Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RDM1 Gene 0 9.51 14.40 5.79 9.63 17.21 8.01 29.95 14.75 9.24 22.25 28.68 8.01 8.29 27.70 17.58 21.13 18.59 29.78 10.98 24.56 1.49 0.38 0.99 2 430160 Transcript 0 1.76 2.71 1.84 1.36 5.35 1.22 3.53 4.32 2.26 4.40 7.73 0.00 0.78 8.66 2.90 2.97 7.69 4.62 2.12 5.67 0.37 0.00 0.00 3 436836 Transcript 0 1.59 0.00 1.23 1.70 4.68 0.00 3.64 3.46 2.47 6.59 10.63 4.33 2.35 9.74 7.25 4.46 6.60 8.31 3.98 7.45 0.00 0.00 0.00 4 431884 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 425909 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 394529 Transcript 0 4.85 10.94 5.20 6.74 13.48 4.36 11.64 9.49 5.96 15.46 8.50 1.24 3.79 10.26 7.01 15.10 9.28 17.14 5.71 12.08 0.00 0.00 0.00 7 293273 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 394528 Transcript 0 0.00 2.71 3.68 0.91 1.78 0.00 1.77 2.88 0.82 2.68 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.85 1.06 0.00 0.00 0.00 0.00 9 394527 Transcript 1 14.08 6.71 7.75 0.00 31.92 0.00 0.00 9.53 3.07 7.63 2.42 0.00 0.00 7.24 0.00 0.00 21.97 9.53 9.60 15.28 0.00 0.00 0.00 10 419453 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 12 E1_Ad KnownBoundary 0 20.45 22.56 11.00 1.80 24.28 11.36 27.07 1.81 0.00 10.64 19.69 0.00 0.00 25.19 42.65 49.05 45.54 21.18 17.60 5.50 0.00 0.00 0.00 13 ER1b ExonRegion 0 6.35 5.29 1.72 0.91 3.57 6.36 3.44 0.00 0.00 1.30 3.22 0.00 0.00 8.66 9.48 12.09 11.44 2.59 2.76 2.13 0.00 0.00 0.00 14 ER1c ExonRegion 0 12.09 12.20 8.58 1.36 10.51 9.17 12.29 1.11 0.53 9.99 14.22 0.00 0.00 20.07 28.60 36.30 34.19 7.65 9.56 4.41 0.63 0.00 0.00 15 ER1d ExonRegion 0 20.24 17.08 7.28 9.92 14.57 8.32 26.06 10.64 7.42 23.79 25.31 6.25 5.47 15.01 18.40 39.74 35.67 24.71 10.41 17.63 0.96 0.00 0.00 16 E1_Da KnownBoundary 0 3.19 0.00 0.00 3.66 0.00 0.00 0.00 0.00 2.29 3.63 0.00 0.00 0.00 6.65 0.00 0.00 0.00 5.51 0.00 3.07 0.00 0.00 0.00 17 E1a_E1f KnownJunction 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 6.65 1.79 5.32 11.95 0.00 0.00 2.59 0.00 8.46 13.84 0.00 0.00 2.43 0.00 0.00 0.00 18 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.23 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1e ExonRegion 0 4.85 10.94 5.20 6.74 13.48 4.36 11.64 9.49 5.96 15.46 8.50 1.24 3.79 10.26 7.01 15.10 9.28 17.14 5.71 12.08 0.00 0.00 0.00 20 E1_Ae KnownBoundary 0 30.23 6.31 4.38 12.65 7.30 2.67 24.38 15.81 8.04 14.18 15.90 18.46 6.82 14.30 13.35 36.06 15.90 11.44 7.34 32.98 0.00 0.00 0.00 21 ER1f ExonRegion 0 24.63 20.15 8.08 16.85 7.54 1.00 15.23 15.71 12.15 21.61 14.15 11.91 7.14 21.78 5.47 21.95 11.10 20.54 7.96 26.02 0.00 0.00 0.00 22 E1_Af KnownBoundary 0 37.56 29.86 7.57 14.78 8.40 0.00 23.14 13.35 14.87 21.62 21.53 6.00 13.64 20.66 4.45 17.69 13.93 24.00 11.20 20.77 0.00 0.00 0.00 23 ER1g ExonRegion 0 13.15 25.28 13.38 13.96 27.36 9.75 26.66 19.56 10.32 37.70 64.36 3.94 9.80 40.93 27.16 38.49 43.58 72.28 23.93 37.72 0.00 0.00 0.00 24 E1_Db NovelBoundary 0 0.00 6.64 4.55 7.42 8.32 2.56 23.89 0.00 1.79 2.74 0.00 6.30 0.00 0.00 0.00 0.00 0.00 6.09 0.00 9.78 0.00 0.00 0.00 25 E1b_E2a KnownJunction 0 6.74 28.28 8.78 14.72 49.83 44.80 57.28 33.76 4.11 39.57 64.12 24.31 0.00 39.61 10.14 7.18 17.39 63.17 3.86 42.25 0.00 0.00 0.00 26 I1 Intron 0 5.78 3.13 6.60 7.11 11.73 7.52 28.82 5.28 6.03 8.23 1.43 5.26 5.97 3.57 5.28 5.66 5.72 7.07 5.71 11.56 1.13 0.59 3.34 27 I1_SR1 SilentIntronRegion 0 5.79 3.13 6.61 7.12 11.74 7.52 28.85 5.29 6.03 8.24 1.43 5.26 5.97 3.58 5.29 5.67 5.73 7.08 5.72 11.57 1.13 0.59 3.34 28 E2_Aa NovelBoundary 0 18.82 15.98 10.32 65.99 45.67 17.26 12.45 11.75 40.62 26.94 2.32 0.00 0.00 0.00 0.00 0.00 3.93 6.72 14.40 6.52 3.15 0.00 4.35 29 ER2a ExonRegion 0 11.79 24.26 4.71 15.21 25.15 10.77 46.77 25.53 19.72 33.83 50.72 17.61 5.60 37.10 34.75 35.80 19.06 52.22 7.67 28.34 1.28 0.00 0.00 30 E2_Ab KnownBoundary 0 21.04 31.84 3.08 14.35 11.80 10.28 24.78 25.75 25.20 31.05 62.65 11.85 6.82 45.50 48.83 40.42 15.99 53.31 4.14 35.22 0.00 0.00 0.00 31 ER2b ExonRegion 0 27.21 23.42 6.27 10.94 26.30 3.77 21.75 27.36 21.81 35.78 61.63 10.51 13.27 55.87 30.34 32.78 31.12 50.95 12.56 40.06 0.00 0.00 0.00 32 E2a_E3a KnownJunction 1 23.86 21.18 1.60 9.82 24.19 2.38 32.64 21.48 17.56 36.72 49.01 6.30 19.80 69.63 8.90 24.27 28.05 32.58 11.95 28.19 0.00 0.00 0.00 33 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E2a_E4b KnownJunction 0 14.08 6.71 7.75 0.00 31.92 0.00 0.00 9.53 3.07 7.63 2.42 0.00 0.00 7.24 0.00 0.00 21.97 9.53 9.60 15.28 0.00 0.00 0.00 35 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I2 Intron 0 6.82 4.77 2.41 1.79 7.45 4.31 20.57 2.64 2.70 5.26 2.27 4.70 2.83 4.45 4.43 2.61 2.90 1.35 2.33 5.30 0.97 0.92 0.86 38 I2_SR1 SilentIntronRegion 0 6.86 4.80 2.42 1.80 7.49 4.33 20.69 2.66 2.71 5.29 2.28 4.73 2.85 4.48 4.45 2.63 2.92 1.36 2.35 5.33 0.97 0.92 0.87 39 ER3a ExonRegion 0 10.24 18.82 4.15 9.72 23.16 12.17 53.39 22.23 14.01 30.44 49.76 24.44 23.31 51.08 29.24 23.51 23.91 36.80 17.70 28.54 8.68 1.89 1.77 40 E3_Da NovelBoundary 0 11.34 12.04 28.89 40.55 0.00 0.00 13.12 17.54 30.64 35.22 0.00 0.00 8.28 2.47 4.70 0.00 0.00 29.60 0.00 5.62 0.00 0.00 0.00 41 E3a_E4b KnownJunction 0 0.00 14.54 4.61 7.56 7.47 2.67 19.52 15.65 6.16 16.73 39.06 0.00 6.66 33.96 10.75 14.87 15.71 13.72 8.66 22.88 0.00 0.00 0.00 42 E3a_E5b KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.79 7.82 10.11 0.00 0.00 7.42 4.45 3.85 8.79 4.64 3.86 5.94 0.00 0.00 0.00 43 E4_Ab NovelBoundary 0 6.89 2.76 0.00 29.40 4.33 0.00 6.32 21.93 18.20 11.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 44 ER4a ExonRegion 0 5.29 8.13 5.51 4.09 16.05 3.67 10.59 12.96 6.79 13.19 23.19 0.00 2.35 25.99 8.70 8.92 14.85 13.86 6.37 17.02 1.10 0.00 0.00 45 ER4b ExonRegion 0 18.96 38.12 14.28 40.73 46.12 26.12 89.81 33.83 23.09 37.39 38.01 11.66 8.38 48.91 31.00 28.69 25.77 26.53 22.23 64.68 4.54 2.17 2.94 46 E4_Da KnownBoundary 0 3.56 6.51 37.31 39.46 4.33 0.00 9.49 63.46 32.61 72.42 7.32 5.70 6.82 2.94 0.00 4.10 0.00 13.80 4.24 21.41 0.00 0.00 0.00 47 E4a_E5b KnownJunction 0 7.33 0.00 3.49 3.90 12.31 0.00 10.69 4.44 1.79 18.62 32.59 12.45 6.82 22.96 25.96 17.43 20.29 26.49 9.32 20.26 0.00 0.00 0.00 48 ER4c ExonRegion 0 13.21 7.96 7.14 8.80 24.08 19.41 65.28 28.22 11.47 15.71 5.80 4.33 7.85 7.10 7.88 19.06 2.15 9.80 10.46 21.69 3.07 1.27 7.79 49 ER4d ExonRegion 1 27.51 16.27 9.80 6.81 60.20 51.35 161.52 25.06 12.35 13.76 3.87 30.31 14.07 17.87 20.31 35.67 3.30 16.63 22.30 34.04 6.61 2.08 20.56 50 ER4e ExonRegion 0 17.20 11.57 6.82 5.22 41.08 34.46 111.05 16.89 9.60 10.92 2.09 30.40 18.96 22.64 6.10 20.37 1.93 12.74 15.99 24.42 3.81 0.91 13.77 51 E4_Dc NovelBoundary 0 0.00 0.00 6.89 45.45 0.00 5.45 4.33 12.94 19.94 22.16 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E4_Dd NovelBoundary 0 3.63 12.63 3.02 16.95 0.00 0.00 4.42 16.47 14.38 16.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 53 ER4f ExonRegion 0 0.00 2.71 3.68 0.91 1.78 0.00 1.77 2.88 0.82 2.68 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.85 1.06 0.00 0.00 0.00 0.00 54 E5_Aa NovelBoundary 0 6.74 28.94 54.05 95.06 43.72 19.42 50.04 111.76 100.17 99.39 7.58 0.00 0.00 0.00 0.00 8.37 8.98 30.68 13.18 27.48 5.93 8.70 8.37 55 E5_Ab NovelBoundary 0 30.52 30.32 37.61 76.61 35.31 23.23 76.67 30.31 45.49 33.47 4.74 6.00 0.00 5.18 0.00 4.02 13.00 33.95 29.74 25.82 0.00 0.00 3.33 56 ER5a ExonRegion 0 3.17 0.00 2.45 3.41 9.37 0.00 7.28 6.91 4.94 13.19 21.26 8.66 4.69 19.49 14.51 8.92 13.20 16.63 7.96 14.89 0.00 0.00 0.00 57 ER5b ExonRegion 0 6.97 10.98 4.24 4.02 17.03 0.80 20.34 11.79 12.38 27.92 39.07 11.51 12.03 44.88 30.48 18.18 24.23 24.74 9.52 35.77 0.00 0.00 0.00 58 E5_Da NovelBoundary 0 16.60 29.27 38.44 64.79 20.37 2.90 22.92 69.13 63.57 103.82 2.58 12.60 0.00 0.00 4.45 0.00 0.00 48.96 4.33 11.25 0.00 0.00 0.00 59 E5a_E6a KnownJunction 0 3.78 0.00 2.87 7.62 4.33 2.56 26.45 8.50 2.89 18.16 26.74 6.00 6.82 54.92 29.79 8.46 22.35 15.17 0.00 35.47 0.00 0.00 0.00 60 ER6a ExonRegion 0 1.58 2.58 1.02 2.68 2.05 1.36 11.30 6.67 2.50 12.51 19.29 2.89 4.83 22.36 10.26 7.04 9.01 23.39 5.34 17.40 0.00 0.00 0.00 61 ER6b ExonRegion 0 0.00 0.00 0.70 0.00 1.15 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.26 0.00 2.13 0.00 0.00 0.00 62 IG40 Intergenic 0 1.02 3.40 0.73 2.87 6.21 0.90 5.86 5.47 5.21 9.33 4.49 3.12 4.39 6.74 0.86 3.93 4.83 21.13 3.78 15.19 0.05 0.02 0.02 63 IG40_SR12 SilentIntergenicRegion 0 0.80 2.42 0.84 3.08 4.41 1.51 5.35 4.12 4.11 8.23 4.71 3.72 2.37 8.92 0.69 3.55 5.43 22.90 4.05 15.59 0.05 0.00 0.00 64 IG40_AR14 ActiveIntergenicRegion 0 0.99 6.05 0.42 4.07 9.26 1.65 7.55 4.65 5.61 10.09 7.37 6.03 8.92 10.72 0.26 6.49 7.87 31.55 7.43 26.50 0.00 0.00 0.00 65 IG40_SR11 SilentIntergenicRegion 0 1.29 3.56 0.25 2.69 7.48 1.14 6.30 3.74 5.86 10.71 6.54 2.81 9.87 8.78 2.36 3.28 6.04 23.86 8.79 22.48 0.00 0.14 0.00 66 IG40_AR13 ActiveIntergenicRegion 0 0.38 2.57 0.33 2.39 8.01 2.78 11.55 5.56 6.88 13.98 8.23 5.10 9.80 11.59 0.58 8.84 9.52 39.01 7.16 23.84 0.00 0.00 0.00 67 IG40_SR10 SilentIntergenicRegion 0 0.36 3.58 0.24 2.58 7.95 1.13 8.34 7.89 5.75 13.64 6.32 5.94 6.95 9.33 0.71 6.78 6.05 37.36 7.12 27.35 0.19 0.00 0.00 68 IG40_AR12 ActiveIntergenicRegion 0 0.32 5.53 0.00 1.98 4.60 1.35 12.33 7.08 3.41 10.56 5.43 7.72 7.04 10.10 0.77 1.69 3.91 10.94 5.08 23.04 0.00 0.00 0.00 69 IG40_SR9 SilentIntergenicRegion 0 0.86 0.44 0.26 1.00 3.68 1.12 9.01 9.22 3.13 9.50 6.84 13.36 16.39 7.32 0.00 0.10 0.89 16.13 3.39 26.74 0.00 0.00 0.00 70 IG40_AR11 ActiveIntergenicRegion 0 1.54 2.52 0.84 0.87 3.83 0.88 4.62 5.10 5.99 8.59 3.53 3.07 3.44 10.02 1.62 4.41 5.37 31.94 4.83 19.24 0.00 0.00 0.00 71 IG40_SR8 SilentIntergenicRegion 0 0.61 1.18 1.68 1.99 4.30 0.22 5.49 5.48 6.39 10.82 6.10 0.00 0.00 11.39 2.21 2.15 6.38 21.54 3.10 17.25 0.00 0.00 0.00 72 IG40_SR7 SilentIntergenicRegion 0 0.76 2.78 0.82 1.32 3.28 0.44 4.83 4.88 6.21 8.36 7.20 2.49 4.96 10.74 1.10 5.65 4.98 27.22 6.08 20.82 0.00 0.00 0.00 73 IG40_AR10 ActiveIntergenicRegion 0 1.24 4.04 0.40 3.21 8.38 1.05 8.96 9.92 8.70 16.17 7.60 6.24 9.49 11.94 1.30 7.79 9.82 34.18 4.98 22.88 0.09 0.00 0.11 74 IG40_SR6 SilentIntergenicRegion 0 2.00 8.03 1.92 5.38 12.36 1.53 9.00 11.12 9.47 17.15 7.88 2.29 4.01 9.46 1.65 6.91 7.30 31.63 4.23 20.13 0.00 0.00 0.00 75 IG40_AR9 ActiveIntergenicRegion 0 1.03 12.02 1.34 10.75 23.72 1.01 15.56 10.22 10.19 15.44 9.85 1.93 5.17 14.25 3.69 9.58 8.80 40.12 7.39 21.00 0.00 0.00 0.00