Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPATA20 Gene 0 82.19 49.52 237.37 198.61 32.93 73.80 34.74 78.66 183.18 65.88 158.61 13.92 47.15 108.25 101.24 70.94 81.14 65.36 87.79 136.48 324.70 127.04 140.60 2 6658 Transcript 0 6.81 11.02 48.29 32.03 2.31 8.70 3.21 13.43 41.05 10.27 43.60 0.00 1.82 24.42 20.49 5.79 16.97 13.90 8.28 22.95 92.36 36.69 26.31 3 356488 Transcript 0 0.00 0.00 1.42 3.10 0.00 0.00 0.00 0.00 6.22 1.61 0.00 7.65 6.49 0.00 0.00 7.43 4.58 0.00 0.00 0.00 2.66 0.00 4.35 4 393244 Transcript 0 10.92 3.44 12.52 10.67 4.61 5.27 5.73 8.26 15.04 5.80 14.01 1.75 2.01 10.28 8.17 6.42 6.25 5.21 6.87 9.26 20.95 7.24 12.75 5 443088 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 50.93 16.91 35.59 31.94 17.80 60.63 27.95 12.49 35.99 10.22 40.97 0.00 4.79 29.46 38.69 48.30 28.45 18.06 70.39 25.02 90.30 42.06 134.89 7 E1a_E2a KnownJunction 0 7.04 0.00 7.45 9.62 0.00 16.69 0.00 3.61 3.07 5.05 0.00 0.00 0.00 4.65 0.00 0.00 0.00 3.77 0.00 0.00 2.84 3.12 16.90 8 E1a_E4a KnownJunction 0 0.00 0.00 1.42 3.10 0.00 0.00 0.00 0.00 6.22 1.61 0.00 7.65 6.49 0.00 0.00 7.43 4.58 0.00 0.00 0.00 2.66 0.00 4.35 9 E2_Aa NovelBoundary 0 0.00 5.53 21.94 22.54 4.33 2.90 4.02 10.15 12.70 5.29 54.70 0.00 12.34 34.43 18.17 12.30 16.27 10.16 27.01 17.45 124.05 25.53 36.19 10 ER2a ExonRegion 0 7.76 12.41 45.13 27.26 3.12 7.03 3.45 8.21 39.03 8.75 49.21 0.00 5.47 26.87 26.35 8.73 16.50 10.93 8.83 22.25 105.82 34.20 22.76 11 E2a_E4a KnownJunction 1 5.63 20.65 92.28 59.20 3.82 2.38 6.18 28.46 81.05 17.00 81.60 0.00 0.00 41.73 35.11 8.63 34.41 26.99 16.00 46.60 168.41 72.75 39.27 12 ER3a ExonRegion 0 2.56 0.00 1.51 1.35 0.24 0.00 2.68 1.06 1.80 0.00 9.09 0.00 0.00 0.63 2.41 0.00 0.00 0.05 1.70 1.55 10.68 0.05 8.39 13 E3a_E4a KnownJunction 0 11.11 0.00 3.31 1.30 3.23 0.00 6.09 2.46 1.79 0.00 14.85 0.00 0.00 2.47 6.30 0.00 0.00 2.11 4.05 0.00 2.84 0.00 7.60 14 ER4a ExonRegion 0 47.41 26.64 228.02 141.18 16.05 63.86 16.71 69.80 169.59 68.81 162.28 7.90 23.61 86.86 89.53 68.25 84.24 55.23 110.43 146.14 315.63 129.14 165.09 15 E4a_E5a KnownJunction 0 61.94 45.98 339.61 203.47 30.73 149.91 17.40 91.02 206.25 84.13 171.78 18.61 80.35 137.85 78.99 91.17 98.46 69.02 78.87 185.42 411.44 164.78 191.73 16 ER5a ExonRegion 0 69.19 47.43 257.35 201.35 39.64 104.53 56.69 85.49 176.36 89.11 185.83 22.18 66.17 121.36 88.60 71.56 134.32 64.96 85.56 199.18 486.00 187.32 143.67 17 E5a_E6a KnownJunction 1 122.84 82.49 231.57 229.14 35.99 71.21 40.59 96.32 185.99 76.61 185.47 32.11 57.63 76.17 122.01 94.68 109.96 71.22 104.66 187.60 485.32 210.09 129.07 18 ER6a ExonRegion 0 57.31 45.70 242.66 203.58 29.73 77.93 36.73 78.96 205.10 82.64 184.54 15.84 61.91 142.56 125.43 65.79 87.70 85.27 111.12 191.91 411.11 180.00 171.25 19 E6_Da KnownBoundary 0 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 20 E6a_E6b KnownJunction 1 79.27 39.34 260.55 241.16 26.91 51.73 32.68 121.54 265.04 90.28 155.99 25.06 39.77 129.20 91.97 77.84 132.68 106.58 93.37 176.09 390.00 160.74 204.02 21 ER6b ExonRegion 0 0.88 0.31 2.98 2.59 0.30 0.91 0.35 1.03 3.72 0.91 1.81 0.33 0.47 1.50 4.30 1.20 1.38 0.84 1.21 2.21 6.03 2.77 2.38 22 E6_Ab KnownBoundary 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 23 ER6c ExonRegion 0 51.88 58.23 227.45 194.80 36.24 83.78 37.37 69.77 212.92 73.10 206.18 21.22 71.92 141.14 123.86 93.90 89.75 93.83 99.75 172.25 405.50 176.24 182.17 24 E6b_E7a KnownJunction 1 97.65 104.32 299.34 263.57 39.47 140.03 83.38 101.37 277.83 78.54 258.01 17.11 148.53 193.13 235.99 114.67 96.96 88.01 150.31 219.62 491.38 209.85 254.30 25 E6b_E8a NovelJunction 0 25.93 14.47 27.50 13.75 12.05 2.90 9.36 19.88 18.03 16.71 2.53 0.00 0.00 9.54 5.93 0.00 9.16 3.77 0.00 2.36 19.65 2.94 0.00 26 ER7a ExonRegion 0 47.81 56.78 238.68 195.80 32.02 76.38 36.55 62.49 201.34 55.91 166.34 21.26 73.83 121.86 97.65 65.18 88.47 60.46 84.57 132.29 316.21 139.80 138.09 27 E7a_E8a KnownJunction 0 51.05 48.08 225.42 235.27 74.87 54.63 30.87 56.31 168.89 56.81 131.56 6.30 58.60 145.80 96.55 98.52 64.70 56.71 77.65 152.76 245.57 142.12 133.08 28 ER8a ExonRegion 0 51.51 60.71 272.65 240.81 45.71 91.38 38.99 71.71 207.54 69.45 166.29 15.07 50.52 135.04 88.81 73.67 88.57 80.98 93.91 153.60 332.88 134.68 114.73 29 E8_Da KnownBoundary 0 24.23 16.05 56.15 41.49 32.00 41.34 16.12 30.15 72.42 17.54 31.74 0.00 6.82 45.56 27.44 24.10 0.00 23.55 21.65 37.84 88.90 36.31 30.47 30 E8a_E8b KnownJunction 0 13.34 51.04 220.19 179.06 15.03 79.50 36.74 39.39 170.17 51.84 120.56 0.00 20.45 80.99 89.99 53.06 46.38 27.23 75.30 103.16 164.14 83.46 92.62 31 ER8b ExonRegion 0 29.13 13.45 42.27 37.44 14.67 20.17 13.81 28.47 52.86 22.30 30.28 6.66 7.56 36.53 19.65 24.48 23.60 17.82 20.52 33.26 64.24 26.14 32.65 32 E8_Ab KnownBoundary 0 118.98 30.46 80.81 64.39 19.19 37.25 22.88 43.29 63.40 25.41 52.59 12.60 0.00 48.44 38.45 48.19 45.44 28.69 24.85 49.34 58.75 34.54 54.89 33 ER8c ExonRegion 0 92.78 69.81 235.51 195.09 39.85 101.48 52.08 94.80 214.99 78.40 176.53 12.32 49.47 106.19 102.21 77.53 88.68 81.35 68.33 130.52 318.12 111.27 127.15 34 E8b_E9a KnownJunction 1 126.47 58.02 237.66 166.41 68.85 105.22 44.12 80.01 211.77 47.17 213.90 0.00 39.28 111.72 79.98 78.61 135.30 113.42 61.46 150.21 378.94 147.70 163.81 35 I8 Intron 0 3.87 3.74 13.81 13.47 6.12 6.73 3.03 7.66 15.21 17.99 5.75 2.45 0.88 6.27 5.35 3.40 3.77 5.68 7.28 8.76 7.55 3.81 9.40 36 I8_AR1 ActiveIntronRegion 0 4.04 3.78 12.96 14.78 6.70 5.30 4.42 6.59 16.91 20.49 3.78 1.06 1.46 6.05 4.43 4.62 3.11 5.90 3.35 11.00 8.96 4.58 10.29 37 ER9a ExonRegion 0 78.06 65.70 227.82 182.57 41.35 103.18 37.79 74.58 191.87 66.18 182.70 16.97 53.90 117.41 89.05 73.15 109.37 86.35 90.21 143.15 391.35 137.12 142.60 38 E9a_E10a KnownJunction 0 69.79 89.39 249.22 227.41 33.28 81.37 56.40 114.88 205.90 72.20 120.14 5.70 38.80 165.28 121.76 100.57 91.72 56.96 118.31 143.43 391.67 167.17 159.89 39 ER10a ExonRegion 0 60.59 61.23 233.33 186.98 32.01 94.41 42.15 66.57 185.00 68.55 159.60 12.51 44.29 139.02 99.79 76.43 96.42 71.81 86.25 126.44 394.71 133.56 155.71 40 E10_Da NovelBoundary 0 7.56 15.59 28.95 20.51 10.61 9.82 24.07 18.73 37.44 20.09 12.37 0.00 0.00 12.07 4.45 8.72 18.33 12.35 4.71 15.21 23.17 5.33 8.19 41 E10a_E11a KnownJunction 0 87.94 69.72 259.60 218.05 63.67 88.24 56.00 85.72 160.10 78.44 170.94 18.91 48.86 160.10 93.33 56.99 93.22 84.52 49.32 106.42 353.92 99.01 183.27 42 E11_Aa NovelBoundary 0 6.52 5.59 38.35 45.08 11.54 27.65 19.74 10.43 33.16 19.93 9.53 0.00 8.28 14.19 0.00 19.82 12.34 15.46 21.55 6.33 26.56 11.08 6.91 43 ER11a ExonRegion 0 90.97 52.31 247.88 209.74 28.13 78.15 41.94 84.68 186.01 59.72 161.94 12.99 27.75 112.63 108.32 79.69 92.00 67.41 87.24 128.53 333.78 131.78 159.45 44 E11_Da NovelBoundary 0 63.49 21.05 102.07 122.23 23.60 38.50 23.67 32.04 59.03 52.68 28.27 5.25 0.00 44.21 36.22 28.62 18.23 22.38 32.57 27.23 77.72 65.52 70.42 45 E11a_E12a KnownJunction 1 74.90 65.84 274.59 235.20 31.75 37.42 47.47 111.19 223.17 48.81 227.32 0.00 6.17 74.99 121.02 38.71 100.33 73.21 53.93 125.79 360.72 114.14 103.97 46 E11a_E13a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 I11 Intron 0 28.27 11.85 24.39 24.66 10.40 18.70 9.32 8.76 21.01 9.55 13.61 1.92 2.81 22.62 20.23 5.77 9.62 8.24 9.28 22.74 48.67 25.30 37.80 48 I11_AR1 ActiveIntronRegion 0 28.54 11.96 24.62 24.90 10.50 18.88 9.41 8.83 21.21 9.62 13.74 1.91 2.84 22.82 20.39 5.83 9.68 8.32 9.37 22.94 49.14 25.53 38.13 49 E12_Aa NovelBoundary 0 48.53 20.65 98.75 87.77 15.62 56.33 28.26 44.11 82.00 32.48 20.11 0.00 13.64 20.54 14.22 34.26 17.02 25.91 38.12 41.29 69.25 53.70 63.34 50 ER12a ExonRegion 0 117.46 78.58 280.59 207.89 22.64 70.64 43.67 94.72 233.13 71.61 170.95 14.68 33.14 107.03 110.68 69.96 84.18 50.74 84.23 135.69 362.59 119.09 138.06 51 E12_Da NovelBoundary 0 43.71 25.06 74.81 70.09 11.71 32.03 7.99 25.10 44.94 24.36 26.90 6.30 6.82 53.09 44.50 32.04 13.00 30.84 14.12 51.96 47.51 46.48 65.81 52 E12a_E13a KnownJunction 0 82.68 72.55 251.97 179.43 18.85 53.61 21.51 56.97 166.87 56.57 146.19 0.00 20.29 62.69 98.65 58.45 80.60 53.56 43.95 133.20 263.17 92.22 90.91 53 I12 Intron 0 26.99 2.16 3.88 4.32 4.74 9.74 4.69 0.91 1.30 0.61 8.21 0.00 1.37 22.43 10.21 11.58 7.01 4.89 3.38 14.32 20.29 18.45 24.96 54 I12_AR1 ActiveIntronRegion 0 27.34 2.19 3.93 4.38 4.79 9.88 4.76 0.93 1.32 0.61 8.32 0.00 1.39 22.73 10.34 11.74 7.09 4.94 3.43 14.49 20.58 18.71 25.31 55 E13_Aa NovelBoundary 0 58.16 8.88 96.83 75.75 24.96 15.79 17.14 14.91 35.04 15.90 24.48 0.00 13.64 56.80 29.30 11.45 25.90 26.07 8.56 35.99 77.78 54.31 47.55 56 ER13a ExonRegion 0 110.37 51.51 286.79 199.62 29.05 87.24 41.64 82.54 197.36 79.63 181.15 9.09 27.74 110.00 109.58 69.06 71.48 70.82 71.88 145.06 360.87 122.29 126.19 57 E13a_E14a KnownJunction 0 182.62 79.06 408.24 280.05 32.26 82.00 43.15 107.33 229.95 96.43 176.52 19.96 40.74 100.77 133.63 59.39 93.03 91.24 73.79 174.69 300.18 102.38 149.47 58 ER14a ExonRegion 0 203.20 68.06 399.19 315.77 47.52 87.11 44.29 141.83 255.87 104.23 191.96 14.40 43.05 153.40 170.75 96.16 90.94 114.89 96.55 201.88 394.81 150.75 186.33 59 E14a_E15a KnownJunction 0 218.63 84.13 479.76 400.98 55.26 106.70 43.85 152.75 296.50 102.64 202.58 30.01 92.20 148.10 216.08 133.81 107.06 109.93 127.25 297.60 424.16 161.23 237.65 60 ER15a ExonRegion 0 187.93 71.77 407.59 389.61 60.76 97.57 38.78 138.92 278.31 106.42 225.75 40.59 85.98 181.70 202.60 119.88 124.06 108.02 120.91 267.64 439.09 205.05 218.41 61 E15_Ac KnownBoundary 0 170.18 75.45 454.66 457.68 57.56 70.41 43.77 145.65 298.81 127.22 266.01 39.76 112.49 181.65 142.65 113.13 127.82 108.36 153.32 261.61 444.06 239.36 199.49 62 ER15b ExonRegion 0 174.11 74.89 439.27 422.38 59.91 85.15 42.65 147.67 300.46 118.93 263.71 29.93 85.03 194.61 150.61 106.61 129.17 111.03 140.02 264.57 459.43 245.13 196.88 63 ER15c ExonRegion 0 128.05 63.04 435.01 423.18 44.15 74.27 44.35 151.24 290.87 122.15 270.61 12.99 86.77 172.16 132.01 105.51 112.23 102.55 129.01 231.91 416.50 203.14 176.20 64 ER15d ExonRegion 0 129.64 60.56 420.19 419.51 57.53 92.78 54.61 145.57 307.12 110.03 272.24 24.49 125.46 148.96 143.07 105.70 100.47 101.45 135.98 237.96 478.62 195.66 170.78 65 E15b_E16a KnownJunction 0 151.43 71.24 487.95 449.76 80.39 130.61 78.96 150.70 351.01 111.42 252.64 30.61 115.90 139.21 195.44 119.80 107.25 92.11 147.96 236.88 546.91 195.40 194.71 66 ER16a ExonRegion 0 88.34 49.77 409.12 410.79 71.21 86.92 39.52 155.87 289.11 100.28 280.01 30.53 103.43 148.38 173.11 127.61 126.34 95.66 185.33 217.72 477.82 198.21 244.31 67 E16_Da KnownBoundary 0 66.09 34.93 265.51 328.66 22.24 56.16 15.24 115.75 290.94 73.41 187.05 25.36 33.60 140.21 118.55 78.95 129.50 27.23 122.07 170.79 388.58 222.83 117.37 68 ER16b ExonRegion 0 127.41 46.29 151.57 181.50 40.24 56.46 22.54 68.20 134.40 45.58 102.33 10.27 73.24 66.04 78.03 60.63 70.44 28.13 88.33 89.04 252.44 101.74 103.25 69 IG35_AR3 ActiveIntergenicRegion 0 0.57 2.07 0.98 0.00 0.00 0.00 0.68 1.61 5.47 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 1.14 2.56 8.92 4.75