Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STAT5A Gene 0 66.43 2.77 41.92 23.20 30.10 22.71 14.69 32.06 45.92 18.36 313.90 43.28 84.47 161.19 75.31 111.24 201.84 3.64 8.26 5.80 47.84 42.12 43.81 2 345506 Transcript 0 3.58 0.31 0.97 0.26 2.44 0.16 1.56 0.64 2.76 0.09 18.37 2.27 1.84 6.34 3.76 6.24 9.36 0.16 0.03 0.00 3.49 2.06 4.04 3 469124 Transcript 0 4.87 0.66 1.03 1.44 1.74 0.06 1.46 2.06 2.79 1.07 5.70 2.43 1.97 3.60 3.88 5.34 6.43 0.00 0.00 1.46 1.33 0.58 10.79 4 452307 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 444283 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 478897 Transcript 0 4.43 0.00 0.86 0.12 0.00 0.38 0.00 2.72 5.28 0.00 5.35 0.60 1.25 6.19 2.22 7.79 24.92 0.89 0.00 0.00 1.48 0.67 1.88 7 479417 Transcript 0 5.95 0.61 6.51 2.68 4.14 2.58 1.50 2.16 5.61 1.17 31.26 2.64 9.09 16.83 7.75 16.94 18.11 0.02 3.40 0.66 6.01 3.68 3.96 8 468096 Transcript 0 7.23 0.08 3.25 1.17 5.73 5.33 2.38 1.57 1.17 1.55 9.09 1.96 12.86 3.44 4.49 4.81 13.64 0.48 0.05 0.52 2.10 2.16 10.71 9 ER1a ExonRegion 0 1.21 0.00 0.00 0.00 1.59 0.00 1.52 0.00 0.60 0.00 10.12 2.04 0.00 0.95 3.52 0.73 1.97 0.00 0.00 0.00 5.05 0.70 1.62 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 4.30 0.00 4.36 0.00 0.00 0.00 0.00 0.00 3.12 8.71 11 ER2a ExonRegion 0 1.24 0.00 0.43 0.24 1.73 0.62 0.47 0.47 1.68 0.38 39.39 3.57 3.60 13.96 6.88 10.96 26.88 0.65 0.14 0.00 8.01 4.40 5.85 12 E2_Ab KnownBoundary 0 3.33 3.09 0.00 0.00 4.33 0.00 0.00 5.79 2.55 1.67 28.95 5.70 0.00 14.24 21.14 8.46 4.30 0.00 0.00 0.00 8.90 8.51 0.00 13 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Ad KnownBoundary 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 1.71 1.67 26.53 0.00 0.00 4.94 4.45 0.00 24.50 0.00 0.00 0.00 5.31 0.00 0.00 15 ER2b ExonRegion 0 0.42 0.00 1.10 0.00 2.68 5.68 0.00 2.94 3.09 2.29 58.57 4.33 0.00 21.60 15.38 15.75 37.63 0.00 3.19 0.00 10.58 6.46 1.47 16 ER2c ExonRegion 1 4.23 1.02 1.23 0.00 2.68 8.25 0.00 1.73 2.47 2.29 68.62 4.33 0.00 19.49 17.41 26.75 41.26 0.00 3.19 0.00 15.43 6.25 0.00 17 ER2d ExonRegion 1 20.88 1.05 7.33 2.78 9.52 11.72 5.57 2.05 10.07 3.41 135.56 3.70 2.76 58.50 44.30 48.63 86.54 2.04 2.33 1.12 22.45 8.18 13.38 18 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E3c KnownJunction 0 0.00 0.00 10.94 1.56 4.33 2.27 0.00 4.27 16.29 2.74 75.49 12.60 6.49 38.91 26.70 18.71 54.60 1.74 0.00 0.00 14.64 4.53 4.27 20 ER3a ExonRegion 0 4.43 0.00 0.86 0.12 0.00 0.38 0.00 2.72 5.28 0.00 5.35 0.60 1.25 6.19 2.22 7.79 24.92 0.89 0.00 0.00 1.48 0.67 1.88 21 E3_Ab KnownBoundary 0 3.63 0.00 1.83 0.00 0.00 2.84 0.00 0.00 4.46 0.00 11.21 6.30 0.00 16.72 0.00 7.01 30.95 0.00 0.00 0.00 0.00 0.00 3.67 22 E3_Ac KnownBoundary 0 3.78 0.00 0.00 2.06 0.00 0.00 0.00 7.43 4.86 0.00 20.16 0.00 0.00 2.47 0.00 4.19 12.72 0.00 0.00 0.00 2.90 2.39 16.30 23 ER3b ExonRegion 0 3.64 0.00 1.53 1.49 0.08 1.09 0.00 5.29 3.40 0.11 18.60 2.98 0.29 13.15 3.72 5.67 27.23 0.06 0.00 0.00 2.69 0.13 11.29 24 ER3c ExonRegion 0 12.34 0.00 11.65 6.54 7.52 5.60 1.95 10.67 28.71 7.29 214.81 15.39 27.22 96.56 50.61 68.60 117.84 1.74 2.07 2.48 34.05 22.01 25.87 25 E3a_E4a KnownJunction 0 16.23 0.00 23.59 18.75 8.32 5.79 3.97 12.45 44.96 10.80 352.04 33.76 46.43 142.03 93.21 167.22 163.72 2.57 4.14 2.43 52.20 42.07 68.21 26 ER4a ExonRegion 0 24.18 2.84 14.61 13.89 18.68 17.32 8.05 24.69 64.52 12.52 425.63 40.15 59.98 201.54 84.51 154.40 245.21 2.86 3.39 6.04 64.44 50.93 59.56 27 E4_Da KnownBoundary 0 3.78 0.00 3.19 0.00 0.00 0.00 2.25 2.46 2.84 1.67 10.48 0.00 6.82 6.95 4.45 4.10 0.00 0.00 0.00 0.00 2.35 6.25 4.01 28 E4a_E5a KnownJunction 0 39.86 6.45 9.46 13.45 28.78 37.88 13.65 33.56 70.49 17.78 454.85 30.01 93.18 273.30 114.59 125.01 321.83 10.24 9.41 0.00 79.38 67.60 76.23 29 E4a_E6a NovelJunction 0 0.00 0.00 1.57 1.86 0.00 0.00 1.63 7.02 8.62 0.00 50.96 5.70 0.00 19.25 15.82 14.61 20.57 0.00 0.00 0.00 8.59 8.76 3.93 30 ER4b ExonRegion 0 4.87 0.66 1.03 1.44 1.74 0.06 1.46 2.06 2.79 1.07 5.70 2.43 1.97 3.60 3.88 5.34 6.43 0.00 0.00 1.46 1.33 0.58 10.79 31 ER5a ExonRegion 0 28.09 1.11 15.54 14.21 14.47 20.34 2.31 29.31 64.56 12.86 402.95 28.08 109.72 213.94 77.59 142.57 260.22 5.77 5.79 4.71 71.42 42.93 57.49 32 E5_Da NovelBoundary 0 76.38 10.52 34.00 29.70 34.21 54.63 35.86 40.13 78.62 12.76 532.08 66.77 136.52 191.01 51.80 222.42 304.81 9.08 23.81 71.52 104.84 80.40 86.90 33 E5b_E6a KnownJunction 1 37.41 0.00 24.57 16.15 7.05 18.68 6.32 34.26 101.94 18.19 479.33 18.31 54.70 224.97 108.66 159.19 274.80 2.57 0.00 9.01 52.39 36.13 50.79 34 ER5b ExonRegion 1 38.45 0.17 24.61 14.37 9.37 14.90 3.31 33.78 81.21 13.91 492.24 25.07 89.50 211.07 88.73 154.30 268.06 1.85 3.72 8.60 69.14 38.02 41.60 35 ER6a ExonRegion 0 46.18 1.26 26.32 19.47 15.89 19.24 10.21 41.76 82.36 17.36 585.01 45.62 100.10 271.65 78.28 168.77 322.87 6.61 5.28 9.84 78.48 55.95 77.43 36 E6a_E7a KnownJunction 0 73.20 2.57 47.60 26.84 34.63 24.30 6.45 39.68 81.86 13.73 546.61 64.52 186.19 192.07 52.04 253.78 345.11 6.30 4.52 3.20 88.47 51.86 97.57 37 ER7a ExonRegion 0 38.34 0.96 18.46 15.44 7.17 16.62 4.68 21.04 50.96 9.28 262.00 27.27 56.60 143.74 41.50 92.73 145.06 5.29 2.97 5.10 45.27 32.03 38.29 38 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER8a ExonRegion 0 19.95 1.79 7.63 5.76 4.45 15.41 8.00 6.72 16.63 3.06 52.15 13.39 25.12 53.78 24.64 39.91 50.99 3.00 1.07 3.77 12.35 20.67 17.33 40 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER9a ExonRegion 0 23.91 1.73 24.65 19.76 9.55 13.39 9.47 32.94 45.79 18.92 288.01 30.78 73.33 138.31 56.91 120.14 198.65 3.89 12.74 3.89 47.24 48.70 37.89 42 E9a_E10a KnownJunction 0 54.31 3.35 47.34 34.76 35.65 53.38 27.47 47.89 83.65 24.87 591.15 44.86 194.47 338.75 121.64 202.77 422.44 9.04 8.38 11.89 80.25 81.01 77.77 43 ER10a ExonRegion 0 58.22 3.32 51.43 35.31 28.96 31.63 14.96 53.23 75.76 28.84 585.80 61.48 165.40 278.04 102.88 215.00 407.51 9.05 17.71 8.03 77.35 74.87 71.02 44 E10_Da NovelBoundary 0 3.56 0.00 11.09 5.89 8.49 9.54 8.35 11.54 7.64 4.03 52.80 24.31 47.07 15.19 32.88 22.64 29.36 0.00 4.80 3.26 8.83 0.00 10.59 45 E10a_E11b KnownJunction 0 38.08 9.41 33.17 33.76 47.96 29.41 15.77 32.08 60.62 22.56 454.96 51.47 74.51 304.55 96.67 173.03 325.67 2.32 4.61 11.57 49.73 68.83 57.53 46 I10_AR2 ActiveIntronRegion 0 15.13 0.00 7.14 1.92 2.89 2.23 2.50 4.17 5.46 2.77 29.22 6.84 6.89 18.05 9.05 16.04 31.62 0.74 3.87 0.57 2.08 6.47 10.30 47 E11_Aa NovelBoundary 0 40.30 0.00 13.25 1.27 12.39 2.27 3.80 9.08 11.86 5.75 34.11 11.70 13.31 15.83 4.45 11.54 24.68 2.57 4.24 0.00 0.00 0.00 0.00 48 ER11a ExonRegion 0 5.95 0.61 6.51 2.68 4.14 2.58 1.50 2.16 5.61 1.17 31.26 2.64 9.09 16.83 7.75 16.94 18.11 0.02 3.40 0.66 6.01 3.68 3.96 49 E11_Ab KnownBoundary 0 10.67 6.71 1.18 0.00 12.05 2.56 4.20 2.55 2.92 0.00 29.53 0.00 0.00 16.60 15.82 0.00 18.33 0.00 4.42 0.00 2.66 0.00 0.00 50 ER11b ExonRegion 0 42.38 7.06 49.96 29.95 42.54 26.71 20.07 39.56 75.24 24.92 514.82 82.11 155.90 264.40 100.48 186.83 338.13 4.29 14.13 8.12 79.64 61.50 47.32 51 E11a_E12a KnownJunction 0 57.79 6.45 62.18 37.16 72.58 36.97 27.47 31.26 75.17 22.56 635.95 71.12 206.16 310.67 129.18 170.30 416.18 4.44 12.61 3.26 77.90 40.60 31.24 52 ER12a ExonRegion 0 54.98 3.42 55.98 29.81 27.39 35.80 16.80 30.33 68.52 30.10 553.26 89.23 162.17 277.39 105.44 161.22 353.03 6.20 12.04 10.00 86.12 66.55 62.65 53 E12a_E13a KnownJunction 0 78.46 9.01 73.06 39.36 16.55 29.70 6.23 36.31 82.90 28.21 535.35 70.67 148.20 269.53 111.50 184.99 336.42 6.92 12.14 9.01 85.62 80.46 47.04 54 ER13a ExonRegion 0 51.07 6.82 50.85 29.51 24.94 32.75 12.27 26.11 61.68 30.24 526.04 57.87 108.63 215.45 99.80 137.93 330.59 5.62 16.13 7.23 69.83 55.16 32.02 55 E13a_E14b KnownJunction 0 101.80 5.33 63.36 29.77 62.39 36.12 21.86 40.09 76.42 28.96 553.77 80.28 108.43 231.80 79.49 138.25 304.72 1.78 8.56 12.53 66.29 73.05 59.33 56 I13_SR1 SilentIntronRegion 0 14.43 0.00 2.24 0.84 5.87 1.12 2.19 4.14 1.53 1.86 6.53 2.28 4.44 4.66 1.53 5.05 12.46 0.00 1.75 0.00 2.68 1.23 6.50 57 ER14a ExonRegion 0 7.23 0.08 3.25 1.17 5.73 5.33 2.38 1.57 1.17 1.55 9.09 1.96 12.86 3.44 4.49 4.81 13.64 0.48 0.05 0.52 2.10 2.16 10.71 58 E14_Ab KnownBoundary 0 3.41 0.00 1.66 1.50 0.00 11.58 0.00 2.09 1.45 2.82 7.84 0.00 22.08 2.47 5.07 3.16 4.77 0.00 0.00 0.00 5.44 0.00 11.87 59 ER14b ExonRegion 0 82.30 5.60 72.60 41.80 40.14 37.41 25.17 47.58 73.29 38.43 474.22 58.27 113.89 256.86 114.89 140.53 319.18 17.30 6.33 15.29 64.30 72.33 73.24 60 E14_Da KnownBoundary 0 187.96 150.37 292.80 242.56 107.13 270.07 181.69 161.75 256.10 298.95 705.44 119.59 357.93 578.85 254.65 357.94 654.70 145.96 59.95 147.01 151.97 268.26 181.31 61 ER14c ExonRegion 0 67.34 5.28 80.47 43.53 38.23 34.63 19.55 60.71 70.07 36.94 478.83 80.22 161.67 234.07 93.54 154.38 299.21 7.28 14.61 8.84 64.89 64.97 59.99 62 E14b_E15a KnownJunction 0 71.27 5.99 80.25 42.49 47.28 34.13 29.85 62.80 71.06 38.73 473.23 109.84 141.71 245.10 121.39 146.80 330.90 9.87 4.14 5.69 70.92 37.11 63.25 63 ER15a ExonRegion 0 92.21 4.11 90.59 46.32 43.49 44.47 22.09 74.41 76.54 40.47 579.30 94.88 164.64 270.46 129.76 173.45 397.01 5.35 19.08 8.67 98.61 91.08 86.06 64 E15a_E16a KnownJunction 0 116.91 8.95 128.82 67.79 53.57 44.07 20.54 96.40 100.69 37.90 646.37 140.00 231.32 271.82 128.93 238.66 447.31 10.69 23.81 11.25 112.00 113.65 137.35 65 ER16a ExonRegion 0 123.19 5.51 99.07 56.81 51.51 41.87 17.97 72.45 95.34 40.26 656.51 116.40 221.08 324.91 142.43 262.82 445.39 6.28 16.88 9.58 103.88 88.97 103.68 66 E16a_E17a KnownJunction 1 191.37 6.71 82.40 61.03 107.98 48.95 21.33 72.58 72.60 44.21 654.85 136.84 281.96 242.63 50.44 286.59 493.59 1.74 23.44 18.02 110.03 134.90 97.66 67 ER17a ExonRegion 0 92.39 5.32 86.54 50.16 49.79 39.18 26.08 76.54 77.35 38.48 552.59 92.31 252.09 322.48 143.33 218.78 424.95 6.22 17.40 10.97 82.50 87.84 81.94 68 E17_Da NovelBoundary 0 14.08 0.00 7.86 0.00 3.57 0.00 0.00 2.38 1.13 0.00 12.58 6.30 0.00 0.00 0.00 0.00 4.49 2.28 0.00 3.26 5.75 0.00 18.01 69 E17a_E18a KnownJunction 0 114.02 0.00 50.47 35.96 59.08 45.54 28.35 43.25 69.47 25.52 570.57 101.43 173.69 219.61 110.14 180.12 479.66 10.20 0.00 13.36 57.51 44.27 73.16 70 E17a_E20a NovelJunction 0 3.56 0.00 1.69 0.00 0.00 5.62 0.00 0.00 1.79 0.00 6.79 5.40 0.00 4.71 6.30 8.72 22.35 0.00 0.00 0.00 8.77 0.00 0.00 71 I17_SR1 SilentIntronRegion 0 4.87 0.00 1.91 2.42 1.32 1.17 3.64 2.29 2.61 2.79 13.21 1.80 1.21 5.08 4.15 6.66 7.75 0.00 0.00 2.28 6.59 1.43 14.45 72 ER18a ExonRegion 0 85.39 1.64 64.03 51.00 48.63 44.26 32.34 63.82 68.93 27.02 486.83 120.81 261.56 303.46 126.71 213.25 345.45 11.09 4.23 14.24 61.32 78.85 90.92 73 E18a_E19a KnownJunction 1 105.72 2.63 86.69 68.96 69.69 55.65 29.50 97.22 65.80 34.81 438.74 135.34 269.95 372.07 189.75 269.93 227.40 8.54 8.56 5.94 67.96 87.75 114.30 74 ER19a ExonRegion 0 99.26 2.30 86.07 39.02 51.76 40.85 16.65 64.27 66.81 30.25 558.66 91.00 249.27 302.61 136.49 216.14 370.04 4.28 20.41 9.65 84.62 53.61 71.65 75 E19a_E20a KnownJunction 0 102.17 13.09 53.16 23.57 39.22 23.45 8.39 38.28 50.87 16.92 447.64 55.22 189.11 231.80 93.95 130.65 307.71 6.01 0.00 9.27 36.88 41.27 59.16 76 I19 Intron 0 16.74 0.37 6.47 3.32 10.95 6.67 4.21 4.21 5.19 2.95 25.13 2.94 7.05 10.71 5.28 6.21 13.20 0.42 2.03 0.58 5.01 6.82 8.54 77 I19_AR1 ActiveIntronRegion 0 15.88 0.80 7.22 3.21 8.46 7.25 7.85 4.07 5.82 4.05 22.91 1.41 3.71 7.48 0.00 4.70 9.14 0.73 2.52 0.00 2.61 5.75 8.13 78 I19_SR1 SilentIntronRegion 0 17.07 0.24 6.28 3.37 11.74 6.52 3.14 4.28 5.02 2.64 25.91 3.41 8.08 11.73 6.88 6.70 14.49 0.33 1.89 0.76 5.75 7.17 8.71 79 E20_Aa NovelBoundary 0 62.16 0.00 13.33 7.42 7.98 5.00 3.62 11.05 11.43 5.00 59.12 0.00 0.00 14.54 24.23 8.72 8.32 0.00 0.00 0.00 5.81 2.63 7.34 80 ER20a ExonRegion 0 93.38 7.30 69.13 27.34 37.46 26.43 15.50 46.67 63.79 22.53 447.75 56.03 177.12 248.20 98.47 153.15 297.27 7.50 2.06 6.88 53.80 40.44 58.91 81 ER20b ExonRegion 0 139.01 4.36 68.31 34.18 59.35 34.25 27.96 43.78 55.58 25.43 352.60 53.73 83.90 190.62 109.47 127.36 217.04 2.95 11.47 7.52 54.95 52.16 52.32 82 ER20c ExonRegion 0 11.85 1.22 3.43 0.82 6.42 0.00 4.24 2.07 5.19 0.00 23.97 3.46 3.75 6.17 4.64 8.92 8.58 0.00 0.00 0.00 0.88 0.00 0.00 83 IG26_AR1 ActiveIntergenicRegion 0 4.50 0.96 0.43 1.44 2.19 1.30 0.65 1.22 2.89 1.72 1.83 1.86 1.82 1.33 2.34 0.00 0.00 0.65 1.50 1.67 5.45 1.58 12.03