Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCL4L2 Gene 0 38.38 0.76 5.87 1.61 10.48 8.21 8.70 26.77 27.63 3.98 402.80 51.10 21.06 17.13 57.78 244.27 104.80 0.00 0.00 0.00 0.21 1.17 7.39 2 394465 Transcript 0 17.61 0.41 0.00 0.06 3.28 18.65 0.75 0.52 3.57 0.76 16.98 0.58 1.25 7.23 8.97 32.61 15.11 0.00 0.00 0.00 0.43 0.00 0.00 3 389069 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394463 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 378342 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 339270 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 482104 Transcript 0 38.74 0.59 3.43 0.45 13.99 4.63 8.64 18.84 19.98 3.97 163.79 28.83 5.97 23.68 78.36 225.96 72.12 0.00 0.00 0.00 0.00 0.03 5.64 8 ER1a ExonRegion 0 51.15 0.00 0.00 0.18 9.30 55.95 1.73 1.56 9.95 0.00 47.84 0.00 3.74 21.69 26.32 97.23 44.01 0.00 0.00 0.00 1.29 0.00 0.00 9 E1_Ab KnownBoundary 0 45.71 0.00 0.00 2.73 7.56 53.15 1.68 0.00 20.80 0.00 69.18 5.25 31.65 71.52 59.09 165.00 50.12 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 8.82 0.00 0.00 0.58 1.12 6.48 0.37 0.85 9.36 0.00 65.16 0.00 3.63 19.42 17.09 51.89 46.89 0.00 0.00 0.00 0.75 0.00 0.00 11 E1_Ac KnownBoundary 0 9.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 65.38 0.00 0.00 4.65 5.32 55.11 32.82 0.00 0.00 0.00 0.00 0.00 0.00 12 E1_Ad KnownBoundary 0 6.22 0.00 0.00 0.00 3.57 0.00 0.00 0.00 4.75 0.00 28.38 0.00 0.00 7.18 0.00 76.48 34.41 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1c ExonRegion 0 10.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.88 0.00 67.01 0.00 0.00 17.87 24.18 89.16 40.71 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1d ExonRegion 1 43.06 0.69 1.16 0.00 2.91 7.53 4.95 0.00 4.67 0.00 13.16 4.04 1.30 16.02 24.11 85.36 4.81 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 1 19.80 0.21 0.88 0.02 4.49 4.90 3.00 3.83 3.03 2.65 55.82 14.95 14.72 8.71 28.89 157.16 19.29 0.00 0.00 0.00 0.00 1.34 3.12 18 E2a_E3a KnownJunction 0 6.52 0.00 2.96 0.00 0.00 2.27 0.00 4.60 5.76 0.00 47.33 18.16 0.00 14.13 50.81 111.25 26.93 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 13.09 0.00 2.76 0.00 4.41 0.00 1.27 6.02 6.83 0.23 67.49 1.96 0.00 5.66 10.16 88.25 25.86 0.00 0.00 0.00 0.00 0.29 0.40 23 Ix_AR1 ActiveIntronRegion 0 13.13 0.00 2.77 0.00 4.43 0.00 1.28 6.04 6.85 0.24 67.67 1.97 0.00 5.68 10.19 88.48 25.93 0.00 0.00 0.00 0.00 0.29 0.40 24 E3_Aa NovelBoundary 1 140.47 2.43 5.35 0.00 32.60 5.68 12.94 14.38 27.37 0.00 156.78 0.00 12.50 19.90 14.22 265.83 112.20 0.00 0.00 0.00 0.00 0.00 3.59 25 ER3a ExonRegion 0 39.80 0.00 2.86 1.36 7.84 2.37 6.95 9.58 15.71 7.36 99.03 14.07 0.00 11.14 55.08 127.47 44.52 0.00 0.00 0.00 0.00 0.00 7.75 26 E3_Ab KnownBoundary 0 55.19 0.00 0.00 1.73 23.43 0.00 6.23 9.32 26.94 2.74 167.88 17.26 0.00 15.25 19.41 139.71 92.75 0.00 0.00 0.00 0.00 0.00 7.68 27 ER3b ExonRegion 0 22.75 0.00 1.23 0.23 6.24 0.00 4.19 12.10 19.97 4.11 56.05 4.33 0.00 0.00 2.90 1.73 17.33 0.00 0.00 0.00 0.00 0.00 2.94 28 ER3c ExonRegion 0 20.91 0.00 1.03 0.00 6.81 1.06 6.29 26.72 21.65 2.33 153.78 6.23 2.47 10.57 29.83 154.60 68.45 0.00 0.00 0.00 0.00 0.00 3.04 29 E3_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER3d ExonRegion 0 69.89 1.78 4.48 0.00 34.13 9.24 18.97 42.33 38.47 4.56 345.00 54.25 17.90 45.77 129.19 439.15 144.90 0.00 0.00 0.00 0.00 0.09 9.17 31 E3_Ac KnownBoundary 0 50.82 0.00 1.83 0.00 9.76 0.00 6.58 9.78 3.18 0.00 74.23 20.26 6.01 0.00 0.00 29.56 9.54 0.00 0.00 0.00 0.00 0.00 0.00 32 E3_Ad KnownBoundary 0 21.04 0.00 0.00 0.00 8.57 0.00 6.76 6.37 4.69 1.67 86.23 6.30 6.82 0.00 6.06 59.22 23.09 0.00 0.00 0.00 0.00 0.00 0.00 33 ER3e ExonRegion 0 75.07 6.10 10.29 1.18 22.12 9.17 13.33 50.36 47.35 10.78 677.42 141.43 37.21 53.70 163.44 628.51 159.32 0.00 0.00 0.00 0.00 2.36 16.84 34 ER3f ExonRegion 1 11.41 1.50 6.81 3.54 5.65 1.35 13.81 62.30 54.10 8.03 995.36 102.16 21.63 18.75 120.04 480.70 246.33 0.00 0.00 0.00 0.00 3.27 24.64 35 E3_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3g ExonRegion 0 58.17 0.89 17.07 4.14 20.82 2.76 13.97 75.45 68.69 8.60 1236.43 143.45 55.77 18.68 111.84 551.76 274.93 0.00 0.00 0.00 0.00 3.19 17.73 37 E3_Dd KnownBoundary 0 44.23 0.00 25.16 12.12 16.81 0.00 12.54 54.55 86.92 8.41 353.41 126.34 126.29 21.07 77.01 226.18 93.31 0.00 0.00 0.00 0.00 11.88 12.29 38 ER3h ExonRegion 1 59.85 2.80 14.53 4.47 17.80 0.20 27.07 19.57 25.34 5.16 218.95 93.44 58.30 4.20 31.19 114.10 31.82 0.00 0.00 0.00 0.00 1.48 5.18 39 ER3i ExonRegion 0 1.69 1.22 0.00 0.00 0.54 0.00 0.53 0.00 0.74 2.29 3.09 1.73 0.00 0.00 0.58 0.59 1.32 0.00 0.00 0.00 0.00 0.00 0.00