26 25.47 52.85 61.46 48.30 80.36 92.85 62.69 177.47 237.30 312.20 261.31 247.40 317.52 48 E9_Da KnownBoundary 0 112.32 69.07 477.13 211.49 100.59 34.41 127.45 126.30 71.96 259.67 19.06 0.00 14.12 31.20 30.66 37.94 61.15 212.74 331.21 303.67 317.16 255.89 257.71 49 E9a_E9b KnownJunction 0 128.99 216.94 441.20 350.11 192.53 141.28 306.31 243.32 257.87 396.27 58.33 25.51 26.78 23.43 31.65 128.77 135.11 403.47 193.79 310.89 270.89 161.72 284.60 50 ER9b ExonRegion 0 79.67 87.13 301.21 164.47 75.71 68.40 104.34 113.91 77.98 223.14 12.59 24.16 30.05 39.45 59.12 23.28 18.18 172.32 199.76 217.95 240.65 184.99 244.44 51 E9_Ab KnownBoundary 0 1325.27 1429.55 637.62 474.47 1231.92 803.86 1981.23 491.16 398.32 600.34 522.61 528.77 550.45 515.34 584.22 1043.66 1292.94 706.78 1097.91 1497.84 1063.31 541.12 1189.02 52 ER9c ExonRegion 0 68.06 67.29 214.38 119.89 53.59 38.17 77.51 113.09 95.98 174.52 21.79 30.68 54.46 34.69 53.80 42.50 41.92 145.13 118.32 156.06 146.22 93.35 157.92 53 E9_Db KnownBoundary 1 4743.95 5804.43 7583.23 7764.08 4934.64 4504.11 6691.27 7682.49 7608.98 6413.40 2392.76 823.02 1193.59 787.57 1931.89 6266.65 4796.16 9403.45 5816.26 5906.40 3121.18 2800.21 6174.06 54 ER9d ExonRegion 0 31.31 31.38 151.97 68.04 25.02 18.49 33.50 39.88 31.07 105.97 3.49 7.85 11.29 13.41 21.80 7.54 5.53 54.30 97.08 104.28 110.44 103.75 90.44 55 ER9e ExonRegion 0 4.54 0.58 4.73 2.14 2.68 0.52 4.35 4.44 2.29 8.52 0.00 0.00 0.00 0.46 0.00 0.00 0.00 3.70 1.37 1.22 2.20 1.49 0.00