Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCL3L1 Gene 0 23.74 0.60 3.86 0.90 10.79 0.70 6.79 18.38 11.20 1.99 1091.43 220.72 82.14 24.27 43.75 390.79 165.57 0.00 0.00 0.00 0.56 2.02 38.76 2 425833 Transcript 0 1.07 0.00 0.00 0.00 0.49 0.00 0.82 1.70 0.72 0.04 139.08 22.89 3.89 0.61 4.49 54.38 18.92 0.00 0.00 0.00 0.00 0.00 10.45 3 421963 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 438338 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 492788 Transcript 0 47.51 1.03 4.44 2.91 18.77 2.59 11.83 20.72 16.85 2.15 846.34 262.12 107.44 15.38 17.36 310.48 132.02 0.00 0.00 0.00 1.37 1.07 20.91 6 422211 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 498676 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 394483 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 394486 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 394484 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 378354 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 2.00 0.00 0.00 0.00 1.93 0.00 0.00 1.25 0.00 0.00 69.80 1.44 0.26 1.62 3.55 30.55 7.70 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ae KnownBoundary 0 3.78 0.00 0.00 0.00 10.95 0.00 0.00 2.38 1.30 0.00 339.56 250.28 120.12 9.71 15.45 74.60 56.38 0.00 0.00 0.00 2.66 0.00 0.00 14 ER1b ExonRegion 1 5.39 0.00 0.33 0.00 3.89 0.00 0.72 3.77 0.45 0.31 557.03 9.45 4.69 18.46 32.44 161.04 85.52 0.00 0.00 0.00 0.00 0.76 12.55 15 ER1c ExonRegion 1 25.40 0.00 1.23 0.00 5.35 0.00 6.62 13.83 3.71 1.15 2758.25 12.99 4.69 66.59 121.85 805.45 432.42 0.00 0.00 0.00 0.00 4.17 79.29 16 ER1d ExonRegion 1 31.75 0.00 2.45 0.00 9.81 0.00 9.27 13.83 4.53 1.15 3142.89 14.43 7.82 72.54 132.49 942.16 497.33 0.00 0.00 0.00 0.00 5.56 94.95 17 ER1e ExonRegion 1 27.14 0.00 2.54 0.00 8.64 0.00 9.02 11.61 5.78 0.69 2287.31 145.11 49.20 34.38 78.25 685.76 410.81 0.00 0.00 0.00 0.00 4.20 71.61 18 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E1g KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER1f ExonRegion 0 32.71 0.00 1.97 1.11 10.66 0.00 3.87 10.39 7.50 0.89 730.76 133.84 46.60 17.60 20.39 301.46 94.08 0.00 0.00 0.00 0.60 0.00 21.41 22 E1_Db KnownBoundary 0 106.83 0.00 1.74 0.00 39.90 10.16 51.54 32.04 21.12 4.41 931.71 210.52 47.24 46.21 63.66 254.04 202.80 0.00 0.00 0.00 0.00 0.00 8.02 23 E1b_E1g KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1g ExonRegion 0 40.57 1.02 2.04 2.04 19.62 0.00 15.45 18.72 10.91 1.15 911.68 170.29 44.56 44.93 29.01 180.31 111.13 0.00 0.00 0.00 0.00 0.69 5.87 26 ER1h ExonRegion 0 47.51 1.03 4.44 2.91 18.77 2.59 11.83 20.72 16.85 2.15 846.34 262.12 107.44 15.38 17.36 310.48 132.02 0.00 0.00 0.00 1.37 1.07 20.91 27 E1_Ag KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER1i ExonRegion 0 21.70 0.96 9.20 0.00 6.17 0.26 4.68 25.38 12.65 3.68 1364.51 237.44 85.90 65.53 126.74 889.68 247.80 0.00 0.00 0.00 0.00 5.48 82.02 29 E1c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER3a ExonRegion 1 12.17 0.00 1.99 0.17 3.34 0.00 2.65 29.38 10.65 1.15 1265.81 394.52 93.80 21.32 81.96 739.32 159.68 0.00 0.00 0.00 0.00 1.56 89.93 32 ER3b ExonRegion 0 15.32 0.00 5.51 1.34 16.95 1.10 6.76 30.74 19.55 3.65 1579.51 285.69 62.47 32.83 67.39 417.72 227.01 0.00 0.00 0.00 1.50 5.44 37.04 33 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER3c ExonRegion 0 23.39 0.98 5.58 0.49 11.23 0.25 7.26 23.93 17.93 4.41 1431.00 367.13 145.71 24.95 51.27 410.28 140.11 0.00 0.00 0.00 0.26 2.54 35.33 35 E3_Db NovelBoundary 0 9.78 0.00 0.00 1.27 0.00 0.00 0.00 2.30 16.06 0.00 35.75 21.16 0.00 0.00 4.45 0.00 9.54 0.00 0.00 0.00 5.99 0.00 15.88 36 ER4a ExonRegion 1 1.23 0.00 0.00 0.00 0.51 0.00 4.11 7.27 2.37 0.22 571.47 78.38 19.21 1.43 13.09 205.67 76.98 0.00 0.00 0.00 0.00 0.00 49.34 37 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 Ix_SR3 SilentIntronRegion 0 10.27 0.49 1.11 0.74 2.84 1.11 2.58 6.88 3.58 0.83 120.63 9.96 6.76 6.31 11.65 55.82 29.20 0.00 0.00 0.00 2.14 1.01 5.35 39 Ix_AR1 ActiveIntronRegion 0 3.27 1.66 0.00 1.86 3.89 8.50 7.82 0.00 0.45 5.32 3.69 0.00 0.00 1.62 10.29 9.46 6.00 4.54 4.05 13.54 12.62 4.92 10.41 40 I4_AR3 ActiveIntronRegion 0 1.64 0.79 5.91 4.21 1.04 3.28 1.54 4.66 14.29 8.19 0.25 0.00 1.00 1.71 4.04 0.00 2.14 3.57 0.41 9.91 6.49 1.90 3.80 41 E5_Aa NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 177.10 12.45 0.00 0.00 8.90 181.75 20.10 0.00 0.00 0.00 0.00 0.00 8.11 42 ER5a ExonRegion 1 15.42 0.64 1.16 0.00 10.52 0.00 7.97 10.76 4.52 0.00 1714.09 79.06 23.19 29.84 59.00 503.49 351.29 0.00 0.00 0.00 0.00 1.32 67.07 43 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E5a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER7a ExonRegion 0 7.40 0.00 2.10 0.00 1.05 0.81 1.67 4.40 5.39 0.00 620.68 95.40 41.52 31.41 54.34 409.74 160.91 0.00 0.00 0.00 0.98 2.77 51.53 47 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E9_Ac NovelBoundary 1 220.34 0.00 25.16 0.00 47.45 21.81 40.98 47.11 59.35 19.23 1955.13 268.29 46.91 77.58 269.61 1349.99 823.75 0.00 0.00 0.00 0.00 13.35 73.16 50 ER9a ExonRegion 0 9.79 0.00 2.45 0.00 10.70 0.00 1.49 10.37 11.12 1.15 858.69 205.11 62.73 17.46 47.51 465.51 105.63 0.00 0.00 0.00 0.00 1.56 67.91 51 ER9b ExonRegion 0 9.52 1.27 3.22 0.00 16.72 0.00 1.49 11.02 11.12 1.15 886.48 166.14 52.76 18.68 46.78 386.00 114.71 0.00 0.00 0.00 0.00 3.65 62.04 52 ER9c ExonRegion 0 14.63 1.40 6.42 0.02 19.05 0.00 7.61 18.19 11.96 2.67 1288.26 165.10 54.95 32.00 40.96 293.13 177.66 0.00 0.00 0.00 1.35 4.14 33.57 53 E9_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER9d ExonRegion 0 12.12 0.49 3.83 0.49 7.56 0.22 4.21 24.33 7.55 1.54 758.57 242.15 87.08 24.35 43.02 324.18 119.27 0.00 0.00 0.00 0.32 1.77 35.21 55 ER9e ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 54.12 34.64 0.00 0.00 5.80 35.67 9.90 0.00 0.00 0.00 0.00 0.00 2.94