Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NME1-NME2 Gene 0 8.70 9.28 17.86 11.43 4.95 4.30 9.03 6.25 2.42 7.58 5.00 1.03 0.63 3.39 8.32 3.54 4.21 11.43 5.63 13.29 8.42 5.14 6.52 2 376392 Transcript 0 8.33 4.14 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 393198 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 393199 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 393183 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 24.99 12.42 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E6a NovelJunction 0 17.34 18.22 15.29 2.96 0.00 2.38 0.00 0.00 0.00 5.40 2.16 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 2.68 0.00 0.00 0.00 10 ER1b ExonRegion 0 34.43 32.07 0.99 0.00 0.00 2.19 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2b ExonRegion 0 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 30.05 29.69 2.21 0.00 0.00 1.83 4.24 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3b ExonRegion 0 10.06 8.67 5.81 1.20 1.09 1.34 6.60 0.65 0.00 0.26 0.00 0.00 0.00 0.96 0.32 0.02 0.00 1.45 0.00 0.20 0.00 0.00 0.12 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 3.86 9.19 27.79 18.00 6.43 5.63 15.43 8.73 1.26 6.62 5.59 0.00 0.00 5.76 18.60 5.97 3.33 7.30 3.75 29.72 9.59 9.80 16.38 19 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 14.57 26.27 69.22 44.48 15.06 11.10 21.66 23.88 11.62 28.24 23.04 3.52 3.49 11.77 30.91 13.15 18.93 42.42 27.32 45.77 38.38 19.56 20.95 21 E5a_E6a KnownJunction 0 26.75 49.53 106.29 69.16 47.28 20.56 67.79 39.68 9.61 50.88 40.59 5.85 0.00 17.25 49.94 19.57 33.01 53.68 42.73 86.10 62.89 19.29 28.08 22 I5 Intron 0 3.98 16.81 36.44 14.31 16.33 18.09 14.24 20.44 11.32 10.19 6.26 7.43 1.63 5.42 5.68 5.44 4.03 16.14 7.48 27.48 4.03 3.43 3.86 23 I5_SR2 SilentIntronRegion 0 4.14 17.52 37.98 14.91 17.02 18.85 14.84 21.31 11.80 10.62 6.53 7.74 1.70 5.64 5.82 5.67 4.20 16.82 7.80 28.64 4.20 3.57 4.02 24 Ix_SR1 SilentIntronRegion 0 0.06 9.48 14.53 11.56 3.66 9.17 7.81 6.04 15.57 6.25 4.17 2.56 0.26 2.58 5.72 4.06 3.02 12.08 3.45 19.93 5.90 2.73 3.10 25 Ix Intron 0 1.88 5.73 35.46 16.26 6.35 7.61 6.87 13.75 14.46 8.62 4.88 4.23 1.84 5.65 6.33 3.97 2.94 21.25 7.08 26.81 3.27 3.09 5.22 26 Ix_AR1 ActiveIntronRegion 0 2.25 8.50 54.70 18.49 8.40 9.71 8.55 23.10 18.48 12.22 4.79 6.62 3.49 7.44 8.96 4.34 3.92 26.10 10.48 38.24 3.92 3.73 7.84 27 ER6a ExonRegion 0 16.92 17.27 55.97 37.70 10.21 7.08 16.13 19.48 9.38 27.48 19.17 3.40 0.72 9.03 26.60 10.22 16.81 34.65 15.36 47.81 31.89 14.15 20.01 28 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER7a ExonRegion 0 14.36 4.86 28.72 21.41 11.41 8.43 14.39 14.29 3.37 17.30 5.34 2.46 2.94 9.04 14.05 9.15 5.44 35.80 14.90 19.40 7.52 12.99 14.05 30 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix_AR1 ActiveIntronRegion 0 4.02 5.68 14.45 8.88 17.22 18.86 6.28 2.57 4.97 5.85 18.59 9.21 5.89 35.94 27.30 20.20 14.30 3.51 9.15 12.38 0.00 12.18 15.81 32 Ix_AR3 ActiveIntronRegion 0 4.79 28.90 26.25 3.37 7.75 16.79 7.39 13.37 4.49 13.46 23.50 12.99 11.11 33.94 21.22 10.48 11.47 5.74 0.00 17.92 1.51 16.67 12.67 33 Ix_AR4 ActiveIntronRegion 0 8.20 34.95 24.05 2.73 8.03 11.00 4.30 10.48 4.94 11.47 21.75 15.42 17.59 25.38 21.03 17.09 13.20 7.39 0.00 21.81 0.00 13.02 10.28 34 Ix_AR5 ActiveIntronRegion 0 14.55 35.08 18.07 0.85 4.01 6.65 4.96 10.37 2.47 10.32 21.75 12.99 28.14 26.80 13.42 23.78 15.27 6.93 0.00 17.02 0.00 11.98 11.01 35 Ix_AR6 ActiveIntronRegion 0 14.82 28.29 15.15 0.00 2.43 4.50 4.93 8.64 2.47 8.34 21.09 15.74 25.58 21.56 16.09 28.91 14.40 4.03 0.00 15.67 0.00 7.01 6.14 36 Ix_AR7 ActiveIntronRegion 0 20.82 15.65 34.95 17.59 13.45 16.86 14.44 14.05 11.41 9.69 13.85 14.02 10.71 29.58 23.81 20.65 12.35 9.23 9.20 25.93 6.36 12.70 10.99 37 ER8a ExonRegion 0 8.22 13.66 2.29 0.83 10.16 12.11 23.81 0.83 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.32 0.00 2.76 0.00 0.62 0.00 0.00 0.00 38 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 Ix Intron 0 15.31 14.71 20.64 13.48 13.60 8.66 15.20 11.71 6.28 6.64 13.29 16.22 13.29 15.80 13.98 11.37 11.25 5.78 8.57 15.64 2.37 6.35 8.08 40 Ix_SR3 SilentIntronRegion 0 18.10 17.08 24.65 16.60 15.65 9.35 17.47 14.68 7.46 7.82 15.07 19.85 16.10 17.93 16.15 10.92 13.12 6.21 10.03 18.19 2.81 7.34 8.37 41 ER9a ExonRegion 0 2.65 2.22 1.10 0.00 0.03 0.16 0.21 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 42 ER9b ExonRegion 0 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER9c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00