Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PDK2 Gene 0 56.95 64.46 182.19 141.61 99.78 129.09 53.95 193.77 315.30 215.97 106.08 28.98 42.80 59.27 65.10 11.00 29.65 113.32 134.13 113.97 160.14 83.69 71.61 2 7708 Transcript 0 34.12 65.21 211.19 159.87 108.73 141.58 49.79 241.02 388.24 254.02 154.91 58.20 65.35 77.48 116.33 21.38 33.00 138.70 174.25 175.68 218.81 112.86 74.23 3 442211 Transcript 0 1.06 0.00 0.00 1.36 2.99 0.00 0.66 0.00 0.62 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 22.09 3.43 10.61 3.83 15.97 21.49 13.61 5.94 7.14 9.10 19.87 0.00 12.16 5.18 7.98 2.69 1.86 9.53 9.95 6.32 9.71 12.44 15.51 5 ER1b ExonRegion 0 56.20 32.78 86.39 43.96 54.53 85.15 30.95 82.57 107.66 90.19 85.20 11.60 18.83 29.39 36.83 7.12 16.28 80.02 98.46 67.46 90.31 55.85 52.24 6 E1a_E2a KnownJunction 0 44.01 27.76 192.51 120.46 41.09 37.14 25.61 180.81 238.68 177.10 158.20 53.72 46.10 48.97 71.08 15.21 30.11 80.25 114.36 133.14 162.29 144.02 77.60 7 ER2a ExonRegion 0 13.24 25.89 215.25 132.42 66.74 108.30 37.39 196.59 320.15 221.81 147.55 35.86 65.33 70.36 84.63 16.01 28.55 151.35 182.80 155.18 186.55 100.33 102.74 8 E2a_E3a KnownJunction 0 16.82 47.62 259.30 144.87 98.98 187.73 80.60 226.98 415.88 234.67 162.57 48.02 39.12 42.38 82.33 15.04 37.49 200.76 96.85 182.87 228.58 86.34 99.96 9 I2_AR3 ActiveIntronRegion 0 5.76 3.54 19.02 14.62 26.55 5.00 6.05 13.77 13.21 10.02 1.53 0.00 0.00 0.21 0.65 0.00 0.00 0.00 6.19 3.09 1.08 0.00 0.00 10 ER3a ExonRegion 0 23.17 57.05 253.45 173.75 107.97 241.91 96.22 256.89 443.37 261.43 183.00 72.43 93.29 82.17 125.07 16.39 41.57 209.20 169.86 180.10 265.93 112.62 103.10 11 E3_Da KnownBoundary 0 46.60 97.09 299.87 227.94 143.21 319.76 137.08 306.62 518.54 314.23 195.15 130.24 119.47 96.47 141.05 18.54 36.75 210.50 242.45 212.72 297.21 134.71 104.48 12 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER3b ExonRegion 0 31.63 82.27 273.47 217.20 129.58 210.52 75.47 311.57 511.06 318.77 218.91 109.97 88.57 103.25 165.87 31.42 39.80 211.96 261.93 224.56 298.38 155.61 106.22 14 E3b_E4a KnownJunction 0 41.27 99.32 305.25 251.92 185.14 177.06 59.71 360.38 565.27 355.22 220.37 82.23 83.44 112.37 183.20 33.75 40.02 190.93 280.76 269.92 322.17 177.52 95.78 15 ER4a ExonRegion 0 41.48 75.82 255.44 166.52 104.23 157.26 50.36 286.18 469.50 332.96 160.47 40.61 77.21 89.14 108.26 17.66 50.33 142.36 144.36 201.90 244.97 105.87 79.42 16 E4_Ab KnownBoundary 0 62.83 67.49 294.67 227.74 166.72 121.80 42.66 345.60 610.44 359.55 95.39 48.47 108.27 88.00 107.79 15.72 46.10 79.42 157.09 186.13 164.51 105.69 56.68 17 ER4b ExonRegion 0 89.81 67.79 244.26 250.00 131.22 128.69 52.91 333.35 547.35 370.16 133.14 74.03 95.46 76.84 115.31 34.15 43.11 155.83 214.54 207.38 220.28 141.43 110.79 18 E4a_E5a KnownJunction 0 163.44 125.64 242.72 300.59 159.00 193.01 106.21 344.16 540.94 413.19 166.41 111.04 148.69 97.18 151.80 51.18 45.82 231.48 322.64 218.28 217.64 214.38 149.98 19 I4 Intron 0 6.88 9.02 11.34 8.71 30.46 13.55 9.20 10.28 20.94 9.85 4.58 4.07 4.49 5.73 6.48 0.44 0.98 6.78 6.59 7.86 4.88 7.39 2.17 20 I4_AR1 ActiveIntronRegion 0 7.61 6.65 4.78 7.30 28.87 10.19 9.09 10.10 23.45 9.50 3.79 2.00 7.58 7.81 9.76 0.00 2.16 6.30 11.46 7.65 3.60 14.30 3.84 21 I4_AR2 ActiveIntronRegion 0 6.32 11.04 16.84 9.92 31.94 16.42 9.33 10.48 18.97 10.20 5.25 5.76 1.95 4.04 3.80 0.81 0.00 7.21 2.59 8.08 5.97 1.70 0.80 22 E5_Aa NovelBoundary 1 16.82 5.59 28.92 15.28 60.02 15.22 13.20 20.17 35.56 25.04 0.00 13.95 0.00 6.65 20.03 0.00 0.00 8.87 13.46 5.05 11.43 0.00 7.85 23 ER5a ExonRegion 0 84.68 71.79 208.69 198.60 127.48 198.19 88.88 268.01 437.83 311.16 175.66 55.22 106.41 77.27 97.93 15.46 55.12 138.36 203.83 199.67 255.73 126.24 84.28 24 E5a_E6a KnownJunction 0 78.68 64.99 241.95 226.24 174.62 265.53 94.99 317.05 435.73 315.06 145.41 31.81 61.68 90.77 79.12 0.00 29.08 139.86 175.44 160.18 250.57 96.08 71.36 25 ER6a ExonRegion 0 51.50 69.01 244.38 202.34 185.21 211.66 76.04 305.94 479.67 320.78 120.63 43.35 111.30 78.25 70.08 15.70 42.66 153.60 159.35 169.48 219.81 88.39 78.72 26 E6a_E7a KnownJunction 1 64.75 68.80 275.18 264.97 167.06 182.00 69.82 359.85 588.13 397.07 107.29 61.97 166.06 52.21 69.97 15.21 48.62 150.14 114.07 151.16 173.78 46.97 84.85 27 ER7a ExonRegion 0 35.18 66.10 244.20 241.50 134.86 118.01 57.21 308.27 476.79 328.49 123.18 57.01 71.39 73.63 74.00 19.07 40.00 151.92 186.78 167.12 183.94 118.00 99.39 28 E7a_E8a KnownJunction 0 65.20 95.51 218.47 240.06 178.27 147.19 66.73 345.31 482.98 366.42 169.31 30.31 57.30 75.58 59.95 16.41 43.67 163.04 207.82 153.53 231.67 122.16 55.91 29 ER8a ExonRegion 0 40.98 77.73 191.60 180.24 140.54 167.86 69.02 261.94 398.99 282.44 150.41 38.66 63.01 80.98 65.85 16.54 34.28 143.83 164.22 117.60 192.21 85.38 72.50 30 E8a_E9a KnownJunction 0 39.41 93.01 218.59 176.20 184.21 220.78 104.31 237.20 359.23 242.94 129.03 25.21 53.41 83.88 56.99 7.60 29.27 108.03 128.47 126.30 157.29 54.19 50.71 31 ER9a ExonRegion 0 56.52 99.55 182.00 168.04 131.36 216.76 76.21 226.43 345.49 258.35 96.77 42.53 62.27 80.41 55.10 10.35 27.48 154.71 163.22 111.15 139.79 96.27 90.38 32 E9a_E10a KnownJunction 0 86.09 92.35 190.80 178.27 96.60 185.46 62.76 214.61 293.20 210.46 90.71 18.31 45.13 76.52 47.35 15.12 22.16 132.15 168.38 74.66 148.88 75.01 50.88 33 ER10a ExonRegion 0 52.76 70.07 169.63 131.98 98.37 126.56 72.09 175.98 248.70 195.08 88.81 21.08 31.51 64.98 43.72 6.67 25.91 95.47 133.42 94.59 144.59 62.82 55.77 34 E10a_E11a KnownJunction 0 45.71 72.09 162.83 120.60 86.67 139.98 72.74 174.98 219.53 172.88 67.49 12.60 6.49 61.98 57.36 4.02 13.56 58.53 114.45 84.37 125.96 86.77 53.18 35 ER11a ExonRegion 0 67.64 68.63 172.09 131.21 93.77 110.24 49.58 165.11 283.12 185.88 83.66 17.90 20.56 49.56 55.84 7.31 25.53 92.84 110.83 86.42 139.25 74.42 63.94 36 ER11b ExonRegion 0 2.12 0.00 0.00 2.73 2.68 0.00 1.32 0.00 1.24 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 IG20 Intergenic 0 2.51 2.41 18.05 12.85 10.58 6.52 7.07 18.33 17.10 21.28 5.73 0.00 0.00 2.34 6.54 0.59 1.96 8.72 11.96 9.25 8.28 6.18 5.22 38 IG20_AR1 ActiveIntergenicRegion 0 2.53 2.43 18.17 12.95 10.66 6.58 7.12 18.47 17.23 21.45 5.78 0.00 0.00 2.36 6.60 0.59 1.97 8.78 12.06 9.33 8.34 6.23 5.27